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Genes within 1Mb (chr1:58067960:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -478842 sc-eQTL 9.98e-01 0.000176 0.06 0.372 B L1
ENSG00000162601 MYSM1 -632117 sc-eQTL 9.69e-01 -0.00247 0.0631 0.372 B L1
ENSG00000177606 JUN -716087 sc-eQTL 3.17e-01 0.0567 0.0565 0.372 B L1
ENSG00000237352 LINC01358 -865683 sc-eQTL 3.92e-01 0.0575 0.067 0.372 B L1
ENSG00000162600 OMA1 -478842 sc-eQTL 8.94e-01 -0.0063 0.0472 0.372 CD4T L1
ENSG00000162601 MYSM1 -632117 sc-eQTL 3.43e-01 0.0447 0.047 0.372 CD4T L1
ENSG00000177606 JUN -716087 sc-eQTL 2.67e-01 0.0596 0.0535 0.372 CD4T L1
ENSG00000162600 OMA1 -478842 sc-eQTL 3.32e-01 0.0627 0.0644 0.372 CD8T L1
ENSG00000162601 MYSM1 -632117 sc-eQTL 7.12e-01 -0.0219 0.0592 0.372 CD8T L1
ENSG00000177606 JUN -716087 sc-eQTL 1.90e-01 0.0658 0.05 0.372 CD8T L1
ENSG00000162600 OMA1 -478842 sc-eQTL 9.86e-01 -0.00138 0.078 0.372 DC L1
ENSG00000162601 MYSM1 -632117 sc-eQTL 1.24e-01 -0.139 0.0898 0.372 DC L1
ENSG00000177606 JUN -716087 sc-eQTL 4.27e-01 0.0619 0.0777 0.372 DC L1
ENSG00000162600 OMA1 -478842 sc-eQTL 9.05e-01 0.0072 0.0603 0.372 Mono L1
ENSG00000162601 MYSM1 -632117 sc-eQTL 8.10e-01 0.0172 0.0714 0.372 Mono L1
ENSG00000177606 JUN -716087 sc-eQTL 9.12e-02 -0.106 0.0626 0.372 Mono L1
ENSG00000162600 OMA1 -478842 sc-eQTL 9.71e-01 -0.0027 0.0745 0.373 NK L1
ENSG00000162601 MYSM1 -632117 sc-eQTL 9.52e-01 -0.00371 0.0617 0.373 NK L1
ENSG00000177606 JUN -716087 sc-eQTL 1.40e-01 0.0821 0.0554 0.373 NK L1
ENSG00000162600 OMA1 -478842 sc-eQTL 7.07e-01 0.0289 0.0767 0.372 Other_T L1
ENSG00000162601 MYSM1 -632117 sc-eQTL 2.75e-01 -0.0959 0.0877 0.372 Other_T L1
ENSG00000173406 DAB1 -478774 sc-eQTL 3.30e-01 0.076 0.0779 0.372 Other_T L1
ENSG00000177606 JUN -716087 sc-eQTL 7.46e-01 0.0165 0.0509 0.372 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -478842 sc-eQTL 3.15e-01 0.092 0.0913 0.378 B_Activated L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 4.99e-01 0.0676 0.0997 0.378 B_Activated L2
ENSG00000177606 JUN -716087 sc-eQTL 5.65e-01 0.0479 0.0832 0.378 B_Activated L2
ENSG00000237352 LINC01358 -865683 sc-eQTL 9.31e-01 0.00732 0.0848 0.378 B_Activated L2
ENSG00000162600 OMA1 -478842 sc-eQTL 1.28e-01 0.129 0.0846 0.373 B_Intermediate L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 5.58e-01 0.0493 0.0839 0.373 B_Intermediate L2
ENSG00000177606 JUN -716087 sc-eQTL 9.25e-01 -0.00564 0.0599 0.373 B_Intermediate L2
ENSG00000237352 LINC01358 -865683 sc-eQTL 4.22e-01 -0.0648 0.0805 0.373 B_Intermediate L2
ENSG00000162600 OMA1 -478842 sc-eQTL 4.66e-02 -0.164 0.0821 0.373 B_Memory L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 7.63e-02 -0.16 0.0897 0.373 B_Memory L2
ENSG00000177606 JUN -716087 sc-eQTL 4.66e-01 0.0492 0.0673 0.373 B_Memory L2
ENSG00000237352 LINC01358 -865683 sc-eQTL 7.32e-03 0.217 0.08 0.373 B_Memory L2
ENSG00000162600 OMA1 -478842 sc-eQTL 9.13e-01 -0.00836 0.0767 0.372 B_Naive1 L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 8.67e-01 -0.0112 0.0664 0.372 B_Naive1 L2
ENSG00000177606 JUN -716087 sc-eQTL 7.25e-01 0.0194 0.0551 0.372 B_Naive1 L2
ENSG00000237352 LINC01358 -865683 sc-eQTL 7.44e-01 0.0257 0.0787 0.372 B_Naive1 L2
ENSG00000162600 OMA1 -478842 sc-eQTL 8.60e-01 0.0153 0.0865 0.371 B_Naive2 L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 8.16e-01 0.0196 0.0841 0.371 B_Naive2 L2
ENSG00000177606 JUN -716087 sc-eQTL 2.75e-01 0.0702 0.0641 0.371 B_Naive2 L2
ENSG00000237352 LINC01358 -865683 sc-eQTL 9.96e-01 -0.00038 0.0762 0.371 B_Naive2 L2
ENSG00000162600 OMA1 -478842 sc-eQTL 2.56e-01 -0.109 0.0959 0.366 CD4_CTL L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 1.27e-01 -0.151 0.0987 0.366 CD4_CTL L2
ENSG00000177606 JUN -716087 sc-eQTL 2.05e-02 0.183 0.0782 0.366 CD4_CTL L2
ENSG00000162600 OMA1 -478842 sc-eQTL 8.35e-01 -0.0121 0.0579 0.372 CD4_Naive L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 3.12e-01 0.0554 0.0547 0.372 CD4_Naive L2
ENSG00000177606 JUN -716087 sc-eQTL 1.56e-01 0.0749 0.0525 0.372 CD4_Naive L2
ENSG00000162600 OMA1 -478842 sc-eQTL 6.33e-01 0.0295 0.0618 0.372 CD4_TCM L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 8.70e-01 -0.0105 0.0644 0.372 CD4_TCM L2
ENSG00000177606 JUN -716087 sc-eQTL 6.36e-01 0.0282 0.0596 0.372 CD4_TCM L2
ENSG00000162600 OMA1 -478842 sc-eQTL 2.97e-01 -0.0903 0.0865 0.372 CD4_TEM L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 9.40e-01 -0.00624 0.0826 0.372 CD4_TEM L2
ENSG00000177606 JUN -716087 sc-eQTL 5.82e-01 0.0379 0.0687 0.372 CD4_TEM L2
ENSG00000162600 OMA1 -478842 sc-eQTL 7.10e-01 0.0326 0.0875 0.372 CD8_CTL L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 1.09e-01 0.115 0.0712 0.372 CD8_CTL L2
ENSG00000177606 JUN -716087 sc-eQTL 2.96e-02 0.132 0.0602 0.372 CD8_CTL L2
ENSG00000162600 OMA1 -478842 sc-eQTL 7.42e-01 -0.0243 0.0738 0.372 CD8_Naive L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 1.59e-01 -0.105 0.0745 0.372 CD8_Naive L2
ENSG00000177606 JUN -716087 sc-eQTL 2.36e-01 0.076 0.0639 0.372 CD8_Naive L2
ENSG00000162600 OMA1 -478842 sc-eQTL 3.36e-01 0.0866 0.0898 0.368 CD8_TCM L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 8.84e-01 0.0143 0.0979 0.368 CD8_TCM L2
ENSG00000177606 JUN -716087 sc-eQTL 9.87e-01 -0.00113 0.0693 0.368 CD8_TCM L2
ENSG00000162600 OMA1 -478842 sc-eQTL 1.82e-02 0.224 0.0942 0.377 CD8_TEM L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 2.18e-01 -0.119 0.0961 0.377 CD8_TEM L2
ENSG00000177606 JUN -716087 sc-eQTL 2.01e-02 0.161 0.0685 0.377 CD8_TEM L2
ENSG00000162600 OMA1 -478842 sc-eQTL 7.21e-01 -0.0322 0.0902 0.372 MAIT L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 9.87e-01 0.00154 0.0958 0.372 MAIT L2
ENSG00000173406 DAB1 -478774 sc-eQTL 3.42e-01 0.0801 0.084 0.372 MAIT L2
ENSG00000177606 JUN -716087 sc-eQTL 9.85e-01 0.00124 0.0656 0.372 MAIT L2
ENSG00000162600 OMA1 -478842 sc-eQTL 2.30e-01 0.11 0.0914 0.371 NK_CD56bright L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 9.38e-01 -0.00689 0.0886 0.371 NK_CD56bright L2
ENSG00000177606 JUN -716087 sc-eQTL 4.02e-03 0.193 0.0664 0.371 NK_CD56bright L2
ENSG00000162600 OMA1 -478842 sc-eQTL 7.83e-01 -0.0222 0.0803 0.373 NK_CD56dim L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 9.34e-01 -0.00587 0.0712 0.373 NK_CD56dim L2
ENSG00000177606 JUN -716087 sc-eQTL 6.70e-02 0.114 0.0617 0.373 NK_CD56dim L2
ENSG00000162600 OMA1 -478842 sc-eQTL 5.15e-01 0.0592 0.0907 0.368 NK_HLA L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 3.82e-01 -0.0785 0.0896 0.368 NK_HLA L2
ENSG00000177606 JUN -716087 sc-eQTL 1.40e-01 0.12 0.0809 0.368 NK_HLA L2
ENSG00000162600 OMA1 -478842 sc-eQTL 9.80e-01 -0.00211 0.0846 0.373 NK_cytokine L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 8.54e-01 -0.0141 0.0767 0.373 NK_cytokine L2
ENSG00000177606 JUN -716087 sc-eQTL 6.48e-02 0.11 0.0594 0.373 NK_cytokine L2
ENSG00000162600 OMA1 -478842 sc-eQTL 3.67e-01 0.0968 0.107 0.381 PB L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 9.78e-01 0.00275 0.101 0.381 PB L2
ENSG00000177606 JUN -716087 sc-eQTL 5.95e-01 0.056 0.105 0.381 PB L2
ENSG00000237352 LINC01358 -865683 sc-eQTL 1.86e-01 0.114 0.0856 0.381 PB L2
ENSG00000162600 OMA1 -478842 sc-eQTL 8.19e-01 -0.019 0.0828 0.37 Pro_T L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 3.91e-01 0.0828 0.0964 0.37 Pro_T L2
ENSG00000173406 DAB1 -478774 sc-eQTL 3.83e-01 -0.057 0.0652 0.37 Pro_T L2
ENSG00000177606 JUN -716087 sc-eQTL 8.94e-01 0.00834 0.0624 0.37 Pro_T L2
ENSG00000162600 OMA1 -478842 sc-eQTL 3.08e-01 0.0841 0.0823 0.372 Treg L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 3.40e-02 0.185 0.0867 0.372 Treg L2
ENSG00000177606 JUN -716087 sc-eQTL 7.42e-01 0.0165 0.0499 0.372 Treg L2
ENSG00000162600 OMA1 -478842 sc-eQTL 4.91e-01 -0.0583 0.0845 0.363 cDC L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 1.54e-01 -0.135 0.0939 0.363 cDC L2
ENSG00000177606 JUN -716087 sc-eQTL 6.69e-01 0.0325 0.0757 0.363 cDC L2
ENSG00000162600 OMA1 -478842 sc-eQTL 8.96e-01 0.00926 0.0711 0.372 cMono_IL1B L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 4.98e-01 -0.0509 0.075 0.372 cMono_IL1B L2
ENSG00000177606 JUN -716087 sc-eQTL 2.23e-01 -0.0797 0.0653 0.372 cMono_IL1B L2
ENSG00000162600 OMA1 -478842 sc-eQTL 8.82e-01 -0.012 0.0805 0.372 cMono_S100A L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 2.27e-01 0.099 0.0816 0.372 cMono_S100A L2
ENSG00000177606 JUN -716087 sc-eQTL 3.64e-01 -0.068 0.0747 0.372 cMono_S100A L2
ENSG00000162600 OMA1 -478842 sc-eQTL 5.09e-01 -0.0646 0.0977 0.367 gdT L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 2.47e-01 -0.136 0.117 0.367 gdT L2
ENSG00000173406 DAB1 -478774 sc-eQTL 8.92e-01 0.0101 0.0741 0.367 gdT L2
ENSG00000177606 JUN -716087 sc-eQTL 9.15e-02 0.123 0.0726 0.367 gdT L2
ENSG00000162600 OMA1 -478842 sc-eQTL 6.10e-01 0.0446 0.0873 0.369 intMono L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 4.20e-01 -0.0774 0.0959 0.369 intMono L2
ENSG00000177606 JUN -716087 sc-eQTL 9.19e-01 0.00749 0.0738 0.369 intMono L2
ENSG00000162600 OMA1 -478842 sc-eQTL 4.26e-01 -0.0593 0.0743 0.36 ncMono L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 1.20e-03 0.306 0.0932 0.36 ncMono L2
ENSG00000177606 JUN -716087 sc-eQTL 6.19e-01 -0.0361 0.0725 0.36 ncMono L2
ENSG00000162600 OMA1 -478842 sc-eQTL 6.05e-01 0.0474 0.0915 0.373 pDC L2
ENSG00000162601 MYSM1 -632117 sc-eQTL 9.86e-01 -0.00173 0.0982 0.373 pDC L2
ENSG00000177606 JUN -716087 sc-eQTL 4.04e-01 0.0705 0.0842 0.373 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -478842 sc-eQTL 7.65e-01 0.0238 0.0793 0.372 B_Memory LOneK1K
ENSG00000162601 MYSM1 -632117 sc-eQTL 7.04e-01 -0.0289 0.0757 0.372 B_Memory LOneK1K
ENSG00000177606 JUN -716087 sc-eQTL 9.15e-01 -0.0063 0.0586 0.372 B_Memory LOneK1K
ENSG00000237352 LINC01358 -865683 sc-eQTL 3.37e-01 0.0831 0.0863 0.372 B_Memory LOneK1K
ENSG00000162600 OMA1 -478842 sc-eQTL 8.15e-01 0.016 0.0682 0.372 B_Naive LOneK1K
ENSG00000162601 MYSM1 -632117 sc-eQTL 9.63e-01 -0.00319 0.0681 0.372 B_Naive LOneK1K
ENSG00000177606 JUN -716087 sc-eQTL 4.52e-01 0.0431 0.0572 0.372 B_Naive LOneK1K
ENSG00000237352 LINC01358 -865683 sc-eQTL 8.33e-01 0.0179 0.085 0.372 B_Naive LOneK1K
ENSG00000162600 OMA1 -478842 sc-eQTL 9.38e-01 -0.00527 0.0679 0.372 CD14_Mono LOneK1K
ENSG00000162601 MYSM1 -632117 sc-eQTL 9.91e-01 -0.000769 0.0685 0.372 CD14_Mono LOneK1K
ENSG00000177606 JUN -716087 sc-eQTL 1.69e-01 -0.0903 0.0654 0.372 CD14_Mono LOneK1K
ENSG00000162600 OMA1 -478842 sc-eQTL 6.70e-01 -0.0302 0.0706 0.373 CD16_Mono LOneK1K
ENSG00000162601 MYSM1 -632117 sc-eQTL 8.77e-02 0.151 0.0881 0.373 CD16_Mono LOneK1K
ENSG00000177606 JUN -716087 sc-eQTL 9.65e-01 -0.003 0.0681 0.373 CD16_Mono LOneK1K
ENSG00000162600 OMA1 -478842 sc-eQTL 6.26e-01 -0.0364 0.0746 0.373 NK_CD56dim LOneK1K
ENSG00000162601 MYSM1 -632117 sc-eQTL 7.71e-01 -0.0181 0.0624 0.373 NK_CD56dim LOneK1K
ENSG00000177606 JUN -716087 sc-eQTL 1.66e-01 0.0775 0.0558 0.373 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000177606 JUN -716367 pQTL 0.0415 -0.0393 0.0193 0.0 0.0 0.31
ENSG00000184292 TACSTD2 -509813 eQTL 0.331 0.0236 0.0242 0.00171 0.0 0.308

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162601 \N -632120 3.53e-07 1.7e-07 6.86e-08 2.26e-07 1.05e-07 7.75e-08 2.5e-07 6.2e-08 1.89e-07 1.11e-07 1.83e-07 1.48e-07 2.38e-07 8.15e-08 6.12e-08 1.01e-07 5.57e-08 2.15e-07 7.42e-08 6.16e-08 1.24e-07 1.81e-07 1.75e-07 4.17e-08 2.28e-07 1.71e-07 1.31e-07 1.26e-07 1.34e-07 1.38e-07 1.22e-07 4.23e-08 4.37e-08 9.5e-08 4.04e-08 3.3e-08 4.54e-08 7.49e-08 6.45e-08 5.96e-08 5.1e-08 1.6e-07 3.25e-08 7.72e-09 3.48e-08 6.39e-09 7.13e-08 2.05e-09 4.83e-08