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Genes within 1Mb (chr1:58170888:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -375914 sc-eQTL 3.96e-01 -0.0649 0.0764 0.81 B L1
ENSG00000162601 MYSM1 -529189 sc-eQTL 7.91e-01 -0.0213 0.0805 0.81 B L1
ENSG00000177606 JUN -613159 sc-eQTL 8.39e-01 0.0147 0.0722 0.81 B L1
ENSG00000237352 LINC01358 -762755 sc-eQTL 2.15e-01 -0.106 0.0853 0.81 B L1
ENSG00000162600 OMA1 -375914 sc-eQTL 7.70e-01 0.0177 0.0606 0.81 CD4T L1
ENSG00000162601 MYSM1 -529189 sc-eQTL 5.12e-02 -0.118 0.06 0.81 CD4T L1
ENSG00000177606 JUN -613159 sc-eQTL 6.71e-01 -0.0293 0.069 0.81 CD4T L1
ENSG00000162600 OMA1 -375914 sc-eQTL 1.02e-01 -0.136 0.0826 0.81 CD8T L1
ENSG00000162601 MYSM1 -529189 sc-eQTL 6.99e-01 -0.0295 0.0761 0.81 CD8T L1
ENSG00000177606 JUN -613159 sc-eQTL 5.74e-01 -0.0364 0.0646 0.81 CD8T L1
ENSG00000162600 OMA1 -375914 sc-eQTL 6.21e-03 0.278 0.1 0.813 DC L1
ENSG00000162601 MYSM1 -529189 sc-eQTL 1.55e-01 0.168 0.118 0.813 DC L1
ENSG00000177606 JUN -613159 sc-eQTL 7.81e-01 0.0284 0.102 0.813 DC L1
ENSG00000162600 OMA1 -375914 sc-eQTL 1.96e-01 -0.0997 0.0769 0.81 Mono L1
ENSG00000162601 MYSM1 -529189 sc-eQTL 1.61e-02 -0.219 0.0902 0.81 Mono L1
ENSG00000177606 JUN -613159 sc-eQTL 5.24e-01 0.0515 0.0806 0.81 Mono L1
ENSG00000162600 OMA1 -375914 sc-eQTL 1.36e-01 0.14 0.0939 0.809 NK L1
ENSG00000162601 MYSM1 -529189 sc-eQTL 1.43e-01 -0.114 0.0778 0.809 NK L1
ENSG00000177606 JUN -613159 sc-eQTL 7.76e-01 -0.0201 0.0706 0.809 NK L1
ENSG00000162600 OMA1 -375914 sc-eQTL 7.02e-01 0.0377 0.0984 0.81 Other_T L1
ENSG00000162601 MYSM1 -529189 sc-eQTL 2.00e-02 0.261 0.111 0.81 Other_T L1
ENSG00000173406 DAB1 -375846 sc-eQTL 1.51e-01 -0.144 0.0997 0.81 Other_T L1
ENSG00000177606 JUN -613159 sc-eQTL 8.79e-01 -0.00997 0.0653 0.81 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -375914 sc-eQTL 3.76e-01 -0.107 0.12 0.806 B_Activated L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 8.57e-01 -0.0237 0.131 0.806 B_Activated L2
ENSG00000177606 JUN -613159 sc-eQTL 4.88e-01 -0.076 0.11 0.806 B_Activated L2
ENSG00000237352 LINC01358 -762755 sc-eQTL 3.68e-01 -0.101 0.111 0.806 B_Activated L2
ENSG00000162600 OMA1 -375914 sc-eQTL 6.11e-02 -0.204 0.108 0.809 B_Intermediate L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 4.46e-01 0.0822 0.108 0.809 B_Intermediate L2
ENSG00000177606 JUN -613159 sc-eQTL 8.95e-01 0.0101 0.077 0.809 B_Intermediate L2
ENSG00000237352 LINC01358 -762755 sc-eQTL 8.20e-01 -0.0236 0.104 0.809 B_Intermediate L2
ENSG00000162600 OMA1 -375914 sc-eQTL 5.38e-01 0.0659 0.107 0.812 B_Memory L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 1.53e-01 0.166 0.116 0.812 B_Memory L2
ENSG00000177606 JUN -613159 sc-eQTL 6.82e-01 0.0357 0.0869 0.812 B_Memory L2
ENSG00000237352 LINC01358 -762755 sc-eQTL 1.31e-01 -0.158 0.104 0.812 B_Memory L2
ENSG00000162600 OMA1 -375914 sc-eQTL 3.41e-01 -0.0949 0.0994 0.81 B_Naive1 L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 4.76e-01 0.0614 0.0861 0.81 B_Naive1 L2
ENSG00000177606 JUN -613159 sc-eQTL 6.66e-01 -0.0308 0.0714 0.81 B_Naive1 L2
ENSG00000237352 LINC01358 -762755 sc-eQTL 8.88e-01 0.0144 0.102 0.81 B_Naive1 L2
ENSG00000162600 OMA1 -375914 sc-eQTL 9.13e-01 0.0121 0.111 0.811 B_Naive2 L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 3.25e-01 -0.106 0.108 0.811 B_Naive2 L2
ENSG00000177606 JUN -613159 sc-eQTL 2.92e-01 0.087 0.0824 0.811 B_Naive2 L2
ENSG00000237352 LINC01358 -762755 sc-eQTL 4.42e-01 -0.0753 0.0977 0.811 B_Naive2 L2
ENSG00000162600 OMA1 -375914 sc-eQTL 2.80e-01 -0.134 0.124 0.814 CD4_CTL L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 4.32e-01 0.1 0.128 0.814 CD4_CTL L2
ENSG00000177606 JUN -613159 sc-eQTL 5.09e-01 -0.0674 0.102 0.814 CD4_CTL L2
ENSG00000162600 OMA1 -375914 sc-eQTL 7.51e-01 -0.0238 0.0749 0.81 CD4_Naive L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 1.05e-01 -0.115 0.0705 0.81 CD4_Naive L2
ENSG00000177606 JUN -613159 sc-eQTL 9.82e-01 0.00155 0.0683 0.81 CD4_Naive L2
ENSG00000162600 OMA1 -375914 sc-eQTL 4.72e-01 0.0576 0.0799 0.81 CD4_TCM L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 5.98e-01 -0.044 0.0833 0.81 CD4_TCM L2
ENSG00000177606 JUN -613159 sc-eQTL 5.80e-02 -0.146 0.0765 0.81 CD4_TCM L2
ENSG00000162600 OMA1 -375914 sc-eQTL 6.64e-01 0.0488 0.112 0.81 CD4_TEM L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 1.98e-01 -0.137 0.106 0.81 CD4_TEM L2
ENSG00000177606 JUN -613159 sc-eQTL 9.11e-01 -0.00992 0.089 0.81 CD4_TEM L2
ENSG00000162600 OMA1 -375914 sc-eQTL 9.17e-01 0.0117 0.112 0.81 CD8_CTL L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 8.33e-01 0.0194 0.0919 0.81 CD8_CTL L2
ENSG00000177606 JUN -613159 sc-eQTL 6.05e-01 -0.0404 0.0781 0.81 CD8_CTL L2
ENSG00000162600 OMA1 -375914 sc-eQTL 9.97e-02 -0.157 0.0947 0.81 CD8_Naive L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 7.66e-01 0.0288 0.0966 0.81 CD8_Naive L2
ENSG00000177606 JUN -613159 sc-eQTL 5.52e-01 -0.0493 0.0827 0.81 CD8_Naive L2
ENSG00000162600 OMA1 -375914 sc-eQTL 4.42e-02 -0.236 0.116 0.81 CD8_TCM L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 5.89e-01 -0.0693 0.128 0.81 CD8_TCM L2
ENSG00000177606 JUN -613159 sc-eQTL 6.23e-01 0.0447 0.0906 0.81 CD8_TCM L2
ENSG00000162600 OMA1 -375914 sc-eQTL 8.89e-01 -0.0172 0.123 0.806 CD8_TEM L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 4.86e-01 0.0865 0.124 0.806 CD8_TEM L2
ENSG00000177606 JUN -613159 sc-eQTL 6.04e-01 -0.0465 0.0893 0.806 CD8_TEM L2
ENSG00000162600 OMA1 -375914 sc-eQTL 6.90e-01 0.0469 0.118 0.81 MAIT L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 2.35e-01 0.148 0.125 0.81 MAIT L2
ENSG00000173406 DAB1 -375846 sc-eQTL 4.40e-01 -0.0848 0.11 0.81 MAIT L2
ENSG00000177606 JUN -613159 sc-eQTL 4.44e-01 0.0656 0.0855 0.81 MAIT L2
ENSG00000162600 OMA1 -375914 sc-eQTL 4.55e-01 0.0916 0.122 0.809 NK_CD56bright L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 2.65e-01 0.132 0.118 0.809 NK_CD56bright L2
ENSG00000177606 JUN -613159 sc-eQTL 7.94e-01 0.0237 0.0905 0.809 NK_CD56bright L2
ENSG00000162600 OMA1 -375914 sc-eQTL 5.80e-01 -0.0566 0.102 0.81 NK_CD56dim L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 3.70e-01 -0.0813 0.0905 0.81 NK_CD56dim L2
ENSG00000177606 JUN -613159 sc-eQTL 4.69e-01 -0.0574 0.0791 0.81 NK_CD56dim L2
ENSG00000162600 OMA1 -375914 sc-eQTL 6.68e-01 0.0514 0.12 0.808 NK_HLA L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 7.37e-01 -0.0398 0.118 0.808 NK_HLA L2
ENSG00000177606 JUN -613159 sc-eQTL 7.16e-01 -0.039 0.107 0.808 NK_HLA L2
ENSG00000162600 OMA1 -375914 sc-eQTL 3.76e-02 0.225 0.107 0.81 NK_cytokine L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 8.37e-01 -0.0202 0.0984 0.81 NK_cytokine L2
ENSG00000177606 JUN -613159 sc-eQTL 8.67e-01 -0.0129 0.0768 0.81 NK_cytokine L2
ENSG00000162600 OMA1 -375914 sc-eQTL 7.85e-01 -0.0387 0.141 0.826 PB L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 8.62e-01 -0.0232 0.133 0.826 PB L2
ENSG00000177606 JUN -613159 sc-eQTL 9.79e-01 -0.00366 0.139 0.826 PB L2
ENSG00000237352 LINC01358 -762755 sc-eQTL 7.80e-02 -0.199 0.112 0.826 PB L2
ENSG00000162600 OMA1 -375914 sc-eQTL 3.77e-01 0.0938 0.106 0.809 Pro_T L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 2.31e-01 0.148 0.123 0.809 Pro_T L2
ENSG00000173406 DAB1 -375846 sc-eQTL 1.61e-01 -0.117 0.0834 0.809 Pro_T L2
ENSG00000177606 JUN -613159 sc-eQTL 4.27e-01 -0.0635 0.0799 0.809 Pro_T L2
ENSG00000162600 OMA1 -375914 sc-eQTL 6.91e-01 0.0417 0.105 0.81 Treg L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 2.30e-02 -0.251 0.11 0.81 Treg L2
ENSG00000177606 JUN -613159 sc-eQTL 9.70e-01 0.00238 0.0632 0.81 Treg L2
ENSG00000162600 OMA1 -375914 sc-eQTL 5.27e-04 0.377 0.107 0.815 cDC L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 2.10e-01 0.154 0.123 0.815 cDC L2
ENSG00000177606 JUN -613159 sc-eQTL 8.14e-01 0.0233 0.0988 0.815 cDC L2
ENSG00000162600 OMA1 -375914 sc-eQTL 2.90e-01 -0.0975 0.0918 0.81 cMono_IL1B L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 7.61e-01 -0.0296 0.0972 0.81 cMono_IL1B L2
ENSG00000177606 JUN -613159 sc-eQTL 4.84e-01 0.0594 0.0847 0.81 cMono_IL1B L2
ENSG00000162600 OMA1 -375914 sc-eQTL 1.90e-01 -0.137 0.104 0.81 cMono_S100A L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 4.98e-02 -0.208 0.105 0.81 cMono_S100A L2
ENSG00000177606 JUN -613159 sc-eQTL 5.20e-01 0.0625 0.097 0.81 cMono_S100A L2
ENSG00000162600 OMA1 -375914 sc-eQTL 5.89e-01 0.0687 0.127 0.794 gdT L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 1.07e-01 0.244 0.151 0.794 gdT L2
ENSG00000173406 DAB1 -375846 sc-eQTL 6.03e-01 -0.0501 0.0962 0.794 gdT L2
ENSG00000177606 JUN -613159 sc-eQTL 4.11e-01 -0.0783 0.095 0.794 gdT L2
ENSG00000162600 OMA1 -375914 sc-eQTL 3.03e-01 -0.116 0.112 0.809 intMono L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 8.57e-01 -0.0224 0.124 0.809 intMono L2
ENSG00000177606 JUN -613159 sc-eQTL 2.71e-01 0.105 0.0949 0.809 intMono L2
ENSG00000162600 OMA1 -375914 sc-eQTL 9.79e-01 0.00247 0.0957 0.81 ncMono L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 6.45e-02 -0.227 0.122 0.81 ncMono L2
ENSG00000177606 JUN -613159 sc-eQTL 8.60e-01 -0.0165 0.0933 0.81 ncMono L2
ENSG00000162600 OMA1 -375914 sc-eQTL 9.57e-01 0.00657 0.121 0.814 pDC L2
ENSG00000162601 MYSM1 -529189 sc-eQTL 3.88e-01 0.112 0.129 0.814 pDC L2
ENSG00000177606 JUN -613159 sc-eQTL 8.63e-01 -0.0192 0.111 0.814 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -375914 sc-eQTL 1.97e-01 -0.131 0.101 0.81 B_Memory LOneK1K
ENSG00000162601 MYSM1 -529189 sc-eQTL 3.13e-01 0.0981 0.0969 0.81 B_Memory LOneK1K
ENSG00000177606 JUN -613159 sc-eQTL 9.69e-01 -0.00291 0.0752 0.81 B_Memory LOneK1K
ENSG00000237352 LINC01358 -762755 sc-eQTL 2.52e-01 -0.127 0.111 0.81 B_Memory LOneK1K
ENSG00000162600 OMA1 -375914 sc-eQTL 4.50e-01 -0.066 0.0873 0.81 B_Naive LOneK1K
ENSG00000162601 MYSM1 -529189 sc-eQTL 8.38e-01 0.0179 0.0873 0.81 B_Naive LOneK1K
ENSG00000177606 JUN -613159 sc-eQTL 6.53e-01 0.033 0.0733 0.81 B_Naive LOneK1K
ENSG00000237352 LINC01358 -762755 sc-eQTL 9.71e-01 -0.00396 0.109 0.81 B_Naive LOneK1K
ENSG00000162600 OMA1 -375914 sc-eQTL 2.01e-01 -0.112 0.0874 0.81 CD14_Mono LOneK1K
ENSG00000162601 MYSM1 -529189 sc-eQTL 5.26e-02 -0.171 0.0876 0.81 CD14_Mono LOneK1K
ENSG00000177606 JUN -613159 sc-eQTL 6.66e-01 0.0367 0.0849 0.81 CD14_Mono LOneK1K
ENSG00000162600 OMA1 -375914 sc-eQTL 8.85e-01 -0.013 0.0894 0.808 CD16_Mono LOneK1K
ENSG00000162601 MYSM1 -529189 sc-eQTL 2.54e-01 -0.128 0.112 0.808 CD16_Mono LOneK1K
ENSG00000177606 JUN -613159 sc-eQTL 6.69e-01 0.0369 0.0862 0.808 CD16_Mono LOneK1K
ENSG00000162600 OMA1 -375914 sc-eQTL 2.04e-01 0.12 0.0944 0.81 NK_CD56dim LOneK1K
ENSG00000162601 MYSM1 -529189 sc-eQTL 1.54e-01 -0.113 0.0788 0.81 NK_CD56dim LOneK1K
ENSG00000177606 JUN -613159 sc-eQTL 6.60e-01 -0.0313 0.0711 0.81 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000177606 JUN -613439 pQTL 0.0234 0.0493 0.0217 0.0 0.0 0.189
ENSG00000184292 TACSTD2 -406885 eQTL 0.0183 0.0653 0.0276 0.0 0.0 0.19

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000184292 TACSTD2 -406885 9.47e-07 8.16e-07 1.11e-07 4.1e-07 1.07e-07 2.08e-07 5.8e-07 1.37e-07 4.61e-07 2.57e-07 8.58e-07 4.28e-07 8.37e-07 1.58e-07 2.44e-07 2.23e-07 3.69e-07 3.95e-07 2.13e-07 1.41e-07 1.91e-07 3.87e-07 3.87e-07 1.76e-07 9.71e-07 2.49e-07 2.71e-07 2.65e-07 3.83e-07 5.99e-07 3.68e-07 6.92e-08 6.08e-08 1.49e-07 3.4e-07 8.32e-08 1.02e-07 6.67e-08 6.49e-08 8.51e-09 7.48e-08 6.11e-07 4.3e-08 1.77e-08 1.17e-07 1.81e-08 8.75e-08 7.25e-09 5.71e-08