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Genes within 1Mb (chr1:58055668:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -491134 sc-eQTL 9.98e-01 0.000175 0.0604 0.545 B L1
ENSG00000162601 MYSM1 -644409 sc-eQTL 9.88e-01 0.000977 0.0635 0.545 B L1
ENSG00000177606 JUN -728379 sc-eQTL 2.61e-01 -0.0641 0.0569 0.545 B L1
ENSG00000237352 LINC01358 -877975 sc-eQTL 2.07e-01 0.0853 0.0673 0.545 B L1
ENSG00000162600 OMA1 -491134 sc-eQTL 6.89e-01 -0.019 0.0474 0.545 CD4T L1
ENSG00000162601 MYSM1 -644409 sc-eQTL 9.04e-01 -0.00573 0.0474 0.545 CD4T L1
ENSG00000177606 JUN -728379 sc-eQTL 9.09e-01 -0.00617 0.054 0.545 CD4T L1
ENSG00000162600 OMA1 -491134 sc-eQTL 7.73e-01 0.0187 0.0648 0.545 CD8T L1
ENSG00000162601 MYSM1 -644409 sc-eQTL 2.22e-02 0.135 0.0587 0.545 CD8T L1
ENSG00000177606 JUN -728379 sc-eQTL 7.71e-01 0.0147 0.0504 0.545 CD8T L1
ENSG00000162600 OMA1 -491134 sc-eQTL 1.43e-02 0.192 0.0777 0.552 DC L1
ENSG00000162601 MYSM1 -644409 sc-eQTL 3.81e-01 0.08 0.0912 0.552 DC L1
ENSG00000177606 JUN -728379 sc-eQTL 8.85e-01 0.0114 0.0787 0.552 DC L1
ENSG00000162600 OMA1 -491134 sc-eQTL 3.79e-02 -0.122 0.0584 0.545 Mono L1
ENSG00000162601 MYSM1 -644409 sc-eQTL 5.93e-01 -0.0374 0.0699 0.545 Mono L1
ENSG00000177606 JUN -728379 sc-eQTL 3.29e-01 0.0603 0.0616 0.545 Mono L1
ENSG00000162600 OMA1 -491134 sc-eQTL 9.78e-01 0.00206 0.0741 0.545 NK L1
ENSG00000162601 MYSM1 -644409 sc-eQTL 6.06e-01 0.0317 0.0613 0.545 NK L1
ENSG00000177606 JUN -728379 sc-eQTL 8.98e-02 -0.0938 0.055 0.545 NK L1
ENSG00000162600 OMA1 -491134 sc-eQTL 6.03e-01 -0.0396 0.076 0.545 Other_T L1
ENSG00000162601 MYSM1 -644409 sc-eQTL 2.77e-01 0.0947 0.0869 0.545 Other_T L1
ENSG00000173406 DAB1 -491066 sc-eQTL 9.82e-01 -0.00172 0.0775 0.545 Other_T L1
ENSG00000177606 JUN -728379 sc-eQTL 7.24e-01 -0.0178 0.0505 0.545 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -491134 sc-eQTL 7.66e-01 -0.0282 0.0948 0.546 B_Activated L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 8.47e-01 0.02 0.103 0.546 B_Activated L2
ENSG00000177606 JUN -728379 sc-eQTL 9.04e-01 -0.0104 0.0862 0.546 B_Activated L2
ENSG00000237352 LINC01358 -877975 sc-eQTL 7.13e-01 -0.0322 0.0877 0.546 B_Activated L2
ENSG00000162600 OMA1 -491134 sc-eQTL 1.63e-02 -0.204 0.0842 0.543 B_Intermediate L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 7.27e-01 0.0295 0.0842 0.543 B_Intermediate L2
ENSG00000177606 JUN -728379 sc-eQTL 6.82e-01 -0.0247 0.0601 0.543 B_Intermediate L2
ENSG00000237352 LINC01358 -877975 sc-eQTL 1.72e-01 0.111 0.0806 0.543 B_Intermediate L2
ENSG00000162600 OMA1 -491134 sc-eQTL 4.11e-01 0.0702 0.0853 0.543 B_Memory L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 2.30e-01 0.112 0.0928 0.543 B_Memory L2
ENSG00000177606 JUN -728379 sc-eQTL 9.96e-01 -0.000337 0.0695 0.543 B_Memory L2
