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Genes within 1Mb (chr1:58899407:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -915379 sc-eQTL 2.63e-01 0.195 0.174 0.05 CD4_CTL L2
ENSG00000162600 OMA1 352605 sc-eQTL 5.75e-01 0.114 0.203 0.05 CD4_CTL L2
ENSG00000162601 MYSM1 199330 sc-eQTL 3.84e-01 0.183 0.21 0.05 CD4_CTL L2
ENSG00000172456 FGGY -397231 sc-eQTL 8.04e-01 0.0466 0.187 0.05 CD4_CTL L2
ENSG00000177606 JUN 115360 sc-eQTL 6.11e-01 -0.0854 0.168 0.05 CD4_CTL L2
ENSG00000134709 HOOK1 -915379 sc-eQTL 8.03e-01 0.0461 0.184 0.053 CD8_TCM L2
ENSG00000162600 OMA1 352605 sc-eQTL 4.96e-01 0.128 0.187 0.053 CD8_TCM L2
ENSG00000162601 MYSM1 199330 sc-eQTL 8.16e-02 -0.354 0.202 0.053 CD8_TCM L2
ENSG00000172456 FGGY -397231 sc-eQTL 9.84e-01 -0.00393 0.197 0.053 CD8_TCM L2
ENSG00000177606 JUN 115360 sc-eQTL 9.01e-01 -0.018 0.144 0.053 CD8_TCM L2
ENSG00000162600 OMA1 352605 sc-eQTL 2.90e-01 -0.212 0.2 0.051 NK_CD56bright L2
ENSG00000162601 MYSM1 199330 sc-eQTL 7.26e-02 0.347 0.192 0.051 NK_CD56bright L2
ENSG00000172456 FGGY -397231 sc-eQTL 7.77e-01 0.056 0.197 0.051 NK_CD56bright L2
ENSG00000177606 JUN 115360 sc-eQTL 8.64e-01 0.0254 0.148 0.051 NK_CD56bright L2
ENSG00000162600 OMA1 352605 sc-eQTL 2.11e-01 0.243 0.194 0.05 NK_HLA L2
ENSG00000162601 MYSM1 199330 sc-eQTL 4.58e-01 -0.143 0.192 0.05 NK_HLA L2
ENSG00000172456 FGGY -397231 sc-eQTL 2.39e-01 0.226 0.191 0.05 NK_HLA L2
ENSG00000177606 JUN 115360 sc-eQTL 6.36e-01 0.0827 0.174 0.05 NK_HLA L2
ENSG00000134709 HOOK1 -915379 sc-eQTL 1.78e-01 -0.225 0.166 0.05 Pro_T L2
ENSG00000162600 OMA1 352605 sc-eQTL 5.40e-01 -0.108 0.175 0.05 Pro_T L2
ENSG00000162601 MYSM1 199330 sc-eQTL 8.36e-01 -0.0423 0.205 0.05 Pro_T L2
ENSG00000172456 FGGY -397231 sc-eQTL 2.19e-01 -0.238 0.193 0.05 Pro_T L2
ENSG00000173406 DAB1 352673 sc-eQTL 3.30e-01 -0.135 0.138 0.05 Pro_T L2
ENSG00000177606 JUN 115360 sc-eQTL 5.04e-01 -0.0883 0.132 0.05 Pro_T L2
ENSG00000134709 HOOK1 -915379 sc-eQTL 1.08e-01 0.299 0.185 0.064 gdT L2
ENSG00000162600 OMA1 352605 sc-eQTL 5.26e-01 -0.12 0.189 0.064 gdT L2
ENSG00000162601 MYSM1 199330 sc-eQTL 6.29e-01 0.109 0.226 0.064 gdT L2
ENSG00000172456 FGGY -397231 sc-eQTL 8.53e-02 -0.349 0.201 0.064 gdT L2
ENSG00000173406 DAB1 352673 sc-eQTL 9.60e-01 -0.00728 0.143 0.064 gdT L2
ENSG00000177606 JUN 115360 sc-eQTL 6.60e-01 -0.0624 0.142 0.064 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000172456 FGGY -397231 eQTL 0.00677 -0.14 0.0516 0.00214 0.0 0.0569
ENSG00000232453 AC105277.1 -4340 eQTL 1.8e-05 0.203 0.0472 0.00372 0.00389 0.0569
ENSG00000234807 LINC01135 114279 eQTL 0.0222 0.173 0.0754 0.00158 0.0 0.0569

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000232453 AC105277.1 -4340 7.11e-05 5.86e-05 1.15e-05 2.48e-05 1.03e-05 2.55e-05 7.29e-05 9.34e-06 6.25e-05 3.18e-05 8.1e-05 3.12e-05 9.09e-05 2.56e-05 1.25e-05 4.28e-05 3.42e-05 4.58e-05 1.37e-05 1.31e-05 3.02e-05 7.39e-05 5.54e-05 1.75e-05 8.07e-05 1.81e-05 2.66e-05 2.56e-05 5.59e-05 4.38e-05 3.95e-05 4.02e-06 6.67e-06 1.07e-05 2.03e-05 1.02e-05 5.86e-06 6.85e-06 8.89e-06 5.08e-06 2.56e-06 6.11e-05 6.76e-06 7.45e-07 5.6e-06 8.04e-06 8.03e-06 4.12e-06 3.26e-06