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Genes within 1Mb (chr1:58068492:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -478310 sc-eQTL 9.33e-01 -0.00507 0.0604 0.38 B L1
ENSG00000162601 MYSM1 -631585 sc-eQTL 7.17e-01 -0.023 0.0634 0.38 B L1
ENSG00000177606 JUN -715555 sc-eQTL 3.86e-01 0.0494 0.0568 0.38 B L1
ENSG00000237352 LINC01358 -865151 sc-eQTL 5.00e-01 0.0456 0.0674 0.38 B L1
ENSG00000162600 OMA1 -478310 sc-eQTL 7.34e-01 -0.0162 0.0474 0.38 CD4T L1
ENSG00000162601 MYSM1 -631585 sc-eQTL 3.21e-01 0.047 0.0473 0.38 CD4T L1
ENSG00000177606 JUN -715555 sc-eQTL 1.95e-01 0.07 0.0538 0.38 CD4T L1
ENSG00000162600 OMA1 -478310 sc-eQTL 3.97e-01 0.0549 0.0647 0.38 CD8T L1
ENSG00000162601 MYSM1 -631585 sc-eQTL 7.12e-01 -0.0219 0.0594 0.38 CD8T L1
ENSG00000177606 JUN -715555 sc-eQTL 1.58e-01 0.0711 0.0502 0.38 CD8T L1
ENSG00000162600 OMA1 -478310 sc-eQTL 9.52e-01 -0.00471 0.0787 0.381 DC L1
ENSG00000162601 MYSM1 -631585 sc-eQTL 1.51e-01 -0.131 0.0907 0.381 DC L1
ENSG00000177606 JUN -715555 sc-eQTL 3.30e-01 0.0766 0.0783 0.381 DC L1
ENSG00000162600 OMA1 -478310 sc-eQTL 9.89e-01 -0.000809 0.0608 0.38 Mono L1
ENSG00000162601 MYSM1 -631585 sc-eQTL 6.80e-01 0.0298 0.0721 0.38 Mono L1
ENSG00000177606 JUN -715555 sc-eQTL 1.56e-01 -0.0901 0.0633 0.38 Mono L1
ENSG00000162600 OMA1 -478310 sc-eQTL 9.15e-01 -0.00802 0.075 0.382 NK L1
ENSG00000162601 MYSM1 -631585 sc-eQTL 8.40e-01 -0.0125 0.0621 0.382 NK L1
ENSG00000177606 JUN -715555 sc-eQTL 1.10e-01 0.0893 0.0557 0.382 NK L1
ENSG00000162600 OMA1 -478310 sc-eQTL 6.08e-01 0.0395 0.0769 0.38 Other_T L1
ENSG00000162601 MYSM1 -631585 sc-eQTL 2.53e-01 -0.101 0.0879 0.38 Other_T L1
ENSG00000173406 DAB1 -478242 sc-eQTL 3.32e-01 0.0759 0.0782 0.38 Other_T L1
ENSG00000177606 JUN -715555 sc-eQTL 6.59e-01 0.0226 0.0511 0.38 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -478310 sc-eQTL 3.99e-01 0.0783 0.0926 0.388 B_Activated L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 6.95e-01 0.0398 0.101 0.388 B_Activated L2
ENSG00000177606 JUN -715555 sc-eQTL 5.58e-01 0.0495 0.0843 0.388 B_Activated L2
ENSG00000237352 LINC01358 -865151 sc-eQTL 9.62e-01 -0.00407 0.0858 0.388 B_Activated L2
ENSG00000162600 OMA1 -478310 sc-eQTL 8.25e-02 0.149 0.0852 0.382 B_Intermediate L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 5.17e-01 0.0549 0.0846 0.382 B_Intermediate L2
ENSG00000177606 JUN -715555 sc-eQTL 8.57e-01 -0.0109 0.0604 0.382 B_Intermediate L2
ENSG00000237352 LINC01358 -865151 sc-eQTL 4.20e-01 -0.0656 0.0812 0.382 B_Intermediate L2
ENSG00000162600 OMA1 -478310 sc-eQTL 2.95e-02 -0.181 0.0826 0.381 B_Memory L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 6.32e-02 -0.169 0.0903 0.381 B_Memory L2
ENSG00000177606 JUN -715555 sc-eQTL 5.20e-01 0.0437 0.0678 0.381 B_Memory L2
ENSG00000237352 LINC01358 -865151 sc-eQTL 6.99e-03 0.22 0.0806 0.381 B_Memory L2
ENSG00000162600 OMA1 -478310 sc-eQTL 8.70e-01 -0.0126 0.0771 0.38 B_Naive1 L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 5.35e-01 -0.0415 0.0667 0.38 B_Naive1 L2
ENSG00000177606 JUN -715555 sc-eQTL 5.91e-01 0.0297 0.0553 0.38 B_Naive1 L2
ENSG00000237352 LINC01358 -865151 sc-eQTL 9.92e-01 0.000772 0.0791 0.38 B_Naive1 L2
ENSG00000162600 OMA1 -478310 sc-eQTL 7.61e-01 0.0265 0.0871 0.38 B_Naive2 L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 7.59e-01 0.026 0.0847 0.38 B_Naive2 L2
ENSG00000177606 JUN -715555 sc-eQTL 2.96e-01 0.0677 0.0646 0.38 B_Naive2 L2
ENSG00000237352 LINC01358 -865151 sc-eQTL 8.62e-01 -0.0134 0.0767 0.38 B_Naive2 L2
ENSG00000162600 OMA1 -478310 sc-eQTL 1.15e-01 -0.152 0.0961 0.375 CD4_CTL L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 1.30e-01 -0.151 0.0992 0.375 CD4_CTL L2
ENSG00000177606 JUN -715555 sc-eQTL 2.48e-02 0.178 0.0787 0.375 CD4_CTL L2
ENSG00000162600 OMA1 -478310 sc-eQTL 6.93e-01 -0.023 0.0582 0.38 CD4_Naive L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 3.00e-01 0.0571 0.055 0.38 CD4_Naive L2
ENSG00000177606 JUN -715555 sc-eQTL 1.06e-01 0.0856 0.0527 0.38 CD4_Naive L2
ENSG00000162600 OMA1 -478310 sc-eQTL 6.74e-01 0.0261 0.0621 0.38 CD4_TCM L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 8.27e-01 -0.0142 0.0647 0.38 CD4_TCM L2
ENSG00000177606 JUN -715555 sc-eQTL 5.08e-01 0.0397 0.0598 0.38 CD4_TCM L2
ENSG00000162600 OMA1 -478310 sc-eQTL 3.47e-01 -0.0819 0.0869 0.38 CD4_TEM L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 9.59e-01 -0.00429 0.083 0.38 CD4_TEM L2
ENSG00000177606 JUN -715555 sc-eQTL 4.59e-01 0.0512 0.069 0.38 CD4_TEM L2
ENSG00000162600 OMA1 -478310 sc-eQTL 8.67e-01 0.0148 0.088 0.38 CD8_CTL L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 8.46e-02 0.124 0.0715 0.38 CD8_CTL L2
ENSG00000177606 JUN -715555 sc-eQTL 1.16e-02 0.153 0.0603 0.38 CD8_CTL L2
ENSG00000162600 OMA1 -478310 sc-eQTL 7.45e-01 -0.0241 0.0742 0.38 CD8_Naive L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 1.68e-01 -0.104 0.0749 0.38 CD8_Naive L2
ENSG00000177606 JUN -715555 sc-eQTL 2.19e-01 0.0791 0.0642 0.38 CD8_Naive L2
ENSG00000162600 OMA1 -478310 sc-eQTL 3.93e-01 0.0773 0.0903 0.377 CD8_TCM L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 9.37e-01 -0.00776 0.0985 0.377 CD8_TCM L2
ENSG00000177606 JUN -715555 sc-eQTL 7.84e-01 0.0191 0.0697 0.377 CD8_TCM L2
ENSG00000162600 OMA1 -478310 sc-eQTL 9.34e-03 0.248 0.0943 0.386 CD8_TEM L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 2.27e-01 -0.117 0.0965 0.386 CD8_TEM L2
ENSG00000177606 JUN -715555 sc-eQTL 1.36e-02 0.171 0.0687 0.386 CD8_TEM L2
ENSG00000162600 OMA1 -478310 sc-eQTL 8.28e-01 -0.0197 0.0904 0.381 MAIT L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 7.14e-01 -0.0353 0.0961 0.381 MAIT L2
ENSG00000173406 DAB1 -478242 sc-eQTL 3.58e-01 0.0776 0.0843 0.381 MAIT L2
ENSG00000177606 JUN -715555 sc-eQTL 7.75e-01 0.0189 0.0658 0.381 MAIT L2
ENSG00000162600 OMA1 -478310 sc-eQTL 3.48e-01 0.0867 0.0921 0.38 NK_CD56bright L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 6.56e-01 -0.0397 0.0891 0.38 NK_CD56bright L2
ENSG00000177606 JUN -715555 sc-eQTL 3.13e-03 0.199 0.0667 0.38 NK_CD56bright L2
ENSG00000162600 OMA1 -478310 sc-eQTL 6.65e-01 -0.0351 0.0808 0.381 NK_CD56dim L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 9.90e-01 -0.000915 0.0716 0.381 NK_CD56dim L2
ENSG00000177606 JUN -715555 sc-eQTL 5.54e-02 0.12 0.0621 0.381 NK_CD56dim L2
ENSG00000162600 OMA1 -478310 sc-eQTL 6.56e-01 0.0406 0.0911 0.377 NK_HLA L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 3.73e-01 -0.0803 0.09 0.377 NK_HLA L2
ENSG00000177606 JUN -715555 sc-eQTL 7.16e-02 0.147 0.081 0.377 NK_HLA L2
ENSG00000162600 OMA1 -478310 sc-eQTL 7.05e-01 0.0323 0.0853 0.381 NK_cytokine L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 8.43e-01 -0.0153 0.0774 0.381 NK_cytokine L2
ENSG00000177606 JUN -715555 sc-eQTL 6.50e-02 0.111 0.0599 0.381 NK_cytokine L2
ENSG00000162600 OMA1 -478310 sc-eQTL 3.37e-01 0.104 0.107 0.389 PB L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 9.00e-01 -0.0129 0.102 0.389 PB L2
ENSG00000177606 JUN -715555 sc-eQTL 8.09e-01 0.0257 0.106 0.389 PB L2
ENSG00000237352 LINC01358 -865151 sc-eQTL 2.46e-01 0.101 0.0862 0.389 PB L2
ENSG00000162600 OMA1 -478310 sc-eQTL 6.30e-01 -0.0402 0.0833 0.378 Pro_T L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 2.52e-01 0.111 0.0969 0.378 Pro_T L2
ENSG00000173406 DAB1 -478242 sc-eQTL 3.46e-01 -0.062 0.0656 0.378 Pro_T L2
ENSG00000177606 JUN -715555 sc-eQTL 7.35e-01 0.0213 0.0628 0.378 Pro_T L2
ENSG00000162600 OMA1 -478310 sc-eQTL 4.25e-01 0.0663 0.0829 0.38 Treg L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 1.69e-02 0.209 0.0869 0.38 Treg L2
ENSG00000177606 JUN -715555 sc-eQTL 5.05e-01 0.0335 0.0502 0.38 Treg L2
ENSG00000162600 OMA1 -478310 sc-eQTL 5.75e-01 -0.0477 0.0851 0.373 cDC L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 2.81e-01 -0.102 0.0946 0.373 cDC L2
ENSG00000177606 JUN -715555 sc-eQTL 3.26e-01 0.0748 0.076 0.373 cDC L2
ENSG00000162600 OMA1 -478310 sc-eQTL 8.74e-01 -0.0113 0.0716 0.38 cMono_IL1B L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 6.79e-01 -0.0313 0.0756 0.38 cMono_IL1B L2
ENSG00000177606 JUN -715555 sc-eQTL 4.27e-01 -0.0524 0.0659 0.38 cMono_IL1B L2
ENSG00000162600 OMA1 -478310 sc-eQTL 8.89e-01 -0.0113 0.0811 0.38 cMono_S100A L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 2.22e-01 0.101 0.0822 0.38 cMono_S100A L2
ENSG00000177606 JUN -715555 sc-eQTL 3.98e-01 -0.0637 0.0753 0.38 cMono_S100A L2
ENSG00000162600 OMA1 -478310 sc-eQTL 5.35e-01 -0.0615 0.0987 0.376 gdT L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 4.29e-01 -0.0936 0.118 0.376 gdT L2
ENSG00000173406 DAB1 -478242 sc-eQTL 9.88e-01 -0.00116 0.0749 0.376 gdT L2
ENSG00000177606 JUN -715555 sc-eQTL 5.20e-02 0.143 0.0731 0.376 gdT L2
ENSG00000162600 OMA1 -478310 sc-eQTL 6.70e-01 0.0376 0.088 0.378 intMono L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 6.01e-01 -0.0507 0.0968 0.378 intMono L2
ENSG00000177606 JUN -715555 sc-eQTL 8.12e-01 0.0177 0.0744 0.378 intMono L2
ENSG00000162600 OMA1 -478310 sc-eQTL 5.30e-01 -0.047 0.0748 0.369 ncMono L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 3.01e-03 0.283 0.0941 0.369 ncMono L2
ENSG00000177606 JUN -715555 sc-eQTL 7.44e-01 -0.0239 0.0729 0.369 ncMono L2
ENSG00000162600 OMA1 -478310 sc-eQTL 6.53e-01 0.0415 0.0919 0.381 pDC L2
ENSG00000162601 MYSM1 -631585 sc-eQTL 9.08e-01 -0.0114 0.0986 0.381 pDC L2
ENSG00000177606 JUN -715555 sc-eQTL 3.71e-01 0.0758 0.0846 0.381 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -478310 sc-eQTL 7.44e-01 0.0262 0.08 0.38 B_Memory LOneK1K
ENSG00000162601 MYSM1 -631585 sc-eQTL 6.00e-01 -0.0401 0.0763 0.38 B_Memory LOneK1K
ENSG00000177606 JUN -715555 sc-eQTL 9.28e-01 -0.00533 0.0591 0.38 B_Memory LOneK1K
ENSG00000237352 LINC01358 -865151 sc-eQTL 3.78e-01 0.0769 0.0871 0.38 B_Memory LOneK1K
ENSG00000162600 OMA1 -478310 sc-eQTL 9.10e-01 0.00778 0.0686 0.38 B_Naive LOneK1K
ENSG00000162601 MYSM1 -631585 sc-eQTL 7.75e-01 -0.0196 0.0686 0.38 B_Naive LOneK1K
ENSG00000177606 JUN -715555 sc-eQTL 5.33e-01 0.0359 0.0576 0.38 B_Naive LOneK1K
ENSG00000237352 LINC01358 -865151 sc-eQTL 8.96e-01 -0.0112 0.0855 0.38 B_Naive LOneK1K
ENSG00000162600 OMA1 -478310 sc-eQTL 8.05e-01 -0.0169 0.0685 0.38 CD14_Mono LOneK1K
ENSG00000162601 MYSM1 -631585 sc-eQTL 9.11e-01 0.00773 0.0691 0.38 CD14_Mono LOneK1K
ENSG00000177606 JUN -715555 sc-eQTL 2.57e-01 -0.0752 0.0661 0.38 CD14_Mono LOneK1K
ENSG00000162600 OMA1 -478310 sc-eQTL 7.82e-01 -0.0197 0.0712 0.381 CD16_Mono LOneK1K
ENSG00000162601 MYSM1 -631585 sc-eQTL 6.68e-02 0.164 0.0887 0.381 CD16_Mono LOneK1K
ENSG00000177606 JUN -715555 sc-eQTL 9.01e-01 0.00854 0.0687 0.381 CD16_Mono LOneK1K
ENSG00000162600 OMA1 -478310 sc-eQTL 6.68e-01 -0.0323 0.0752 0.381 NK_CD56dim LOneK1K
ENSG00000162601 MYSM1 -631585 sc-eQTL 8.13e-01 -0.0149 0.0628 0.381 NK_CD56dim LOneK1K
ENSG00000177606 JUN -715555 sc-eQTL 1.57e-01 0.0798 0.0562 0.381 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000177606 JUN -715835 pQTL 0.0349 -0.0405 0.0192 0.0 0.0 0.316
ENSG00000184292 TACSTD2 -509281 eQTL 0.252 0.0276 0.0241 0.00276 0.0 0.315

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162601 \N -631588 3.14e-07 1.42e-07 5.14e-08 2.07e-07 1.01e-07 8.37e-08 2.1e-07 5.43e-08 1.47e-07 6.08e-08 1.67e-07 1.05e-07 1.95e-07 7.95e-08 5.72e-08 7.23e-08 4.24e-08 1.56e-07 6.75e-08 4.8e-08 1.22e-07 1.25e-07 1.58e-07 3.17e-08 1.98e-07 1.22e-07 1.18e-07 1.01e-07 1.34e-07 1.07e-07 1.07e-07 2.93e-08 3.73e-08 8.89e-08 3.4e-08 3.53e-08 5.59e-08 8.63e-08 6.86e-08 4.47e-08 5.34e-08 1.59e-07 5.2e-08 1.18e-08 3.84e-08 1.87e-08 1.15e-07 3.79e-09 5.02e-08