ENSG00000237352 LINC01358 -877975 sc-eQTL 6.14e-01 0.0424 0.0839 0.543 B_Memory L2
ENSG00000162600 OMA1 -491134 sc-eQTL 4.54e-01 0.0585 0.078 0.545 B_Naive1 L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 2.71e-01 -0.0744 0.0674 0.545 B_Naive1 L2
ENSG00000177606 JUN -728379 sc-eQTL 9.46e-01 0.0038 0.0561 0.545 B_Naive1 L2
ENSG00000237352 LINC01358 -877975 sc-eQTL 6.66e-01 0.0346 0.0801 0.545 B_Naive1 L2
ENSG00000162600 OMA1 -491134 sc-eQTL 6.13e-01 -0.044 0.087 0.543 B_Naive2 L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 4.31e-01 -0.0667 0.0846 0.543 B_Naive2 L2
ENSG00000177606 JUN -728379 sc-eQTL 3.85e-01 -0.0562 0.0646 0.543 B_Naive2 L2
ENSG00000237352 LINC01358 -877975 sc-eQTL 7.46e-01 0.0249 0.0766 0.543 B_Naive2 L2
ENSG00000162600 OMA1 -491134 sc-eQTL 6.92e-01 0.0374 0.094 0.561 CD4_CTL L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 3.56e-03 0.28 0.095 0.561 CD4_CTL L2
ENSG00000177606 JUN -728379 sc-eQTL 8.85e-01 0.0112 0.0775 0.561 CD4_CTL L2
ENSG00000162600 OMA1 -491134 sc-eQTL 5.75e-01 -0.0322 0.0573 0.545 CD4_Naive L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 9.31e-01 -0.00473 0.0543 0.545 CD4_Naive L2
ENSG00000177606 JUN -728379 sc-eQTL 7.09e-01 -0.0195 0.0522 0.545 CD4_Naive L2
ENSG00000162600 OMA1 -491134 sc-eQTL 9.27e-01 0.00567 0.0617 0.545 CD4_TCM L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 6.44e-01 0.0298 0.0643 0.545 CD4_TCM L2
ENSG00000177606 JUN -728379 sc-eQTL 7.35e-01 -0.0202 0.0595 0.545 CD4_TCM L2
ENSG00000162600 OMA1 -491134 sc-eQTL 4.45e-01 0.0666 0.087 0.545 CD4_TEM L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 7.43e-01 -0.0272 0.083 0.545 CD4_TEM L2
ENSG00000177606 JUN -728379 sc-eQTL 8.98e-01 -0.00886 0.0691 0.545 CD4_TEM L2
ENSG00000162600 OMA1 -491134 sc-eQTL 7.39e-01 -0.0292 0.0877 0.545 CD8_CTL L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 1.65e-01 0.0996 0.0714 0.545 CD8_CTL L2
ENSG00000177606 JUN -728379 sc-eQTL 4.08e-01 -0.0505 0.0609 0.545 CD8_CTL L2
ENSG00000162600 OMA1 -491134 sc-eQTL 9.26e-01 0.00685 0.0739 0.545 CD8_Naive L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 3.53e-02 0.157 0.0742 0.545 CD8_Naive L2
ENSG00000177606 JUN -728379 sc-eQTL 8.78e-01 0.00985 0.0642 0.545 CD8_Naive L2
ENSG00000162600 OMA1 -491134 sc-eQTL 5.65e-01 0.0519 0.0901 0.558 CD8_TCM L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 4.00e-01 0.0826 0.098 0.558 CD8_TCM L2
ENSG00000177606 JUN -728379 sc-eQTL 9.13e-01 -0.00763 0.0695 0.558 CD8_TCM L2
ENSG00000162600 OMA1 -491134 sc-eQTL 2.80e-01 -0.105 0.0968 0.548 CD8_TEM L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 7.87e-01 0.0265 0.098 0.548 CD8_TEM L2
ENSG00000177606 JUN -728379 sc-eQTL 7.18e-01 -0.0255 0.0705 0.548 CD8_TEM L2
ENSG00000162600 OMA1 -491134 sc-eQTL 7.76e-01 0.026 0.0912 0.55 MAIT L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 5.78e-01 -0.0539 0.0969 0.55 MAIT L2
ENSG00000173406 DAB1 -491066 sc-eQTL 6.15e-01 0.0429 0.0851 0.55 MAIT L2
ENSG00000177606 JUN -728379 sc-eQTL 9.55e-01 0.00376 0.0664 0.55 MAIT L2
ENSG00000162600 OMA1 -491134 sc-eQTL 3.23e-02 -0.193 0.0896 0.551 NK_CD56bright L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 7.93e-01 0.023 0.0875 0.551 NK_CD56bright L2
ENSG00000177606 JUN -728379 sc-eQTL 5.17e-02 -0.13 0.0663 0.551 NK_CD56bright L2
ENSG00000162600 OMA1 -491134 sc-eQTL 4.10e-01 0.066 0.08 0.547 NK_CD56dim L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 9.50e-01 0.0045 0.071 0.547 NK_CD56dim L2
ENSG00000177606 JUN -728379 sc-eQTL 3.20e-01 -0.0617 0.0619 0.547 NK_CD56dim L2
ENSG00000162600 OMA1 -491134 sc-eQTL 7.56e-01 -0.0294 0.0945 0.548 NK_HLA L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 3.82e-01 -0.0817 0.0933 0.548 NK_HLA L2
ENSG00000177606 JUN -728379 sc-eQTL 1.06e-01 -0.136 0.0841 0.548 NK_HLA L2
ENSG00000162600 OMA1 -491134 sc-eQTL 7.08e-01 0.0316 0.0845 0.547 NK_cytokine L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 4.12e-01 0.0629 0.0765 0.547 NK_cytokine L2
ENSG00000177606 JUN -728379 sc-eQTL 2.32e-01 -0.0715 0.0596 0.547 NK_cytokine L2
ENSG00000162600 OMA1 -491134 sc-eQTL 4.59e-01 0.0846 0.114 0.533 PB L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 1.66e-01 0.148 0.106 0.533 PB L2
ENSG00000177606 JUN -728379 sc-eQTL 4.78e-01 -0.0794 0.112 0.533 PB L2
ENSG00000237352 LINC01358 -877975 sc-eQTL 6.38e-01 0.0433 0.0916 0.533 PB L2
ENSG00000162600 OMA1 -491134 sc-eQTL 7.00e-01 -0.0324 0.0838 0.546 Pro_T L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 9.00e-01 0.0123 0.0978 0.546 Pro_T L2
ENSG00000173406 DAB1 -491066 sc-eQTL 3.22e-01 0.0656 0.066 0.546 Pro_T L2
ENSG00000177606 JUN -728379 sc-eQTL 6.43e-01 0.0293 0.0632 0.546 Pro_T L2
ENSG00000162600 OMA1 -491134 sc-eQTL 1.22e-01 -0.126 0.0813 0.545 Treg L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 6.35e-01 -0.0412 0.0868 0.545 Treg L2
ENSG00000177606 JUN -728379 sc-eQTL 8.07e-01 -0.0121 0.0495 0.545 Treg L2
ENSG00000162600 OMA1 -491134 sc-eQTL 4.53e-01 0.0649 0.0862 0.556 cDC L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 3.28e-01 0.0941 0.096 0.556 cDC L2
ENSG00000177606 JUN -728379 sc-eQTL 4.42e-01 0.0594 0.0771 0.556 cDC L2
ENSG00000162600 OMA1 -491134 sc-eQTL 8.32e-03 -0.184 0.0691 0.545 cMono_IL1B L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 7.63e-01 0.0224 0.0741 0.545 cMono_IL1B L2
ENSG00000177606 JUN -728379 sc-eQTL 3.82e-01 0.0565 0.0646 0.545 cMono_IL1B L2
ENSG00000162600 OMA1 -491134 sc-eQTL 6.67e-01 -0.0345 0.08 0.545 cMono_S100A L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 2.60e-01 -0.0917 0.0812 0.545 cMono_S100A L2
ENSG00000177606 JUN -728379 sc-eQTL 8.85e-01 0.0108 0.0744 0.545 cMono_S100A L2
ENSG00000162600 OMA1 -491134 sc-eQTL 6.80e-01 0.0404 0.0977 0.579 gdT L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 3.46e-01 0.11 0.117 0.579 gdT L2
ENSG00000173406 DAB1 -491066 sc-eQTL 3.53e-01 -0.0688 0.0738 0.579 gdT L2
ENSG00000177606 JUN -728379 sc-eQTL 8.10e-01 -0.0176 0.0732 0.579 gdT L2
ENSG00000162600 OMA1 -491134 sc-eQTL 1.83e-01 -0.115 0.0861 0.549 intMono L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 7.36e-01 -0.0321 0.0951 0.549 intMono L2
ENSG00000177606 JUN -728379 sc-eQTL 9.96e-01 0.000347 0.0731 0.549 intMono L2
ENSG00000162600 OMA1 -491134 sc-eQTL 2.70e-01 0.0803 0.0726 0.557 ncMono L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 4.24e-01 -0.0748 0.0935 0.557 ncMono L2
ENSG00000177606 JUN -728379 sc-eQTL 5.21e-01 0.0455 0.0709 0.557 ncMono L2
ENSG00000162600 OMA1 -491134 sc-eQTL 1.61e-02 0.231 0.0949 0.565 pDC L2
ENSG00000162601 MYSM1 -644409 sc-eQTL 4.24e-01 0.0829 0.104 0.565 pDC L2
ENSG00000177606 JUN -728379 sc-eQTL 3.37e-01 0.0855 0.0889 0.565 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -491134 sc-eQTL 2.36e-01 -0.0947 0.0796 0.545 B_Memory LOneK1K
ENSG00000162601 MYSM1 -644409 sc-eQTL 1.66e-01 0.106 0.0759 0.545 B_Memory LOneK1K
ENSG00000177606 JUN -728379 sc-eQTL 8.74e-01 -0.00935 0.059 0.545 B_Memory LOneK1K
ENSG00000237352 LINC01358 -877975 sc-eQTL 2.25e-01 0.106 0.0868 0.545 B_Memory LOneK1K
ENSG00000162600 OMA1 -491134 sc-eQTL 8.28e-01 0.015 0.069 0.545 B_Naive LOneK1K
ENSG00000162601 MYSM1 -644409 sc-eQTL 2.32e-01 -0.0823 0.0687 0.545 B_Naive LOneK1K
ENSG00000177606 JUN -728379 sc-eQTL 3.97e-01 -0.0491 0.0578 0.545 B_Naive LOneK1K
ENSG00000237352 LINC01358 -877975 sc-eQTL 4.81e-01 0.0607 0.0859 0.545 B_Naive LOneK1K
ENSG00000162600 OMA1 -491134 sc-eQTL 2.75e-02 -0.147 0.0661 0.545 CD14_Mono LOneK1K
ENSG00000162601 MYSM1 -644409 sc-eQTL 4.31e-01 -0.0531 0.0673 0.545 CD14_Mono LOneK1K
ENSG00000177606 JUN -728379 sc-eQTL 7.43e-01 0.0212 0.0647 0.545 CD14_Mono LOneK1K
ENSG00000162600 OMA1 -491134 sc-eQTL 9.72e-01 0.00243 0.0696 0.547 CD16_Mono LOneK1K
ENSG00000162601 MYSM1 -644409 sc-eQTL 7.45e-01 -0.0285 0.0874 0.547 CD16_Mono LOneK1K
ENSG00000177606 JUN -728379 sc-eQTL 6.47e-01 0.0308 0.0671 0.547 CD16_Mono LOneK1K
ENSG00000162600 OMA1 -491134 sc-eQTL 4.09e-01 0.0615 0.0743 0.547 NK_CD56dim LOneK1K
ENSG00000162601 MYSM1 -644409 sc-eQTL 3.25e-01 0.0612 0.0621 0.547 NK_CD56dim LOneK1K
ENSG00000177606 JUN -728379 sc-eQTL 1.40e-01 -0.0824 0.0556 0.547 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000184292 TACSTD2 -522105 eQTL 0.109 -0.0384 0.0239 0.00484 0.0 0.41
ENSG00000237352 LINC01358 -877975 eQTL 0.0332 0.0819 0.0384 0.00129 0.0 0.41

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina