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Genes within 1Mb (chr1:58235199:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -311603 sc-eQTL 5.54e-01 -0.0368 0.0621 0.35 B L1
ENSG00000162601 MYSM1 -464878 sc-eQTL 6.44e-01 0.0302 0.0653 0.35 B L1
ENSG00000177606 JUN -548848 sc-eQTL 4.58e-01 0.0436 0.0585 0.35 B L1
ENSG00000237352 LINC01358 -698444 sc-eQTL 4.88e-02 0.136 0.0688 0.35 B L1
ENSG00000162600 OMA1 -311603 sc-eQTL 5.47e-01 -0.0295 0.0489 0.35 CD4T L1
ENSG00000162601 MYSM1 -464878 sc-eQTL 8.14e-01 -0.0115 0.0489 0.35 CD4T L1
ENSG00000177606 JUN -548848 sc-eQTL 1.26e-01 0.0851 0.0554 0.35 CD4T L1
ENSG00000162600 OMA1 -311603 sc-eQTL 2.65e-01 -0.0734 0.0657 0.35 CD8T L1
ENSG00000162601 MYSM1 -464878 sc-eQTL 4.03e-01 -0.0505 0.0603 0.35 CD8T L1
ENSG00000177606 JUN -548848 sc-eQTL 1.59e-01 0.0721 0.051 0.35 CD8T L1
ENSG00000162600 OMA1 -311603 sc-eQTL 9.72e-02 -0.134 0.0804 0.34 DC L1
ENSG00000162601 MYSM1 -464878 sc-eQTL 4.43e-01 -0.072 0.0936 0.34 DC L1
ENSG00000177606 JUN -548848 sc-eQTL 1.38e-01 0.12 0.0803 0.34 DC L1
ENSG00000162600 OMA1 -311603 sc-eQTL 1.98e-01 0.0807 0.0625 0.35 Mono L1
ENSG00000162601 MYSM1 -464878 sc-eQTL 1.88e-02 0.174 0.0734 0.35 Mono L1
ENSG00000177606 JUN -548848 sc-eQTL 4.62e-01 0.0482 0.0655 0.35 Mono L1
ENSG00000162600 OMA1 -311603 sc-eQTL 4.53e-01 -0.0567 0.0754 0.348 NK L1
ENSG00000162601 MYSM1 -464878 sc-eQTL 3.55e-01 -0.0579 0.0624 0.348 NK L1
ENSG00000177606 JUN -548848 sc-eQTL 7.22e-01 0.0201 0.0564 0.348 NK L1
ENSG00000162600 OMA1 -311603 sc-eQTL 9.74e-01 0.00254 0.0774 0.35 Other_T L1
ENSG00000162601 MYSM1 -464878 sc-eQTL 7.13e-02 -0.159 0.088 0.35 Other_T L1
ENSG00000173406 DAB1 -311535 sc-eQTL 6.58e-01 -0.0349 0.0787 0.35 Other_T L1
ENSG00000177606 JUN -548848 sc-eQTL 5.09e-01 0.034 0.0513 0.35 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -311603 sc-eQTL 5.20e-01 -0.0613 0.095 0.357 B_Activated L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 9.14e-01 0.0112 0.104 0.357 B_Activated L2
ENSG00000177606 JUN -548848 sc-eQTL 2.00e-01 0.111 0.0861 0.357 B_Activated L2
ENSG00000237352 LINC01358 -698444 sc-eQTL 4.77e-01 0.0626 0.0879 0.357 B_Activated L2
ENSG00000162600 OMA1 -311603 sc-eQTL 3.14e-01 -0.088 0.0872 0.352 B_Intermediate L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 3.06e-01 0.0883 0.086 0.352 B_Intermediate L2
ENSG00000177606 JUN -548848 sc-eQTL 5.88e-01 0.0334 0.0615 0.352 B_Intermediate L2
ENSG00000237352 LINC01358 -698444 sc-eQTL 1.51e-01 0.119 0.0824 0.352 B_Intermediate L2
ENSG00000162600 OMA1 -311603 sc-eQTL 2.29e-01 -0.102 0.0847 0.347 B_Memory L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 2.46e-01 -0.107 0.0924 0.347 B_Memory L2
ENSG00000177606 JUN -548848 sc-eQTL 4.45e-01 0.0529 0.069 0.347 B_Memory L2
ENSG00000237352 LINC01358 -698444 sc-eQTL 4.86e-01 0.0582 0.0834 0.347 B_Memory L2
ENSG00000162600 OMA1 -311603 sc-eQTL 8.37e-01 -0.0163 0.0789 0.35 B_Naive1 L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 6.50e-01 0.0311 0.0683 0.35 B_Naive1 L2
ENSG00000177606 JUN -548848 sc-eQTL 5.33e-02 0.109 0.0561 0.35 B_Naive1 L2
ENSG00000237352 LINC01358 -698444 sc-eQTL 4.08e-02 0.165 0.0802 0.35 B_Naive1 L2
ENSG00000162600 OMA1 -311603 sc-eQTL 7.24e-01 -0.0308 0.0869 0.35 B_Naive2 L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 9.49e-01 -0.00541 0.0845 0.35 B_Naive2 L2
ENSG00000177606 JUN -548848 sc-eQTL 9.68e-01 -0.00257 0.0646 0.35 B_Naive2 L2
ENSG00000237352 LINC01358 -698444 sc-eQTL 8.55e-01 -0.014 0.0765 0.35 B_Naive2 L2
ENSG00000162600 OMA1 -311603 sc-eQTL 9.79e-01 -0.00256 0.0978 0.345 CD4_CTL L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 8.72e-01 -0.0163 0.101 0.345 CD4_CTL L2
ENSG00000177606 JUN -548848 sc-eQTL 7.64e-01 0.0242 0.0805 0.345 CD4_CTL L2
ENSG00000162600 OMA1 -311603 sc-eQTL 8.01e-01 -0.0153 0.0606 0.35 CD4_Naive L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 2.31e-01 -0.0688 0.0573 0.35 CD4_Naive L2
ENSG00000177606 JUN -548848 sc-eQTL 6.68e-02 0.101 0.0549 0.35 CD4_Naive L2
ENSG00000162600 OMA1 -311603 sc-eQTL 9.63e-01 -0.00295 0.0642 0.35 CD4_TCM L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 7.77e-01 -0.019 0.0669 0.35 CD4_TCM L2
ENSG00000177606 JUN -548848 sc-eQTL 1.16e-01 0.0971 0.0616 0.35 CD4_TCM L2
ENSG00000162600 OMA1 -311603 sc-eQTL 3.29e-01 0.0882 0.0902 0.35 CD4_TEM L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 4.89e-01 0.0596 0.086 0.35 CD4_TEM L2
ENSG00000177606 JUN -548848 sc-eQTL 2.61e-01 0.0806 0.0715 0.35 CD4_TEM L2
ENSG00000162600 OMA1 -311603 sc-eQTL 2.58e-01 -0.101 0.0889 0.35 CD8_CTL L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 7.68e-02 -0.129 0.0724 0.35 CD8_CTL L2
ENSG00000177606 JUN -548848 sc-eQTL 5.73e-01 0.035 0.062 0.35 CD8_CTL L2
ENSG00000162600 OMA1 -311603 sc-eQTL 4.83e-01 -0.0527 0.075 0.35 CD8_Naive L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 3.26e-01 0.0749 0.076 0.35 CD8_Naive L2
ENSG00000177606 JUN -548848 sc-eQTL 1.59e-01 0.0919 0.0649 0.35 CD8_Naive L2
ENSG00000162600 OMA1 -311603 sc-eQTL 5.47e-01 -0.055 0.0912 0.347 CD8_TCM L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 9.89e-01 -0.00138 0.0994 0.347 CD8_TCM L2
ENSG00000177606 JUN -548848 sc-eQTL 2.99e-01 0.073 0.0701 0.347 CD8_TCM L2
ENSG00000162600 OMA1 -311603 sc-eQTL 1.20e-01 -0.15 0.0962 0.356 CD8_TEM L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 8.99e-01 -0.0124 0.0978 0.356 CD8_TEM L2
ENSG00000177606 JUN -548848 sc-eQTL 4.87e-01 0.0489 0.0703 0.356 CD8_TEM L2
ENSG00000162600 OMA1 -311603 sc-eQTL 6.26e-01 -0.046 0.0941 0.353 MAIT L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 4.74e-02 -0.198 0.0991 0.353 MAIT L2
ENSG00000173406 DAB1 -311535 sc-eQTL 1.34e-01 -0.131 0.0874 0.353 MAIT L2
ENSG00000177606 JUN -548848 sc-eQTL 8.28e-01 0.0149 0.0685 0.353 MAIT L2
ENSG00000162600 OMA1 -311603 sc-eQTL 8.98e-01 -0.0123 0.0956 0.342 NK_CD56bright L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 4.33e-01 -0.0725 0.0922 0.342 NK_CD56bright L2
ENSG00000177606 JUN -548848 sc-eQTL 8.82e-01 0.0105 0.0706 0.342 NK_CD56bright L2
ENSG00000162600 OMA1 -311603 sc-eQTL 7.06e-01 -0.0308 0.0814 0.347 NK_CD56dim L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 2.22e-01 -0.088 0.0719 0.347 NK_CD56dim L2
ENSG00000177606 JUN -548848 sc-eQTL 8.44e-01 0.0124 0.063 0.347 NK_CD56dim L2
ENSG00000162600 OMA1 -311603 sc-eQTL 8.29e-01 0.0201 0.093 0.345 NK_HLA L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 8.80e-01 -0.0139 0.092 0.345 NK_HLA L2
ENSG00000177606 JUN -548848 sc-eQTL 1.12e-01 0.132 0.0828 0.345 NK_HLA L2
ENSG00000162600 OMA1 -311603 sc-eQTL 6.84e-01 -0.0357 0.0876 0.347 NK_cytokine L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 8.16e-01 0.0185 0.0795 0.347 NK_cytokine L2
ENSG00000177606 JUN -548848 sc-eQTL 4.71e-01 0.0447 0.062 0.347 NK_cytokine L2
ENSG00000162600 OMA1 -311603 sc-eQTL 8.17e-02 0.195 0.111 0.356 PB L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 9.28e-01 -0.00955 0.106 0.356 PB L2
ENSG00000177606 JUN -548848 sc-eQTL 4.36e-01 0.086 0.11 0.356 PB L2
ENSG00000237352 LINC01358 -698444 sc-eQTL 3.04e-02 0.194 0.0885 0.356 PB L2
ENSG00000162600 OMA1 -311603 sc-eQTL 3.06e-01 0.0853 0.0831 0.354 Pro_T L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 6.43e-01 0.045 0.0971 0.354 Pro_T L2
ENSG00000173406 DAB1 -311535 sc-eQTL 9.22e-02 0.11 0.0653 0.354 Pro_T L2
ENSG00000177606 JUN -548848 sc-eQTL 2.01e-01 0.0802 0.0625 0.354 Pro_T L2
ENSG00000162600 OMA1 -311603 sc-eQTL 3.85e-01 -0.0724 0.0832 0.35 Treg L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 6.18e-02 0.165 0.0877 0.35 Treg L2
ENSG00000177606 JUN -548848 sc-eQTL 2.96e-01 0.0527 0.0503 0.35 Treg L2
ENSG00000162600 OMA1 -311603 sc-eQTL 2.09e-01 -0.11 0.0874 0.339 cDC L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 6.57e-02 -0.18 0.0969 0.339 cDC L2
ENSG00000177606 JUN -548848 sc-eQTL 2.62e-01 0.088 0.0782 0.339 cDC L2
ENSG00000162600 OMA1 -311603 sc-eQTL 2.03e-01 0.0939 0.0735 0.35 cMono_IL1B L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 4.21e-02 0.158 0.0772 0.35 cMono_IL1B L2
ENSG00000177606 JUN -548848 sc-eQTL 6.71e-01 0.0289 0.068 0.35 cMono_IL1B L2
ENSG00000162600 OMA1 -311603 sc-eQTL 3.18e-01 0.0841 0.0841 0.35 cMono_S100A L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 6.12e-01 0.0436 0.0857 0.35 cMono_S100A L2
ENSG00000177606 JUN -548848 sc-eQTL 8.49e-01 0.0149 0.0783 0.35 cMono_S100A L2
ENSG00000162600 OMA1 -311603 sc-eQTL 2.11e-02 -0.229 0.0983 0.342 gdT L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 9.14e-02 -0.202 0.119 0.342 gdT L2
ENSG00000173406 DAB1 -311535 sc-eQTL 2.36e-02 0.171 0.0745 0.342 gdT L2
ENSG00000177606 JUN -548848 sc-eQTL 7.42e-01 -0.0247 0.075 0.342 gdT L2
ENSG00000162600 OMA1 -311603 sc-eQTL 2.39e-01 -0.107 0.0903 0.347 intMono L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 3.57e-01 -0.0918 0.0994 0.347 intMono L2
ENSG00000177606 JUN -548848 sc-eQTL 5.03e-01 0.0513 0.0764 0.347 intMono L2
ENSG00000162600 OMA1 -311603 sc-eQTL 6.37e-01 0.0355 0.0751 0.342 ncMono L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 2.77e-01 0.105 0.0964 0.342 ncMono L2
ENSG00000177606 JUN -548848 sc-eQTL 1.27e-01 0.112 0.0728 0.342 ncMono L2
ENSG00000162600 OMA1 -311603 sc-eQTL 7.94e-02 -0.166 0.0941 0.336 pDC L2
ENSG00000162601 MYSM1 -464878 sc-eQTL 8.21e-01 0.0231 0.102 0.336 pDC L2
ENSG00000177606 JUN -548848 sc-eQTL 8.33e-02 0.151 0.0867 0.336 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -311603 sc-eQTL 2.08e-01 -0.102 0.0807 0.35 B_Memory LOneK1K
ENSG00000162601 MYSM1 -464878 sc-eQTL 7.12e-01 0.0286 0.0773 0.35 B_Memory LOneK1K
ENSG00000177606 JUN -548848 sc-eQTL 2.22e-01 0.0731 0.0597 0.35 B_Memory LOneK1K
ENSG00000237352 LINC01358 -698444 sc-eQTL 1.26e-01 0.135 0.0879 0.35 B_Memory LOneK1K
ENSG00000162600 OMA1 -311603 sc-eQTL 9.61e-01 -0.00342 0.0693 0.35 B_Naive LOneK1K
ENSG00000162601 MYSM1 -464878 sc-eQTL 6.99e-01 0.0268 0.0692 0.35 B_Naive LOneK1K
ENSG00000177606 JUN -548848 sc-eQTL 3.76e-01 0.0515 0.0581 0.35 B_Naive LOneK1K
ENSG00000237352 LINC01358 -698444 sc-eQTL 2.14e-01 0.107 0.0861 0.35 B_Naive LOneK1K
ENSG00000162600 OMA1 -311603 sc-eQTL 2.36e-01 0.0835 0.0703 0.35 CD14_Mono LOneK1K
ENSG00000162601 MYSM1 -464878 sc-eQTL 8.83e-03 0.185 0.07 0.35 CD14_Mono LOneK1K
ENSG00000177606 JUN -548848 sc-eQTL 1.86e-01 0.0903 0.068 0.35 CD14_Mono LOneK1K
ENSG00000162600 OMA1 -311603 sc-eQTL 4.46e-01 -0.055 0.072 0.347 CD16_Mono LOneK1K
ENSG00000162601 MYSM1 -464878 sc-eQTL 6.18e-01 0.0451 0.0905 0.347 CD16_Mono LOneK1K
ENSG00000177606 JUN -548848 sc-eQTL 2.85e-01 0.0744 0.0694 0.347 CD16_Mono LOneK1K
ENSG00000162600 OMA1 -311603 sc-eQTL 4.11e-01 -0.0624 0.0758 0.347 NK_CD56dim LOneK1K
ENSG00000162601 MYSM1 -464878 sc-eQTL 6.41e-01 -0.0296 0.0634 0.347 NK_CD56dim LOneK1K
ENSG00000177606 JUN -548848 sc-eQTL 6.79e-01 0.0236 0.0569 0.347 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000184292 TACSTD2 -342574 eQTL 0.0393 -0.0465 0.0226 0.0 0.0 0.347

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000184292 TACSTD2 -342574 1.29e-06 9.48e-07 2.79e-07 3.96e-07 2.48e-07 4.35e-07 1.08e-06 3.45e-07 1.13e-06 3.76e-07 1.35e-06 5.86e-07 1.65e-06 2.57e-07 4.28e-07 6.72e-07 7.74e-07 5.8e-07 5.34e-07 4.95e-07 3.5e-07 9.67e-07 7.63e-07 5.76e-07 1.92e-06 3.06e-07 6.37e-07 5.67e-07 9.81e-07 1.12e-06 5.3e-07 5.06e-08 2.17e-07 4.57e-07 3.84e-07 3.98e-07 3.65e-07 1.56e-07 2.19e-07 8.98e-08 2.32e-07 1.43e-06 5.65e-08 4.16e-08 1.85e-07 7.43e-08 1.9e-07 8.97e-08 8.21e-08