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Genes within 1Mb (chr1:57998713:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -548089 sc-eQTL 2.08e-01 -0.0807 0.0639 0.705 B L1
ENSG00000162601 MYSM1 -701364 sc-eQTL 8.97e-01 -0.00877 0.0674 0.705 B L1
ENSG00000177606 JUN -785334 sc-eQTL 3.08e-01 0.0617 0.0604 0.705 B L1
ENSG00000237352 LINC01358 -934930 sc-eQTL 5.95e-01 0.0382 0.0717 0.705 B L1
ENSG00000162600 OMA1 -548089 sc-eQTL 4.16e-01 -0.0406 0.0498 0.705 CD4T L1
ENSG00000162601 MYSM1 -701364 sc-eQTL 2.73e-01 0.0547 0.0497 0.705 CD4T L1
ENSG00000177606 JUN -785334 sc-eQTL 7.18e-01 0.0205 0.0568 0.705 CD4T L1
ENSG00000162600 OMA1 -548089 sc-eQTL 2.51e-01 0.0783 0.068 0.705 CD8T L1
ENSG00000162601 MYSM1 -701364 sc-eQTL 9.88e-01 -0.000919 0.0625 0.705 CD8T L1
ENSG00000177606 JUN -785334 sc-eQTL 1.43e-01 0.0776 0.0528 0.705 CD8T L1
ENSG00000162600 OMA1 -548089 sc-eQTL 4.04e-01 0.0693 0.0829 0.703 DC L1
ENSG00000162601 MYSM1 -701364 sc-eQTL 4.68e-01 -0.0698 0.0961 0.703 DC L1
ENSG00000177606 JUN -785334 sc-eQTL 9.87e-01 0.00134 0.0829 0.703 DC L1
ENSG00000162600 OMA1 -548089 sc-eQTL 7.55e-01 -0.0194 0.0621 0.705 Mono L1
ENSG00000162601 MYSM1 -701364 sc-eQTL 9.02e-01 0.00903 0.0735 0.705 Mono L1
ENSG00000177606 JUN -785334 sc-eQTL 3.91e-01 -0.0556 0.0648 0.705 Mono L1
ENSG00000162600 OMA1 -548089 sc-eQTL 5.38e-01 -0.0487 0.0789 0.706 NK L1
ENSG00000162601 MYSM1 -701364 sc-eQTL 3.49e-01 0.0612 0.0653 0.706 NK L1
ENSG00000177606 JUN -785334 sc-eQTL 6.18e-01 0.0295 0.059 0.706 NK L1
ENSG00000162600 OMA1 -548089 sc-eQTL 5.08e-01 -0.0529 0.0797 0.705 Other_T L1
ENSG00000162601 MYSM1 -701364 sc-eQTL 3.57e-01 -0.0843 0.0913 0.705 Other_T L1
ENSG00000173406 DAB1 -548021 sc-eQTL 6.64e-01 0.0353 0.0812 0.705 Other_T L1
ENSG00000177606 JUN -785334 sc-eQTL 2.51e-01 -0.0608 0.0528 0.705 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -548089 sc-eQTL 2.95e-01 -0.105 0.1 0.707 B_Activated L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 3.42e-01 0.104 0.109 0.707 B_Activated L2
ENSG00000177606 JUN -785334 sc-eQTL 6.23e-01 -0.0451 0.0914 0.707 B_Activated L2
ENSG00000237352 LINC01358 -934930 sc-eQTL 8.77e-01 -0.0144 0.093 0.707 B_Activated L2
ENSG00000162600 OMA1 -548089 sc-eQTL 1.21e-01 -0.138 0.089 0.704 B_Intermediate L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 5.45e-01 -0.0535 0.0882 0.704 B_Intermediate L2
ENSG00000177606 JUN -785334 sc-eQTL 7.85e-01 -0.0172 0.063 0.704 B_Intermediate L2
ENSG00000237352 LINC01358 -934930 sc-eQTL 4.01e-02 0.173 0.084 0.704 B_Intermediate L2
ENSG00000162600 OMA1 -548089 sc-eQTL 4.43e-01 -0.0667 0.0867 0.705 B_Memory L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 7.77e-01 0.0269 0.0947 0.705 B_Memory L2
ENSG00000177606 JUN -785334 sc-eQTL 3.10e-01 -0.0717 0.0705 0.705 B_Memory L2
ENSG00000237352 LINC01358 -934930 sc-eQTL 9.36e-01 0.00681 0.0853 0.705 B_Memory L2
ENSG00000162600 OMA1 -548089 sc-eQTL 9.19e-01 -0.00834 0.0816 0.705 B_Naive1 L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 5.35e-01 -0.0439 0.0706 0.705 B_Naive1 L2
ENSG00000177606 JUN -785334 sc-eQTL 8.94e-01 0.0078 0.0586 0.705 B_Naive1 L2
ENSG00000237352 LINC01358 -934930 sc-eQTL 3.17e-01 -0.0839 0.0835 0.705 B_Naive1 L2
ENSG00000162600 OMA1 -548089 sc-eQTL 2.49e-01 -0.105 0.0908 0.706 B_Naive2 L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 6.02e-01 -0.0462 0.0885 0.706 B_Naive2 L2
ENSG00000177606 JUN -785334 sc-eQTL 4.10e-01 0.0558 0.0676 0.706 B_Naive2 L2
ENSG00000237352 LINC01358 -934930 sc-eQTL 1.57e-01 0.113 0.0798 0.706 B_Naive2 L2
ENSG00000162600 OMA1 -548089 sc-eQTL 7.87e-02 -0.176 0.0993 0.714 CD4_CTL L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 2.88e-01 0.11 0.103 0.714 CD4_CTL L2
ENSG00000177606 JUN -785334 sc-eQTL 8.28e-01 -0.0179 0.0824 0.714 CD4_CTL L2
ENSG00000162600 OMA1 -548089 sc-eQTL 2.71e-01 -0.0677 0.0613 0.705 CD4_Naive L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 6.96e-01 0.0228 0.0583 0.705 CD4_Naive L2
ENSG00000177606 JUN -785334 sc-eQTL 4.02e-01 0.047 0.056 0.705 CD4_Naive L2
ENSG00000162600 OMA1 -548089 sc-eQTL 9.93e-01 0.000554 0.0653 0.705 CD4_TCM L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 5.89e-01 0.0368 0.068 0.705 CD4_TCM L2
ENSG00000177606 JUN -785334 sc-eQTL 5.64e-01 0.0364 0.063 0.705 CD4_TCM L2
ENSG00000162600 OMA1 -548089 sc-eQTL 5.14e-01 0.0595 0.0911 0.705 CD4_TEM L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 5.67e-01 0.0498 0.0868 0.705 CD4_TEM L2
ENSG00000177606 JUN -785334 sc-eQTL 4.25e-01 -0.0577 0.0722 0.705 CD4_TEM L2
ENSG00000162600 OMA1 -548089 sc-eQTL 7.14e-01 -0.0339 0.0926 0.705 CD8_CTL L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 9.06e-01 -0.00897 0.0758 0.705 CD8_CTL L2
ENSG00000177606 JUN -785334 sc-eQTL 3.42e-01 0.0612 0.0643 0.705 CD8_CTL L2
ENSG00000162600 OMA1 -548089 sc-eQTL 3.28e-01 0.0768 0.0783 0.705 CD8_Naive L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 5.68e-01 0.0455 0.0795 0.705 CD8_Naive L2
ENSG00000177606 JUN -785334 sc-eQTL 3.01e-01 0.0705 0.068 0.705 CD8_Naive L2
ENSG00000162600 OMA1 -548089 sc-eQTL 9.23e-01 0.00894 0.0927 0.708 CD8_TCM L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 1.56e-01 0.143 0.1 0.708 CD8_TCM L2
ENSG00000177606 JUN -785334 sc-eQTL 3.16e-01 0.0716 0.0713 0.708 CD8_TCM L2
ENSG00000162600 OMA1 -548089 sc-eQTL 3.05e-01 0.102 0.0989 0.699 CD8_TEM L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 5.88e-01 -0.0544 0.1 0.699 CD8_TEM L2
ENSG00000177606 JUN -785334 sc-eQTL 9.45e-01 0.00501 0.0721 0.699 CD8_TEM L2
ENSG00000162600 OMA1 -548089 sc-eQTL 8.35e-01 -0.0196 0.0941 0.71 MAIT L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 4.75e-01 -0.0714 0.0999 0.71 MAIT L2
ENSG00000173406 DAB1 -548021 sc-eQTL 7.90e-01 0.0235 0.0878 0.71 MAIT L2
ENSG00000177606 JUN -785334 sc-eQTL 4.94e-01 -0.0469 0.0684 0.71 MAIT L2
ENSG00000162600 OMA1 -548089 sc-eQTL 6.58e-01 -0.0435 0.0981 0.707 NK_CD56bright L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 5.43e-01 0.0576 0.0946 0.707 NK_CD56bright L2
ENSG00000177606 JUN -785334 sc-eQTL 9.47e-01 -0.00478 0.0724 0.707 NK_CD56bright L2
ENSG00000162600 OMA1 -548089 sc-eQTL 4.97e-01 -0.0582 0.0857 0.709 NK_CD56dim L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 7.54e-01 0.0238 0.076 0.709 NK_CD56dim L2
ENSG00000177606 JUN -785334 sc-eQTL 2.85e-01 0.071 0.0662 0.709 NK_CD56dim L2
ENSG00000162600 OMA1 -548089 sc-eQTL 7.54e-01 0.0319 0.101 0.71 NK_HLA L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 4.59e-01 0.0743 0.1 0.71 NK_HLA L2
ENSG00000177606 JUN -785334 sc-eQTL 6.02e-01 -0.0474 0.0907 0.71 NK_HLA L2
ENSG00000162600 OMA1 -548089 sc-eQTL 3.21e-01 -0.0898 0.0903 0.709 NK_cytokine L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 2.98e-01 0.0854 0.0819 0.709 NK_cytokine L2
ENSG00000177606 JUN -785334 sc-eQTL 1.33e-01 0.096 0.0637 0.709 NK_cytokine L2
ENSG00000162600 OMA1 -548089 sc-eQTL 8.68e-01 -0.0204 0.122 0.726 PB L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 9.23e-01 -0.0112 0.115 0.726 PB L2
ENSG00000177606 JUN -785334 sc-eQTL 1.53e-01 0.171 0.119 0.726 PB L2
ENSG00000237352 LINC01358 -934930 sc-eQTL 2.29e-02 0.222 0.0961 0.726 PB L2
ENSG00000162600 OMA1 -548089 sc-eQTL 3.49e-01 0.0793 0.0844 0.704 Pro_T L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 6.32e-01 0.0473 0.0985 0.704 Pro_T L2
ENSG00000173406 DAB1 -548021 sc-eQTL 2.94e-01 0.0701 0.0665 0.704 Pro_T L2
ENSG00000177606 JUN -785334 sc-eQTL 7.91e-01 -0.0169 0.0637 0.704 Pro_T L2
ENSG00000162600 OMA1 -548089 sc-eQTL 9.98e-01 -0.000211 0.0862 0.705 Treg L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 1.75e-01 0.124 0.091 0.705 Treg L2
ENSG00000177606 JUN -785334 sc-eQTL 1.66e-01 -0.0722 0.0519 0.705 Treg L2
ENSG00000162600 OMA1 -548089 sc-eQTL 3.64e-01 0.0837 0.0919 0.7 cDC L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 4.75e-01 -0.0734 0.103 0.7 cDC L2
ENSG00000177606 JUN -785334 sc-eQTL 4.29e-01 -0.0652 0.0823 0.7 cDC L2
ENSG00000162600 OMA1 -548089 sc-eQTL 3.50e-01 -0.0685 0.0732 0.705 cMono_IL1B L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 6.53e-01 -0.0349 0.0774 0.705 cMono_IL1B L2
ENSG00000177606 JUN -785334 sc-eQTL 2.54e-01 -0.077 0.0674 0.705 cMono_IL1B L2
ENSG00000162600 OMA1 -548089 sc-eQTL 6.87e-01 -0.0339 0.0838 0.705 cMono_S100A L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 2.05e-01 -0.108 0.085 0.705 cMono_S100A L2
ENSG00000177606 JUN -785334 sc-eQTL 2.07e-01 -0.0984 0.0777 0.705 cMono_S100A L2
ENSG00000162600 OMA1 -548089 sc-eQTL 8.31e-01 -0.0213 0.0998 0.718 gdT L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 8.22e-01 -0.0269 0.12 0.718 gdT L2
ENSG00000173406 DAB1 -548021 sc-eQTL 7.63e-01 0.0228 0.0756 0.718 gdT L2
ENSG00000177606 JUN -785334 sc-eQTL 7.52e-01 0.0237 0.0748 0.718 gdT L2
ENSG00000162600 OMA1 -548089 sc-eQTL 4.16e-03 -0.262 0.0902 0.704 intMono L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 2.55e-01 0.115 0.101 0.704 intMono L2
ENSG00000177606 JUN -785334 sc-eQTL 7.27e-01 -0.0272 0.0778 0.704 intMono L2
ENSG00000162600 OMA1 -548089 sc-eQTL 1.21e-01 0.118 0.076 0.701 ncMono L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 6.61e-02 0.18 0.0975 0.701 ncMono L2
ENSG00000177606 JUN -785334 sc-eQTL 4.17e-01 -0.0604 0.0744 0.701 ncMono L2
ENSG00000162600 OMA1 -548089 sc-eQTL 6.15e-01 -0.0488 0.097 0.709 pDC L2
ENSG00000162601 MYSM1 -701364 sc-eQTL 9.68e-01 -0.00423 0.104 0.709 pDC L2
ENSG00000177606 JUN -785334 sc-eQTL 1.63e-01 0.125 0.0889 0.709 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -548089 sc-eQTL 6.37e-02 -0.155 0.0832 0.705 B_Memory LOneK1K
ENSG00000162601 MYSM1 -701364 sc-eQTL 7.60e-01 -0.0245 0.08 0.705 B_Memory LOneK1K
ENSG00000177606 JUN -785334 sc-eQTL 2.94e-01 -0.065 0.0618 0.705 B_Memory LOneK1K
ENSG00000237352 LINC01358 -934930 sc-eQTL 2.56e-01 0.104 0.0912 0.705 B_Memory LOneK1K
ENSG00000162600 OMA1 -548089 sc-eQTL 8.69e-01 -0.0119 0.0722 0.705 B_Naive LOneK1K
ENSG00000162601 MYSM1 -701364 sc-eQTL 7.21e-01 -0.0258 0.0721 0.705 B_Naive LOneK1K
ENSG00000177606 JUN -785334 sc-eQTL 3.78e-01 0.0535 0.0605 0.705 B_Naive LOneK1K
ENSG00000237352 LINC01358 -934930 sc-eQTL 7.52e-01 -0.0285 0.09 0.705 B_Naive LOneK1K
ENSG00000162600 OMA1 -548089 sc-eQTL 6.77e-01 -0.0291 0.07 0.705 CD14_Mono LOneK1K
ENSG00000162601 MYSM1 -701364 sc-eQTL 3.02e-01 -0.0728 0.0704 0.705 CD14_Mono LOneK1K
ENSG00000177606 JUN -785334 sc-eQTL 1.27e-01 -0.103 0.0674 0.705 CD14_Mono LOneK1K
ENSG00000162600 OMA1 -548089 sc-eQTL 9.89e-01 -0.00103 0.0734 0.707 CD16_Mono LOneK1K
ENSG00000162601 MYSM1 -701364 sc-eQTL 1.26e-02 0.228 0.0908 0.707 CD16_Mono LOneK1K
ENSG00000177606 JUN -785334 sc-eQTL 8.64e-01 -0.0121 0.0708 0.707 CD16_Mono LOneK1K
ENSG00000162600 OMA1 -548089 sc-eQTL 2.27e-01 -0.0964 0.0796 0.709 NK_CD56dim LOneK1K
ENSG00000162601 MYSM1 -701364 sc-eQTL 7.41e-01 0.0221 0.0667 0.709 NK_CD56dim LOneK1K
ENSG00000177606 JUN -785334 sc-eQTL 4.67e-01 0.0436 0.0599 0.709 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000237352 LINC01358 -934930 eQTL 0.0447 -0.0774 0.0385 0.00108 0.0 0.279

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina