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Genes within 1Mb (chr1:58245057:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -301745 sc-eQTL 1.49e-01 0.0911 0.063 0.31 B L1
ENSG00000162601 MYSM1 -455020 sc-eQTL 4.98e-01 -0.0451 0.0664 0.31 B L1
ENSG00000177606 JUN -538990 sc-eQTL 6.85e-01 -0.0243 0.0597 0.31 B L1
ENSG00000237352 LINC01358 -688586 sc-eQTL 4.19e-01 0.0572 0.0706 0.31 B L1
ENSG00000162600 OMA1 -301745 sc-eQTL 1.38e-01 -0.0756 0.0508 0.31 CD4T L1
ENSG00000162601 MYSM1 -455020 sc-eQTL 9.30e-01 0.00448 0.051 0.31 CD4T L1
ENSG00000177606 JUN -538990 sc-eQTL 9.75e-01 -0.00183 0.0581 0.31 CD4T L1
ENSG00000162600 OMA1 -301745 sc-eQTL 4.49e-02 0.139 0.0689 0.31 CD8T L1
ENSG00000162601 MYSM1 -455020 sc-eQTL 2.98e-01 -0.0664 0.0636 0.31 CD8T L1
ENSG00000177606 JUN -538990 sc-eQTL 3.56e-01 -0.05 0.054 0.31 CD8T L1
ENSG00000162600 OMA1 -301745 sc-eQTL 8.29e-01 0.018 0.0837 0.315 DC L1
ENSG00000162601 MYSM1 -455020 sc-eQTL 1.90e-02 -0.226 0.0956 0.315 DC L1
ENSG00000177606 JUN -538990 sc-eQTL 8.45e-01 0.0163 0.0835 0.315 DC L1
ENSG00000162600 OMA1 -301745 sc-eQTL 6.63e-01 0.0276 0.0633 0.31 Mono L1
ENSG00000162601 MYSM1 -455020 sc-eQTL 8.22e-01 -0.0169 0.075 0.31 Mono L1
ENSG00000177606 JUN -538990 sc-eQTL 7.30e-01 0.0229 0.0662 0.31 Mono L1
ENSG00000162600 OMA1 -301745 sc-eQTL 8.73e-01 0.0124 0.0778 0.311 NK L1
ENSG00000162601 MYSM1 -455020 sc-eQTL 5.73e-01 0.0364 0.0645 0.311 NK L1
ENSG00000177606 JUN -538990 sc-eQTL 8.49e-01 -0.0111 0.0582 0.311 NK L1
ENSG00000162600 OMA1 -301745 sc-eQTL 5.32e-01 0.0506 0.0808 0.31 Other_T L1
ENSG00000162601 MYSM1 -455020 sc-eQTL 8.50e-01 0.0175 0.0926 0.31 Other_T L1
ENSG00000173406 DAB1 -301677 sc-eQTL 3.61e-01 0.0752 0.0822 0.31 Other_T L1
ENSG00000177606 JUN -538990 sc-eQTL 8.65e-01 -0.00913 0.0537 0.31 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -301745 sc-eQTL 5.49e-01 0.0624 0.104 0.309 B_Activated L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 3.26e-01 0.111 0.113 0.309 B_Activated L2
ENSG00000177606 JUN -538990 sc-eQTL 7.71e-01 0.0276 0.0946 0.309 B_Activated L2
ENSG00000237352 LINC01358 -688586 sc-eQTL 1.64e-02 0.23 0.0947 0.309 B_Activated L2
ENSG00000162600 OMA1 -301745 sc-eQTL 3.52e-01 0.0826 0.0885 0.309 B_Intermediate L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 4.53e-01 -0.0657 0.0874 0.309 B_Intermediate L2
ENSG00000177606 JUN -538990 sc-eQTL 5.29e-01 0.0394 0.0625 0.309 B_Intermediate L2
ENSG00000237352 LINC01358 -688586 sc-eQTL 7.38e-01 0.0282 0.0841 0.309 B_Intermediate L2
ENSG00000162600 OMA1 -301745 sc-eQTL 9.74e-01 -0.00297 0.0897 0.31 B_Memory L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 7.25e-01 0.0344 0.0977 0.31 B_Memory L2
ENSG00000177606 JUN -538990 sc-eQTL 6.67e-01 0.0314 0.0729 0.31 B_Memory L2
ENSG00000237352 LINC01358 -688586 sc-eQTL 1.75e-01 0.119 0.0877 0.31 B_Memory L2
ENSG00000162600 OMA1 -301745 sc-eQTL 6.11e-01 0.0417 0.082 0.31 B_Naive1 L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 7.54e-02 -0.126 0.0705 0.31 B_Naive1 L2
ENSG00000177606 JUN -538990 sc-eQTL 4.39e-01 -0.0456 0.0588 0.31 B_Naive1 L2
ENSG00000237352 LINC01358 -688586 sc-eQTL 9.55e-02 -0.14 0.0837 0.31 B_Naive1 L2
ENSG00000162600 OMA1 -301745 sc-eQTL 3.80e-02 0.187 0.0894 0.311 B_Naive2 L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 3.67e-01 0.0792 0.0877 0.311 B_Naive2 L2
ENSG00000177606 JUN -538990 sc-eQTL 2.06e-02 -0.155 0.0663 0.311 B_Naive2 L2
ENSG00000237352 LINC01358 -688586 sc-eQTL 7.33e-01 -0.0272 0.0795 0.311 B_Naive2 L2
ENSG00000162600 OMA1 -301745 sc-eQTL 2.68e-01 -0.112 0.101 0.307 CD4_CTL L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 2.31e-01 -0.125 0.104 0.307 CD4_CTL L2
ENSG00000177606 JUN -538990 sc-eQTL 4.00e-01 0.0702 0.0832 0.307 CD4_CTL L2
ENSG00000162600 OMA1 -301745 sc-eQTL 1.21e-01 -0.0963 0.0618 0.31 CD4_Naive L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 4.79e-01 0.0417 0.0589 0.31 CD4_Naive L2
ENSG00000177606 JUN -538990 sc-eQTL 6.86e-01 -0.0229 0.0567 0.31 CD4_Naive L2
ENSG00000162600 OMA1 -301745 sc-eQTL 8.65e-01 0.0114 0.0671 0.31 CD4_TCM L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 3.07e-01 -0.0715 0.0697 0.31 CD4_TCM L2
ENSG00000177606 JUN -538990 sc-eQTL 5.19e-01 -0.0418 0.0646 0.31 CD4_TCM L2
ENSG00000162600 OMA1 -301745 sc-eQTL 9.56e-01 -0.00523 0.0952 0.31 CD4_TEM L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 5.77e-01 0.0506 0.0907 0.31 CD4_TEM L2
ENSG00000177606 JUN -538990 sc-eQTL 3.55e-01 -0.07 0.0754 0.31 CD4_TEM L2
ENSG00000162600 OMA1 -301745 sc-eQTL 1.13e-01 0.147 0.0924 0.31 CD8_CTL L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 3.86e-01 -0.066 0.0759 0.31 CD8_CTL L2
ENSG00000177606 JUN -538990 sc-eQTL 4.84e-01 -0.0453 0.0646 0.31 CD8_CTL L2
ENSG00000162600 OMA1 -301745 sc-eQTL 8.87e-02 0.136 0.0797 0.31 CD8_Naive L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 2.63e-02 -0.18 0.0804 0.31 CD8_Naive L2
ENSG00000177606 JUN -538990 sc-eQTL 9.26e-01 0.00646 0.0697 0.31 CD8_Naive L2
ENSG00000162600 OMA1 -301745 sc-eQTL 1.69e-01 0.134 0.097 0.303 CD8_TCM L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 8.79e-01 -0.0162 0.106 0.303 CD8_TCM L2
ENSG00000177606 JUN -538990 sc-eQTL 6.64e-01 -0.0327 0.0751 0.303 CD8_TCM L2
ENSG00000162600 OMA1 -301745 sc-eQTL 7.22e-01 0.0357 0.1 0.304 CD8_TEM L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 7.40e-01 -0.0337 0.101 0.304 CD8_TEM L2
ENSG00000177606 JUN -538990 sc-eQTL 4.65e-01 -0.0533 0.0728 0.304 CD8_TEM L2
ENSG00000162600 OMA1 -301745 sc-eQTL 3.38e-01 0.094 0.0978 0.303 MAIT L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 2.89e-01 0.11 0.104 0.303 MAIT L2
ENSG00000173406 DAB1 -301677 sc-eQTL 2.62e-01 0.103 0.0912 0.303 MAIT L2
ENSG00000177606 JUN -538990 sc-eQTL 9.68e-01 0.00282 0.0713 0.303 MAIT L2
ENSG00000162600 OMA1 -301745 sc-eQTL 3.10e-01 -0.1 0.0982 0.318 NK_CD56bright L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 8.02e-01 -0.0239 0.0951 0.318 NK_CD56bright L2
ENSG00000177606 JUN -538990 sc-eQTL 4.75e-01 -0.052 0.0726 0.318 NK_CD56bright L2
ENSG00000162600 OMA1 -301745 sc-eQTL 6.82e-01 -0.0344 0.084 0.312 NK_CD56dim L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 5.86e-01 0.0406 0.0744 0.312 NK_CD56dim L2
ENSG00000177606 JUN -538990 sc-eQTL 5.77e-01 -0.0363 0.065 0.312 NK_CD56dim L2
ENSG00000162600 OMA1 -301745 sc-eQTL 5.47e-01 -0.0581 0.0962 0.317 NK_HLA L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 8.35e-01 -0.0199 0.0952 0.317 NK_HLA L2
ENSG00000177606 JUN -538990 sc-eQTL 5.45e-01 0.0522 0.0862 0.317 NK_HLA L2
ENSG00000162600 OMA1 -301745 sc-eQTL 1.87e-01 0.117 0.0884 0.312 NK_cytokine L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 9.15e-01 -0.00857 0.0805 0.312 NK_cytokine L2
ENSG00000177606 JUN -538990 sc-eQTL 2.86e-01 -0.067 0.0627 0.312 NK_cytokine L2
ENSG00000162600 OMA1 -301745 sc-eQTL 5.29e-01 -0.0728 0.115 0.296 PB L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 7.93e-01 -0.0287 0.109 0.296 PB L2
ENSG00000177606 JUN -538990 sc-eQTL 2.05e-01 -0.144 0.113 0.296 PB L2
ENSG00000237352 LINC01358 -688586 sc-eQTL 8.30e-01 -0.0199 0.0929 0.296 PB L2
ENSG00000162600 OMA1 -301745 sc-eQTL 5.31e-01 0.0543 0.0864 0.309 Pro_T L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 2.91e-01 -0.106 0.101 0.309 Pro_T L2
ENSG00000173406 DAB1 -301677 sc-eQTL 6.72e-01 0.0289 0.0682 0.309 Pro_T L2
ENSG00000177606 JUN -538990 sc-eQTL 1.08e-01 -0.104 0.0647 0.309 Pro_T L2
ENSG00000162600 OMA1 -301745 sc-eQTL 9.01e-01 -0.0107 0.0863 0.31 Treg L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 9.55e-02 -0.152 0.091 0.31 Treg L2
ENSG00000177606 JUN -538990 sc-eQTL 7.59e-01 0.0161 0.0522 0.31 Treg L2
ENSG00000162600 OMA1 -301745 sc-eQTL 6.02e-01 -0.0487 0.0933 0.307 cDC L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 1.32e-01 -0.157 0.103 0.307 cDC L2
ENSG00000177606 JUN -538990 sc-eQTL 7.75e-01 -0.0239 0.0835 0.307 cDC L2
ENSG00000162600 OMA1 -301745 sc-eQTL 7.63e-01 0.0228 0.0757 0.31 cMono_IL1B L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 1.49e-01 -0.115 0.0796 0.31 cMono_IL1B L2
ENSG00000177606 JUN -538990 sc-eQTL 8.46e-01 -0.0136 0.0698 0.31 cMono_IL1B L2
ENSG00000162600 OMA1 -301745 sc-eQTL 6.86e-01 0.0347 0.0855 0.31 cMono_S100A L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 1.93e-02 0.203 0.0859 0.31 cMono_S100A L2
ENSG00000177606 JUN -538990 sc-eQTL 3.41e-01 0.0757 0.0794 0.31 cMono_S100A L2
ENSG00000162600 OMA1 -301745 sc-eQTL 4.24e-01 0.0853 0.106 0.315 gdT L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 8.42e-01 0.0255 0.128 0.315 gdT L2
ENSG00000173406 DAB1 -301677 sc-eQTL 4.47e-01 -0.0613 0.0805 0.315 gdT L2
ENSG00000177606 JUN -538990 sc-eQTL 2.67e-01 0.0885 0.0794 0.315 gdT L2
ENSG00000162600 OMA1 -301745 sc-eQTL 5.43e-01 0.0571 0.0936 0.311 intMono L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 8.52e-01 0.0193 0.103 0.311 intMono L2
ENSG00000177606 JUN -538990 sc-eQTL 5.28e-01 -0.0499 0.079 0.311 intMono L2
ENSG00000162600 OMA1 -301745 sc-eQTL 9.30e-01 -0.00682 0.0771 0.312 ncMono L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 5.72e-01 0.056 0.099 0.312 ncMono L2
ENSG00000177606 JUN -538990 sc-eQTL 9.41e-01 -0.00557 0.0751 0.312 ncMono L2
ENSG00000162600 OMA1 -301745 sc-eQTL 1.90e-01 0.13 0.0986 0.322 pDC L2
ENSG00000162601 MYSM1 -455020 sc-eQTL 6.95e-02 -0.192 0.105 0.322 pDC L2
ENSG00000177606 JUN -538990 sc-eQTL 6.57e-01 -0.0406 0.0913 0.322 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -301745 sc-eQTL 4.15e-01 0.0683 0.0836 0.31 B_Memory LOneK1K
ENSG00000162601 MYSM1 -455020 sc-eQTL 8.17e-01 -0.0185 0.0799 0.31 B_Memory LOneK1K
ENSG00000177606 JUN -538990 sc-eQTL 5.77e-01 0.0345 0.0618 0.31 B_Memory LOneK1K
ENSG00000237352 LINC01358 -688586 sc-eQTL 1.21e-01 0.141 0.0908 0.31 B_Memory LOneK1K
ENSG00000162600 OMA1 -301745 sc-eQTL 1.20e-01 0.113 0.0721 0.31 B_Naive LOneK1K
ENSG00000162601 MYSM1 -455020 sc-eQTL 4.74e-01 -0.0519 0.0724 0.31 B_Naive LOneK1K
ENSG00000177606 JUN -538990 sc-eQTL 3.05e-01 -0.0624 0.0607 0.31 B_Naive LOneK1K
ENSG00000237352 LINC01358 -688586 sc-eQTL 1.17e-01 -0.141 0.0899 0.31 B_Naive LOneK1K
ENSG00000162600 OMA1 -301745 sc-eQTL 8.14e-01 0.0169 0.0718 0.31 CD14_Mono LOneK1K
ENSG00000162601 MYSM1 -455020 sc-eQTL 8.96e-01 0.00947 0.0724 0.31 CD14_Mono LOneK1K
ENSG00000177606 JUN -538990 sc-eQTL 7.75e-01 0.0199 0.0695 0.31 CD14_Mono LOneK1K
ENSG00000162600 OMA1 -301745 sc-eQTL 5.16e-01 0.0484 0.0743 0.312 CD16_Mono LOneK1K
ENSG00000162601 MYSM1 -455020 sc-eQTL 5.02e-01 -0.0627 0.0933 0.312 CD16_Mono LOneK1K
ENSG00000177606 JUN -538990 sc-eQTL 6.11e-01 -0.0366 0.0717 0.312 CD16_Mono LOneK1K
ENSG00000162600 OMA1 -301745 sc-eQTL 6.66e-01 0.0338 0.0782 0.312 NK_CD56dim LOneK1K
ENSG00000162601 MYSM1 -455020 sc-eQTL 7.85e-01 -0.0179 0.0654 0.312 NK_CD56dim LOneK1K
ENSG00000177606 JUN -538990 sc-eQTL 8.93e-01 -0.00789 0.0587 0.312 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162600 OMA1 -301745 eQTL 0.00263 -0.0607 0.0201 0.0 0.0 0.314
ENSG00000162601 MYSM1 -455023 eQTL 0.0321 -0.0229 0.0107 0.0 0.0 0.314
ENSG00000184292 TACSTD2 -332716 eQTL 0.000921 -0.0762 0.0229 0.00192 0.0 0.314

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina