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Genes within 1Mb (chr1:57955539:T:TAAG):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -591263 sc-eQTL 7.71e-01 0.0266 0.0913 0.878 B L1
ENSG00000162601 MYSM1 -744538 sc-eQTL 8.76e-01 0.015 0.096 0.878 B L1
ENSG00000177606 JUN -828508 sc-eQTL 6.91e-01 -0.0344 0.0862 0.878 B L1
ENSG00000237352 LINC01358 -978104 sc-eQTL 6.85e-01 0.0414 0.102 0.878 B L1
ENSG00000162600 OMA1 -591263 sc-eQTL 5.07e-01 -0.0471 0.0709 0.878 CD4T L1
ENSG00000162601 MYSM1 -744538 sc-eQTL 4.25e-01 0.0565 0.0708 0.878 CD4T L1
ENSG00000177606 JUN -828508 sc-eQTL 2.74e-01 0.0884 0.0805 0.878 CD4T L1
ENSG00000162600 OMA1 -591263 sc-eQTL 4.21e-01 0.0781 0.0969 0.878 CD8T L1
ENSG00000162601 MYSM1 -744538 sc-eQTL 5.45e-01 -0.0539 0.0889 0.878 CD8T L1
ENSG00000177606 JUN -828508 sc-eQTL 1.61e-01 0.106 0.0752 0.878 CD8T L1
ENSG00000162600 OMA1 -591263 sc-eQTL 3.12e-01 0.124 0.123 0.878 DC L1
ENSG00000162601 MYSM1 -744538 sc-eQTL 4.53e-02 -0.284 0.141 0.878 DC L1
ENSG00000177606 JUN -828508 sc-eQTL 3.06e-01 -0.126 0.122 0.878 DC L1
ENSG00000162600 OMA1 -591263 sc-eQTL 4.35e-01 0.0708 0.0906 0.878 Mono L1
ENSG00000162601 MYSM1 -744538 sc-eQTL 1.17e-01 0.169 0.107 0.878 Mono L1
ENSG00000177606 JUN -828508 sc-eQTL 9.62e-01 0.00455 0.0949 0.878 Mono L1
ENSG00000162600 OMA1 -591263 sc-eQTL 4.03e-01 0.0949 0.113 0.878 NK L1
ENSG00000162601 MYSM1 -744538 sc-eQTL 1.48e-01 0.136 0.0935 0.878 NK L1
ENSG00000177606 JUN -828508 sc-eQTL 4.55e-01 0.0633 0.0846 0.878 NK L1
ENSG00000162600 OMA1 -591263 sc-eQTL 7.09e-01 -0.043 0.115 0.878 Other_T L1
ENSG00000162601 MYSM1 -744538 sc-eQTL 3.61e-01 -0.121 0.132 0.878 Other_T L1
ENSG00000173406 DAB1 -591195 sc-eQTL 9.41e-01 0.00863 0.117 0.878 Other_T L1
ENSG00000177606 JUN -828508 sc-eQTL 7.27e-01 -0.0267 0.0764 0.878 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -591263 sc-eQTL 2.77e-01 -0.157 0.144 0.878 B_Activated L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 8.16e-01 0.0368 0.158 0.878 B_Activated L2
ENSG00000177606 JUN -828508 sc-eQTL 7.95e-01 -0.0343 0.132 0.878 B_Activated L2
ENSG00000237352 LINC01358 -978104 sc-eQTL 8.68e-01 -0.0223 0.134 0.878 B_Activated L2
ENSG00000162600 OMA1 -591263 sc-eQTL 6.53e-01 -0.0576 0.128 0.878 B_Intermediate L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 7.11e-01 -0.0469 0.126 0.878 B_Intermediate L2
ENSG00000177606 JUN -828508 sc-eQTL 2.43e-01 -0.105 0.09 0.878 B_Intermediate L2
ENSG00000237352 LINC01358 -978104 sc-eQTL 2.42e-01 0.142 0.121 0.878 B_Intermediate L2
ENSG00000162600 OMA1 -591263 sc-eQTL 4.95e-01 -0.0856 0.125 0.877 B_Memory L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 3.67e-01 -0.123 0.136 0.877 B_Memory L2
ENSG00000177606 JUN -828508 sc-eQTL 2.19e-01 -0.125 0.102 0.877 B_Memory L2
ENSG00000237352 LINC01358 -978104 sc-eQTL 3.11e-01 -0.125 0.123 0.877 B_Memory L2
ENSG00000162600 OMA1 -591263 sc-eQTL 8.87e-01 0.017 0.119 0.878 B_Naive1 L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 5.05e-01 0.0688 0.103 0.878 B_Naive1 L2
ENSG00000177606 JUN -828508 sc-eQTL 4.97e-01 -0.0582 0.0855 0.878 B_Naive1 L2
ENSG00000237352 LINC01358 -978104 sc-eQTL 4.44e-01 -0.0936 0.122 0.878 B_Naive1 L2
ENSG00000162600 OMA1 -591263 sc-eQTL 4.06e-01 -0.111 0.134 0.878 B_Naive2 L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 8.06e-01 -0.0321 0.13 0.878 B_Naive2 L2
ENSG00000177606 JUN -828508 sc-eQTL 9.83e-01 0.00211 0.0996 0.878 B_Naive2 L2
ENSG00000237352 LINC01358 -978104 sc-eQTL 1.86e-02 0.276 0.116 0.878 B_Naive2 L2
ENSG00000162600 OMA1 -591263 sc-eQTL 3.40e-01 -0.141 0.147 0.886 CD4_CTL L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 7.32e-01 -0.0523 0.152 0.886 CD4_CTL L2
ENSG00000177606 JUN -828508 sc-eQTL 1.93e-01 0.158 0.121 0.886 CD4_CTL L2
ENSG00000162600 OMA1 -591263 sc-eQTL 3.77e-01 -0.0765 0.0864 0.878 CD4_Naive L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 3.96e-01 0.0697 0.0819 0.878 CD4_Naive L2
ENSG00000177606 JUN -828508 sc-eQTL 3.43e-01 0.0749 0.0788 0.878 CD4_Naive L2
ENSG00000162600 OMA1 -591263 sc-eQTL 9.93e-01 -0.000835 0.0937 0.878 CD4_TCM L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 7.03e-01 -0.0373 0.0975 0.878 CD4_TCM L2
ENSG00000177606 JUN -828508 sc-eQTL 2.15e-01 0.112 0.09 0.878 CD4_TCM L2
ENSG00000162600 OMA1 -591263 sc-eQTL 9.45e-01 0.00916 0.132 0.878 CD4_TEM L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 6.10e-01 -0.0642 0.126 0.878 CD4_TEM L2
ENSG00000177606 JUN -828508 sc-eQTL 8.71e-01 0.017 0.105 0.878 CD4_TEM L2
ENSG00000162600 OMA1 -591263 sc-eQTL 8.98e-01 0.0169 0.133 0.878 CD8_CTL L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 2.79e-01 -0.117 0.108 0.878 CD8_CTL L2
ENSG00000177606 JUN -828508 sc-eQTL 3.31e-01 0.0895 0.0919 0.878 CD8_CTL L2
ENSG00000162600 OMA1 -591263 sc-eQTL 8.32e-01 -0.0239 0.112 0.878 CD8_Naive L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 9.95e-01 0.000677 0.114 0.878 CD8_Naive L2
ENSG00000177606 JUN -828508 sc-eQTL 3.06e-01 0.1 0.0975 0.878 CD8_Naive L2
ENSG00000162600 OMA1 -591263 sc-eQTL 4.82e-02 0.268 0.135 0.877 CD8_TCM L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 7.62e-01 0.045 0.148 0.877 CD8_TCM L2
ENSG00000177606 JUN -828508 sc-eQTL 9.69e-02 0.174 0.104 0.877 CD8_TCM L2
ENSG00000162600 OMA1 -591263 sc-eQTL 2.37e-01 -0.163 0.138 0.874 CD8_TEM L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 3.59e-01 0.128 0.139 0.874 CD8_TEM L2
ENSG00000177606 JUN -828508 sc-eQTL 5.47e-01 0.0605 0.1 0.874 CD8_TEM L2
ENSG00000162600 OMA1 -591263 sc-eQTL 7.85e-01 -0.0378 0.139 0.881 MAIT L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 8.97e-01 -0.0192 0.147 0.881 MAIT L2
ENSG00000173406 DAB1 -591195 sc-eQTL 8.64e-01 0.0223 0.13 0.881 MAIT L2
ENSG00000177606 JUN -828508 sc-eQTL 9.16e-01 -0.0106 0.101 0.881 MAIT L2
ENSG00000162600 OMA1 -591263 sc-eQTL 5.98e-01 -0.0746 0.141 0.882 NK_CD56bright L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 7.87e-01 0.037 0.137 0.882 NK_CD56bright L2
ENSG00000177606 JUN -828508 sc-eQTL 1.54e-01 0.149 0.104 0.882 NK_CD56bright L2
ENSG00000162600 OMA1 -591263 sc-eQTL 5.90e-01 0.0669 0.124 0.881 NK_CD56dim L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 4.67e-01 0.08 0.11 0.881 NK_CD56dim L2
ENSG00000177606 JUN -828508 sc-eQTL 1.53e-01 0.137 0.0956 0.881 NK_CD56dim L2
ENSG00000162600 OMA1 -591263 sc-eQTL 4.80e-01 0.099 0.14 0.884 NK_HLA L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 3.73e-01 0.123 0.138 0.884 NK_HLA L2
ENSG00000177606 JUN -828508 sc-eQTL 9.54e-01 0.00722 0.126 0.884 NK_HLA L2
ENSG00000162600 OMA1 -591263 sc-eQTL 8.11e-01 0.0312 0.13 0.881 NK_cytokine L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 5.42e-01 0.0721 0.118 0.881 NK_cytokine L2
ENSG00000177606 JUN -828508 sc-eQTL 2.93e-01 0.097 0.0919 0.881 NK_cytokine L2
ENSG00000162600 OMA1 -591263 sc-eQTL 3.47e-01 0.165 0.175 0.896 PB L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 2.71e-01 0.182 0.165 0.896 PB L2
ENSG00000177606 JUN -828508 sc-eQTL 8.33e-01 0.0363 0.172 0.896 PB L2
ENSG00000237352 LINC01358 -978104 sc-eQTL 8.93e-02 0.239 0.139 0.896 PB L2
ENSG00000162600 OMA1 -591263 sc-eQTL 3.00e-01 0.127 0.122 0.878 Pro_T L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 4.61e-01 -0.105 0.142 0.878 Pro_T L2
ENSG00000173406 DAB1 -591195 sc-eQTL 4.65e-01 0.0705 0.0963 0.878 Pro_T L2
ENSG00000177606 JUN -828508 sc-eQTL 6.42e-01 -0.0429 0.0921 0.878 Pro_T L2
ENSG00000162600 OMA1 -591263 sc-eQTL 9.64e-01 -0.00553 0.124 0.878 Treg L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 3.33e-01 0.127 0.131 0.878 Treg L2
ENSG00000177606 JUN -828508 sc-eQTL 6.67e-01 -0.0322 0.0747 0.878 Treg L2
ENSG00000162600 OMA1 -591263 sc-eQTL 7.09e-01 -0.0505 0.135 0.88 cDC L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 4.45e-02 -0.301 0.149 0.88 cDC L2
ENSG00000177606 JUN -828508 sc-eQTL 1.45e-01 -0.176 0.12 0.88 cDC L2
ENSG00000162600 OMA1 -591263 sc-eQTL 8.88e-01 -0.015 0.106 0.878 cMono_IL1B L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 7.93e-01 0.0294 0.112 0.878 cMono_IL1B L2
ENSG00000177606 JUN -828508 sc-eQTL 2.29e-01 -0.118 0.0976 0.878 cMono_IL1B L2
ENSG00000162600 OMA1 -591263 sc-eQTL 8.63e-01 0.0209 0.121 0.878 cMono_S100A L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 2.25e-01 0.149 0.122 0.878 cMono_S100A L2
ENSG00000177606 JUN -828508 sc-eQTL 6.42e-01 -0.0522 0.112 0.878 cMono_S100A L2
ENSG00000162600 OMA1 -591263 sc-eQTL 8.26e-01 0.033 0.15 0.873 gdT L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 6.61e-01 -0.0789 0.179 0.873 gdT L2
ENSG00000173406 DAB1 -591195 sc-eQTL 4.80e-01 -0.0803 0.113 0.873 gdT L2
ENSG00000177606 JUN -828508 sc-eQTL 3.80e-01 0.0986 0.112 0.873 gdT L2
ENSG00000162600 OMA1 -591263 sc-eQTL 8.61e-02 -0.224 0.13 0.876 intMono L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 4.70e-01 0.104 0.144 0.876 intMono L2
ENSG00000177606 JUN -828508 sc-eQTL 7.85e-01 -0.0302 0.111 0.876 intMono L2
ENSG00000162600 OMA1 -591263 sc-eQTL 1.71e-01 0.155 0.113 0.876 ncMono L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 1.39e-01 0.215 0.145 0.876 ncMono L2
ENSG00000177606 JUN -828508 sc-eQTL 9.23e-01 0.0106 0.11 0.876 ncMono L2
ENSG00000162600 OMA1 -591263 sc-eQTL 7.45e-01 0.0496 0.152 0.893 pDC L2
ENSG00000162601 MYSM1 -744538 sc-eQTL 7.24e-01 0.0578 0.164 0.893 pDC L2
ENSG00000177606 JUN -828508 sc-eQTL 6.80e-01 -0.0581 0.141 0.893 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -591263 sc-eQTL 2.22e-01 -0.146 0.119 0.878 B_Memory LOneK1K
ENSG00000162601 MYSM1 -744538 sc-eQTL 4.83e-01 -0.0799 0.114 0.878 B_Memory LOneK1K
ENSG00000177606 JUN -828508 sc-eQTL 7.79e-02 -0.155 0.0875 0.878 B_Memory LOneK1K
ENSG00000237352 LINC01358 -978104 sc-eQTL 6.36e-01 -0.0617 0.13 0.878 B_Memory LOneK1K
ENSG00000162600 OMA1 -591263 sc-eQTL 5.14e-01 0.0694 0.106 0.878 B_Naive LOneK1K
ENSG00000162601 MYSM1 -744538 sc-eQTL 4.36e-01 0.0827 0.106 0.878 B_Naive LOneK1K
ENSG00000177606 JUN -828508 sc-eQTL 9.60e-01 -0.0045 0.0891 0.878 B_Naive LOneK1K
ENSG00000237352 LINC01358 -978104 sc-eQTL 2.87e-01 0.141 0.132 0.878 B_Naive LOneK1K
ENSG00000162600 OMA1 -591263 sc-eQTL 7.64e-01 0.0305 0.101 0.878 CD14_Mono LOneK1K
ENSG00000162601 MYSM1 -744538 sc-eQTL 2.66e-01 0.113 0.102 0.878 CD14_Mono LOneK1K
ENSG00000177606 JUN -828508 sc-eQTL 2.96e-01 -0.102 0.0977 0.878 CD14_Mono LOneK1K
ENSG00000162600 OMA1 -591263 sc-eQTL 9.91e-01 0.00123 0.106 0.879 CD16_Mono LOneK1K
ENSG00000162601 MYSM1 -744538 sc-eQTL 6.70e-02 0.243 0.132 0.879 CD16_Mono LOneK1K
ENSG00000177606 JUN -828508 sc-eQTL 5.69e-01 0.0583 0.102 0.879 CD16_Mono LOneK1K
ENSG00000162600 OMA1 -591263 sc-eQTL 3.71e-01 0.103 0.115 0.881 NK_CD56dim LOneK1K
ENSG00000162601 MYSM1 -744538 sc-eQTL 4.18e-01 0.078 0.0961 0.881 NK_CD56dim LOneK1K
ENSG00000177606 JUN -828508 sc-eQTL 2.70e-01 0.0954 0.0862 0.881 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000021852 C8B 989399 pQTL 0.00456 0.113 0.0398 0.00186 0.0 0.123

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162601 \N -744541 1.21e-06 4.78e-07 3.08e-07 6.38e-07 1.08e-07 4.51e-07 7.53e-07 5.89e-08 5.3e-07 3.1e-07 1.09e-06 3.84e-07 1.33e-06 1.07e-07 7.98e-08 1.76e-07 1.35e-07 4.39e-07 7.52e-07 7.49e-08 1.91e-07 4.99e-07 3.84e-07 1.29e-07 1.53e-06 2.55e-07 2.62e-07 1.85e-07 3.99e-07 1.04e-06 3.93e-07 4.07e-08 4.74e-08 5.53e-07 4.2e-07 5.7e-08 1.03e-07 1.07e-07 8.24e-08 8.2e-08 5.13e-08 7.52e-07 3.09e-08 1.99e-07 2.64e-08 9.85e-08 7.61e-08 1.88e-09 4.81e-08