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Genes within 1Mb (chr1:57873971:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -672831 sc-eQTL 6.19e-01 -0.0293 0.0589 0.528 B L1
ENSG00000162601 MYSM1 -826106 sc-eQTL 5.20e-01 -0.0398 0.0619 0.528 B L1
ENSG00000177606 JUN -910076 sc-eQTL 4.44e-01 0.0426 0.0555 0.528 B L1
ENSG00000162600 OMA1 -672831 sc-eQTL 1.14e-01 0.0736 0.0464 0.528 CD4T L1
ENSG00000162601 MYSM1 -826106 sc-eQTL 3.90e-01 0.04 0.0465 0.528 CD4T L1
ENSG00000177606 JUN -910076 sc-eQTL 9.06e-01 -0.00627 0.0531 0.528 CD4T L1
ENSG00000162600 OMA1 -672831 sc-eQTL 6.44e-01 0.0292 0.0633 0.528 CD8T L1
ENSG00000162601 MYSM1 -826106 sc-eQTL 6.95e-01 0.0228 0.058 0.528 CD8T L1
ENSG00000177606 JUN -910076 sc-eQTL 7.24e-01 0.0174 0.0492 0.528 CD8T L1
ENSG00000162600 OMA1 -672831 sc-eQTL 9.92e-01 0.000798 0.08 0.525 DC L1
ENSG00000162601 MYSM1 -826106 sc-eQTL 7.54e-01 -0.0291 0.0926 0.525 DC L1
ENSG00000177606 JUN -910076 sc-eQTL 8.14e-01 -0.0188 0.0798 0.525 DC L1
ENSG00000162600 OMA1 -672831 sc-eQTL 3.96e-01 0.0497 0.0585 0.528 Mono L1
ENSG00000162601 MYSM1 -826106 sc-eQTL 1.10e-01 0.111 0.069 0.528 Mono L1
ENSG00000177606 JUN -910076 sc-eQTL 9.10e-01 0.00695 0.0613 0.528 Mono L1
ENSG00000162600 OMA1 -672831 sc-eQTL 6.01e-02 0.136 0.0719 0.528 NK L1
ENSG00000162601 MYSM1 -826106 sc-eQTL 8.37e-01 0.0124 0.0601 0.528 NK L1
ENSG00000177606 JUN -910076 sc-eQTL 7.75e-01 -0.0156 0.0542 0.528 NK L1
ENSG00000162600 OMA1 -672831 sc-eQTL 4.51e-01 -0.0566 0.0749 0.528 Other_T L1
ENSG00000162601 MYSM1 -826106 sc-eQTL 4.57e-01 -0.064 0.0859 0.528 Other_T L1
ENSG00000173406 DAB1 -672763 sc-eQTL 2.70e-01 -0.0843 0.0762 0.528 Other_T L1
ENSG00000177606 JUN -910076 sc-eQTL 4.18e-01 0.0404 0.0498 0.528 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -672831 sc-eQTL 4.43e-01 -0.0715 0.093 0.536 B_Activated L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 5.10e-01 -0.0669 0.101 0.536 B_Activated L2
ENSG00000177606 JUN -910076 sc-eQTL 7.11e-01 0.0314 0.0847 0.536 B_Activated L2
ENSG00000162600 OMA1 -672831 sc-eQTL 8.26e-01 -0.0185 0.0836 0.528 B_Intermediate L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 3.90e-01 -0.0709 0.0824 0.528 B_Intermediate L2
ENSG00000177606 JUN -910076 sc-eQTL 4.29e-01 0.0466 0.0588 0.528 B_Intermediate L2
ENSG00000162600 OMA1 -672831 sc-eQTL 5.79e-01 0.046 0.0828 0.524 B_Memory L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 9.29e-01 0.00809 0.0904 0.524 B_Memory L2
ENSG00000177606 JUN -910076 sc-eQTL 2.32e-02 0.152 0.0666 0.524 B_Memory L2
ENSG00000162600 OMA1 -672831 sc-eQTL 3.73e-01 0.0674 0.0755 0.528 B_Naive1 L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 3.14e-01 -0.066 0.0654 0.528 B_Naive1 L2
ENSG00000177606 JUN -910076 sc-eQTL 7.75e-01 0.0156 0.0543 0.528 B_Naive1 L2
ENSG00000162600 OMA1 -672831 sc-eQTL 1.30e-02 -0.206 0.0822 0.526 B_Naive2 L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 2.74e-01 -0.0887 0.0809 0.526 B_Naive2 L2
ENSG00000177606 JUN -910076 sc-eQTL 5.73e-01 -0.035 0.062 0.526 B_Naive2 L2
ENSG00000162600 OMA1 -672831 sc-eQTL 1.53e-01 0.133 0.0925 0.527 CD4_CTL L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 1.80e-01 -0.128 0.0955 0.527 CD4_CTL L2
ENSG00000177606 JUN -910076 sc-eQTL 1.01e-01 0.125 0.076 0.527 CD4_CTL L2
ENSG00000162600 OMA1 -672831 sc-eQTL 4.40e-01 0.0442 0.057 0.528 CD4_Naive L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 3.93e-01 0.0462 0.054 0.528 CD4_Naive L2
ENSG00000177606 JUN -910076 sc-eQTL 6.28e-01 -0.0252 0.0521 0.528 CD4_Naive L2
ENSG00000162600 OMA1 -672831 sc-eQTL 5.84e-02 0.116 0.061 0.528 CD4_TCM L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 8.62e-01 0.0111 0.0641 0.528 CD4_TCM L2
ENSG00000177606 JUN -910076 sc-eQTL 6.92e-01 0.0235 0.0593 0.528 CD4_TCM L2
ENSG00000162600 OMA1 -672831 sc-eQTL 2.71e-01 -0.0962 0.0871 0.528 CD4_TEM L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 6.91e-01 -0.0331 0.0832 0.528 CD4_TEM L2
ENSG00000177606 JUN -910076 sc-eQTL 5.98e-01 -0.0366 0.0693 0.528 CD4_TEM L2
ENSG00000162600 OMA1 -672831 sc-eQTL 6.83e-01 -0.0351 0.0859 0.528 CD8_CTL L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 4.28e-01 -0.0558 0.0702 0.528 CD8_CTL L2
ENSG00000177606 JUN -910076 sc-eQTL 3.28e-02 0.127 0.0591 0.528 CD8_CTL L2
ENSG00000162600 OMA1 -672831 sc-eQTL 8.88e-01 -0.0103 0.0729 0.528 CD8_Naive L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 5.36e-01 -0.0457 0.0738 0.528 CD8_Naive L2
ENSG00000177606 JUN -910076 sc-eQTL 8.24e-01 0.0141 0.0633 0.528 CD8_Naive L2
ENSG00000162600 OMA1 -672831 sc-eQTL 4.47e-01 -0.0678 0.0889 0.512 CD8_TCM L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 3.66e-01 0.0877 0.0967 0.512 CD8_TCM L2
ENSG00000177606 JUN -910076 sc-eQTL 8.39e-02 0.118 0.0681 0.512 CD8_TCM L2
ENSG00000162600 OMA1 -672831 sc-eQTL 7.43e-01 -0.0306 0.0933 0.527 CD8_TEM L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 1.94e-01 0.122 0.0938 0.527 CD8_TEM L2
ENSG00000177606 JUN -910076 sc-eQTL 9.73e-02 0.112 0.0673 0.527 CD8_TEM L2
ENSG00000162600 OMA1 -672831 sc-eQTL 2.90e-01 -0.0936 0.0883 0.53 MAIT L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 9.16e-01 0.00991 0.0941 0.53 MAIT L2
ENSG00000173406 DAB1 -672763 sc-eQTL 6.49e-01 0.0377 0.0826 0.53 MAIT L2
ENSG00000177606 JUN -910076 sc-eQTL 2.01e-01 0.0823 0.0642 0.53 MAIT L2
ENSG00000162600 OMA1 -672831 sc-eQTL 3.37e-01 0.0885 0.092 0.522 NK_CD56bright L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 5.27e-01 -0.0564 0.0889 0.522 NK_CD56bright L2
ENSG00000177606 JUN -910076 sc-eQTL 9.40e-01 -0.00513 0.0681 0.522 NK_CD56bright L2
ENSG00000162600 OMA1 -672831 sc-eQTL 2.92e-01 0.0827 0.0782 0.528 NK_CD56dim L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 6.91e-01 0.0277 0.0694 0.528 NK_CD56dim L2
ENSG00000177606 JUN -910076 sc-eQTL 6.95e-01 0.0238 0.0607 0.528 NK_CD56dim L2
ENSG00000162600 OMA1 -672831 sc-eQTL 4.19e-01 0.071 0.0876 0.521 NK_HLA L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 5.40e-01 0.0532 0.0867 0.521 NK_HLA L2
ENSG00000177606 JUN -910076 sc-eQTL 7.54e-01 0.0246 0.0786 0.521 NK_HLA L2
ENSG00000162600 OMA1 -672831 sc-eQTL 3.65e-02 0.172 0.0815 0.528 NK_cytokine L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 6.48e-01 -0.0341 0.0747 0.528 NK_cytokine L2
ENSG00000177606 JUN -910076 sc-eQTL 8.27e-01 -0.0127 0.0583 0.528 NK_cytokine L2
ENSG00000162600 OMA1 -672831 sc-eQTL 6.01e-01 0.053 0.101 0.596 PB L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 3.88e-01 0.0822 0.0949 0.596 PB L2
ENSG00000177606 JUN -910076 sc-eQTL 8.05e-01 -0.0245 0.0991 0.596 PB L2
ENSG00000162600 OMA1 -672831 sc-eQTL 9.76e-01 0.00255 0.0846 0.526 Pro_T L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 1.22e-01 -0.152 0.0981 0.526 Pro_T L2
ENSG00000173406 DAB1 -672763 sc-eQTL 8.60e-01 -0.0118 0.0667 0.526 Pro_T L2
ENSG00000177606 JUN -910076 sc-eQTL 3.47e-01 0.0599 0.0636 0.526 Pro_T L2
ENSG00000162600 OMA1 -672831 sc-eQTL 3.82e-01 0.071 0.0811 0.528 Treg L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 1.96e-01 0.111 0.0859 0.528 Treg L2
ENSG00000177606 JUN -910076 sc-eQTL 4.93e-01 0.0337 0.0491 0.528 Treg L2
ENSG00000162600 OMA1 -672831 sc-eQTL 5.21e-01 -0.056 0.0871 0.539 cDC L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 4.11e-01 -0.08 0.097 0.539 cDC L2
ENSG00000177606 JUN -910076 sc-eQTL 6.49e-01 0.0356 0.0779 0.539 cDC L2
ENSG00000162600 OMA1 -672831 sc-eQTL 2.71e-01 0.0765 0.0693 0.528 cMono_IL1B L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 8.01e-01 -0.0186 0.0734 0.528 cMono_IL1B L2
ENSG00000177606 JUN -910076 sc-eQTL 9.51e-01 -0.00396 0.0641 0.528 cMono_IL1B L2
ENSG00000162600 OMA1 -672831 sc-eQTL 8.21e-01 0.0181 0.0795 0.528 cMono_S100A L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 1.38e-02 0.198 0.0798 0.528 cMono_S100A L2
ENSG00000177606 JUN -910076 sc-eQTL 8.33e-01 -0.0156 0.0739 0.528 cMono_S100A L2
ENSG00000162600 OMA1 -672831 sc-eQTL 3.47e-01 -0.0898 0.0952 0.491 gdT L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 3.31e-01 -0.111 0.114 0.491 gdT L2
ENSG00000173406 DAB1 -672763 sc-eQTL 9.31e-01 -0.00623 0.0723 0.491 gdT L2
ENSG00000177606 JUN -910076 sc-eQTL 4.66e-01 0.0522 0.0714 0.491 gdT L2
ENSG00000162600 OMA1 -672831 sc-eQTL 7.56e-01 0.0273 0.0879 0.536 intMono L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 5.75e-01 -0.0542 0.0966 0.536 intMono L2
ENSG00000177606 JUN -910076 sc-eQTL 2.09e-01 0.0931 0.0739 0.536 intMono L2
ENSG00000162600 OMA1 -672831 sc-eQTL 4.31e-01 0.0578 0.0732 0.527 ncMono L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 2.31e-01 0.113 0.094 0.527 ncMono L2
ENSG00000177606 JUN -910076 sc-eQTL 9.46e-01 0.00487 0.0715 0.527 ncMono L2
ENSG00000162600 OMA1 -672831 sc-eQTL 2.33e-01 0.116 0.097 0.52 pDC L2
ENSG00000162601 MYSM1 -826106 sc-eQTL 3.64e-02 -0.217 0.103 0.52 pDC L2
ENSG00000177606 JUN -910076 sc-eQTL 2.77e-01 -0.0976 0.0894 0.52 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162600 OMA1 -672831 sc-eQTL 7.71e-01 0.0233 0.0799 0.528 B_Memory LOneK1K
ENSG00000162601 MYSM1 -826106 sc-eQTL 8.44e-01 0.015 0.0763 0.528 B_Memory LOneK1K
ENSG00000177606 JUN -910076 sc-eQTL 2.59e-01 0.0666 0.0589 0.528 B_Memory LOneK1K
ENSG00000162600 OMA1 -672831 sc-eQTL 4.93e-01 -0.0458 0.0667 0.528 B_Naive LOneK1K
ENSG00000162601 MYSM1 -826106 sc-eQTL 2.79e-01 -0.0722 0.0665 0.528 B_Naive LOneK1K
ENSG00000177606 JUN -910076 sc-eQTL 7.06e-01 -0.0212 0.056 0.528 B_Naive LOneK1K
ENSG00000162600 OMA1 -672831 sc-eQTL 5.92e-01 0.0356 0.0663 0.528 CD14_Mono LOneK1K
ENSG00000162601 MYSM1 -826106 sc-eQTL 1.10e-01 0.106 0.0664 0.528 CD14_Mono LOneK1K
ENSG00000177606 JUN -910076 sc-eQTL 8.88e-01 0.00909 0.0642 0.528 CD14_Mono LOneK1K
ENSG00000162600 OMA1 -672831 sc-eQTL 3.42e-01 0.0657 0.069 0.53 CD16_Mono LOneK1K
ENSG00000162601 MYSM1 -826106 sc-eQTL 9.51e-01 0.00539 0.0868 0.53 CD16_Mono LOneK1K
ENSG00000177606 JUN -910076 sc-eQTL 4.53e-01 0.0501 0.0666 0.53 CD16_Mono LOneK1K
ENSG00000162600 OMA1 -672831 sc-eQTL 9.28e-02 0.122 0.0723 0.528 NK_CD56dim LOneK1K
ENSG00000162601 MYSM1 -826106 sc-eQTL 9.09e-01 0.00692 0.0608 0.528 NK_CD56dim LOneK1K
ENSG00000177606 JUN -910076 sc-eQTL 8.22e-01 -0.0123 0.0546 0.528 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000021852 C8B 907831 pQTL 0.0454 -0.0526 0.0263 0.0 0.0 0.427

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina