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Genes within 1Mb (chr1:53553176:C:CA):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000058799 YIPF1 -336622 sc-eQTL 9.38e-01 -0.0117 0.149 0.059 PB L2
ENSG00000058804 NDC1 -285287 sc-eQTL 4.89e-01 -0.154 0.222 0.059 PB L2
ENSG00000081870 HSPB11 -392753 sc-eQTL 4.11e-01 -0.154 0.186 0.059 PB L2
ENSG00000116157 GPX7 950805 sc-eQTL 2.62e-01 0.209 0.186 0.059 PB L2
ENSG00000116171 SCP2 625900 sc-eQTL 9.93e-01 -0.00141 0.162 0.059 PB L2
ENSG00000116205 TCEANC2 -500408 sc-eQTL 2.06e-01 -0.289 0.227 0.059 PB L2
ENSG00000116209 TMEM59 -500328 sc-eQTL 3.99e-01 -0.0808 0.0954 0.059 PB L2
ENSG00000116212 LRRC42 -392909 sc-eQTL 6.68e-01 -0.0927 0.216 0.059 PB L2
ENSG00000116221 MRPL37 -630865 sc-eQTL 3.15e-01 0.175 0.173 0.059 PB L2
ENSG00000121310 ECHDC2 625964 sc-eQTL 6.86e-01 -0.0974 0.24 0.059 PB L2
ENSG00000134744 TUT4 999689 sc-eQTL 6.64e-01 -0.0959 0.22 0.059 PB L2
ENSG00000157184 CPT2 356384 sc-eQTL 1.35e-01 0.308 0.205 0.059 PB L2
ENSG00000157193 LRP8 224707 sc-eQTL 6.61e-01 -0.0961 0.219 0.059 PB L2
ENSG00000157216 SSBP3 -860303 sc-eQTL 4.41e-01 0.155 0.2 0.059 PB L2
ENSG00000162377 COA7 854829 sc-eQTL 2.58e-01 0.241 0.212 0.059 PB L2
ENSG00000162378 ZYG11B 826723 sc-eQTL 8.07e-01 0.0572 0.233 0.059 PB L2
ENSG00000162384 CZIB 332542 sc-eQTL 9.50e-01 0.0144 0.228 0.059 PB L2
ENSG00000162385 MAGOH 314658 sc-eQTL 6.68e-01 0.0908 0.211 0.059 PB L2
ENSG00000182183 SHISAL2A 920008 sc-eQTL 3.39e-01 0.185 0.193 0.059 PB L2
ENSG00000215883 CYB5RL -646860 sc-eQTL 5.54e-01 -0.14 0.236 0.059 PB L2
ENSG00000230138 LINC02812 184931 sc-eQTL 1.96e-01 0.219 0.169 0.059 PB L2
ENSG00000058799 YIPF1 -336622 sc-eQTL 3.62e-01 0.191 0.208 0.058 gdT L2
ENSG00000058804 NDC1 -285287 sc-eQTL 6.16e-02 -0.381 0.202 0.058 gdT L2
ENSG00000081870 HSPB11 -392753 sc-eQTL 2.92e-01 0.246 0.232 0.058 gdT L2
ENSG00000116157 GPX7 950805 sc-eQTL 4.37e-01 0.161 0.207 0.058 gdT L2
ENSG00000116171 SCP2 625900 sc-eQTL 9.78e-01 0.00446 0.16 0.058 gdT L2
ENSG00000116205 TCEANC2 -500408 sc-eQTL 4.90e-01 -0.13 0.187 0.058 gdT L2
ENSG00000116209 TMEM59 -500328 sc-eQTL 5.68e-01 -0.109 0.19 0.058 gdT L2
ENSG00000116212 LRRC42 -392909 sc-eQTL 1.91e-01 -0.292 0.222 0.058 gdT L2
ENSG00000116221 MRPL37 -630865 sc-eQTL 8.82e-01 -0.0324 0.218 0.058 gdT L2
ENSG00000121310 ECHDC2 625964 sc-eQTL 2.02e-01 -0.295 0.23 0.058 gdT L2
ENSG00000134744 TUT4 999689 sc-eQTL 6.05e-02 0.416 0.22 0.058 gdT L2
ENSG00000157184 CPT2 356384 sc-eQTL 9.45e-01 -0.0153 0.221 0.058 gdT L2
ENSG00000157193 LRP8 224707 sc-eQTL 1.36e-01 -0.322 0.215 0.058 gdT L2
ENSG00000157216 SSBP3 -860303 sc-eQTL 7.76e-01 0.0381 0.134 0.058 gdT L2
ENSG00000162377 COA7 854829 sc-eQTL 4.75e-01 0.139 0.194 0.058 gdT L2
ENSG00000162378 ZYG11B 826723 sc-eQTL 8.71e-01 0.0345 0.211 0.058 gdT L2
ENSG00000162383 SLC1A7 410544 sc-eQTL 6.02e-01 0.0775 0.148 0.058 gdT L2
ENSG00000162384 CZIB 332542 sc-eQTL 8.86e-01 -0.0296 0.206 0.058 gdT L2
ENSG00000162385 MAGOH 314658 sc-eQTL 8.84e-02 0.357 0.208 0.058 gdT L2
ENSG00000182183 SHISAL2A 920008 sc-eQTL 5.46e-01 -0.121 0.2 0.058 gdT L2
ENSG00000215883 CYB5RL -646860 sc-eQTL 5.26e-01 -0.118 0.186 0.058 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000058804 NDC1 -285287 eQTL 7.97e-03 0.0973 0.0366 0.0027 0.0 0.0608
ENSG00000116171 SCP2 625900 eQTL 0.00816 0.0874 0.033 0.0 0.0 0.0608
ENSG00000121310 ECHDC2 625964 eQTL 0.00425 0.104 0.0363 0.0 0.0 0.0608
ENSG00000174348 PODN 491124 eQTL 0.0126 -0.0983 0.0393 0.0 0.0 0.0608

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000058804 NDC1 -285287 1.48e-05 5.79e-06 1.35e-06 2.94e-06 1.92e-06 3.5e-06 9e-06 5.85e-07 4.88e-06 2.17e-06 4.02e-06 1.77e-06 9.02e-06 2.24e-06 1.27e-06 2.66e-06 2.06e-06 3.78e-06 1.63e-06 9.64e-07 3.4e-06 6.58e-06 7.23e-06 1.82e-06 6.41e-06 1.36e-06 2.59e-06 1.84e-06 6.6e-06 4.04e-06 2.7e-06 2.83e-07 5.88e-07 1.77e-06 2.15e-06 1.15e-06 8.05e-07 4.72e-07 1.21e-06 3.34e-07 3.57e-07 1.18e-05 1.42e-06 1.44e-07 4.38e-07 1.21e-06 9.33e-07 1.71e-07 6.01e-07
ENSG00000116171 SCP2 625900 3e-06 1.33e-06 2.43e-07 4.15e-07 3.75e-07 7.23e-07 1.21e-06 8.37e-08 1.39e-06 3.89e-07 1.24e-06 6.07e-07 2.47e-06 2.63e-07 3.9e-07 8.11e-07 6.44e-07 1.34e-06 8.59e-07 3.93e-07 6.18e-07 1.93e-06 1.82e-06 1.71e-07 1.92e-06 3.66e-07 8.34e-07 7.81e-07 1.64e-06 1.08e-06 6.76e-07 5.46e-08 5.19e-08 2.97e-07 3.42e-07 3.02e-07 1.22e-07 1.17e-07 7.9e-08 2.8e-08 4.42e-08 2.22e-06 1.1e-07 3.4e-08 1.89e-07 1.34e-07 1.7e-07 1.95e-09 5.86e-08
ENSG00000121310 ECHDC2 625964 3e-06 1.34e-06 2.43e-07 4.15e-07 3.75e-07 7.23e-07 1.21e-06 8.37e-08 1.39e-06 3.89e-07 1.24e-06 6.07e-07 2.47e-06 2.63e-07 3.9e-07 8.11e-07 6.44e-07 1.34e-06 8.59e-07 3.93e-07 6.18e-07 1.89e-06 1.82e-06 1.71e-07 1.92e-06 3.66e-07 8.34e-07 7.81e-07 1.64e-06 1.08e-06 6.76e-07 5.46e-08 5.19e-08 2.97e-07 3.42e-07 3.02e-07 1.22e-07 1.17e-07 7.9e-08 2.8e-08 4.42e-08 2.22e-06 1.1e-07 3.4e-08 1.89e-07 1.34e-07 1.7e-07 1.95e-09 5.86e-08
ENSG00000157193 \N 225106 2.1e-05 7.94e-06 1.85e-06 3.36e-06 2.36e-06 4.19e-06 9.38e-06 8.31e-07 5.06e-06 2.88e-06 4.91e-06 2.85e-06 1.11e-05 2.02e-06 1.17e-06 3.81e-06 1.93e-06 3.8e-06 2.3e-06 1.18e-06 4.61e-06 7.66e-06 9.43e-06 1.4e-06 8.59e-06 1.95e-06 2.27e-06 1.77e-06 7.85e-06 4.34e-06 2.64e-06 3.04e-07 6.22e-07 1.52e-06 2.06e-06 1.39e-06 9.24e-07 4.08e-07 1.3e-06 3.99e-07 1.52e-07 1.4e-05 1.6e-06 2.07e-07 8.18e-07 8.44e-07 1.16e-06 2.3e-07 4.39e-07