Genes within 1Mb (chr1:52014238:T:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 135301 eQTL 3.87e-08 0.06 0.0108 0.0 0.0 0.14
ENSG00000085831 TTC39A 669122 eQTL 1.32e-01 0.0514 0.0341 0.00104 0.0 0.14
ENSG00000116157 GPX7 -588133 eQTL 3.58e-30 -0.388 0.0329 0.0 0.0 0.14
ENSG00000117859 OSBPL9 437059 eQTL 2.84e-07 -0.098 0.019 0.0 0.0 0.14
ENSG00000117862 TXNDC12 -41933 eQTL 1.82e-03 0.0491 0.0157 0.0 0.0 0.14
ENSG00000154222 CC2D1B -351955 eQTL 1.72e-35 -0.295 0.0228 0.0 0.0 0.14
ENSG00000182183 SHISAL2A -618930 eQTL 3.36e-04 -0.0861 0.0239 0.0 0.0 0.14
ENSG00000198841 KTI12 -19578 eQTL 4.71e-10 0.146 0.0233 0.0 0.0 0.14
ENSG00000228407 AL139156.2 -146362 eQTL 3.86e-03 -0.109 0.0377 0.00248 0.00211 0.14
ENSG00000236973 GAPDHP51 306101 eQTL 6.69e-02 -0.0775 0.0422 0.00101 0.0 0.14


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 135301 4e-06 4.65e-06 7.79e-07 2.27e-06 7.91e-07 8.19e-07 2.95e-06 9.12e-07 3.5e-06 1.68e-06 4.22e-06 2.74e-06 6.47e-06 1.37e-06 9.69e-07 2.49e-06 1.97e-06 2.89e-06 1.42e-06 9.15e-07 1.92e-06 4.14e-06 3.51e-06 1.8e-06 4.83e-06 1.29e-06 2.21e-06 1.46e-06 3.87e-06 3.32e-06 1.93e-06 5.76e-07 7.09e-07 1.59e-06 1.76e-06 8.71e-07 9.07e-07 4.47e-07 1.32e-06 3.28e-07 2.25e-07 4.9e-06 3.97e-07 1.85e-07 3.51e-07 3.22e-07 7.84e-07 2.26e-07 3.23e-07
ENSG00000085831 TTC39A 669122 2.91e-07 1.53e-07 5.35e-08 2.05e-07 1.01e-07 9.48e-08 1.9e-07 5.75e-08 1.5e-07 6.08e-08 1.59e-07 1.11e-07 1.87e-07 7.64e-08 5.98e-08 7.97e-08 4.45e-08 1.56e-07 7.12e-08 4.92e-08 1.27e-07 1.39e-07 1.58e-07 3.22e-08 1.68e-07 1.22e-07 1.12e-07 1.01e-07 1.26e-07 1.07e-07 1.07e-07 3.93e-08 3.13e-08 8.89e-08 5.64e-08 3.14e-08 4.49e-08 8.72e-08 6.76e-08 3.75e-08 5.37e-08 1.59e-07 3.4e-08 7.26e-09 2.82e-08 1.8e-08 1.15e-07 1.95e-09 4.82e-08
ENSG00000116157 GPX7 -588133 3.21e-07 1.78e-07 6.15e-08 2.27e-07 1.03e-07 8.33e-08 2.4e-07 5.78e-08 1.71e-07 9.35e-08 1.83e-07 1.31e-07 2.38e-07 8.07e-08 5.36e-08 9.01e-08 5.27e-08 1.91e-07 7.36e-08 5.87e-08 1.26e-07 1.81e-07 1.69e-07 4.07e-08 2.17e-07 1.31e-07 1.22e-07 1.1e-07 1.37e-07 1.36e-07 1.26e-07 4.4e-08 4.23e-08 9.8e-08 3.07e-08 2.79e-08 5.26e-08 8.2e-08 6.21e-08 5.45e-08 5.42e-08 1.68e-07 3.2e-08 2.06e-08 3.3e-08 8.31e-09 8.67e-08 2.13e-09 4.67e-08
ENSG00000117859 OSBPL9 437059 7.3e-07 5.67e-07 9.16e-08 3.58e-07 1.05e-07 1.5e-07 5.01e-07 9.91e-08 3.17e-07 1.78e-07 4.88e-07 3.08e-07 6.08e-07 1.07e-07 1.26e-07 1.92e-07 2.48e-07 3.56e-07 1.69e-07 9.17e-08 1.8e-07 3.34e-07 3.07e-07 1.23e-07 5.53e-07 2.32e-07 2.22e-07 1.88e-07 2.78e-07 4.3e-07 2.19e-07 7.71e-08 5.77e-08 1.27e-07 1.69e-07 6.23e-08 1.1e-07 6.56e-08 4.11e-08 6.07e-08 3.2e-08 4.95e-07 4.47e-08 5.71e-09 1.01e-07 1.78e-08 9.98e-08 7.14e-09 5.05e-08
ENSG00000121310 \N -912974 2.69e-07 1.25e-07 3.72e-08 1.82e-07 8.83e-08 9.87e-08 1.44e-07 5.19e-08 1.41e-07 4.57e-08 1.6e-07 8.14e-08 1.41e-07 6.38e-08 5.84e-08 7.17e-08 3.94e-08 1.18e-07 5.39e-08 4.42e-08 1.04e-07 1.27e-07 1.34e-07 3.68e-08 1.32e-07 1.14e-07 1.08e-07 9.32e-08 1.05e-07 1.1e-07 9.91e-08 4.09e-08 3.35e-08 8.49e-08 8.87e-08 3.77e-08 5.11e-08 9.62e-08 6.78e-08 3.37e-08 4.35e-08 1.35e-07 5.2e-08 1.27e-08 5.43e-08 1.83e-08 1.24e-07 3.86e-09 4.79e-08
ENSG00000154222 CC2D1B -351955 1.17e-06 8.9e-07 1.6e-07 4.25e-07 1.18e-07 2.63e-07 7.02e-07 2.21e-07 7.08e-07 3.04e-07 1.08e-06 5.22e-07 1.1e-06 1.72e-07 3.08e-07 3.79e-07 6.29e-07 4.52e-07 3.01e-07 2.27e-07 2.42e-07 5.66e-07 4.96e-07 3.06e-07 1.28e-06 2.49e-07 4.68e-07 3.24e-07 5.7e-07 8.48e-07 3.95e-07 5.45e-08 6.78e-08 1.67e-07 3.52e-07 1.52e-07 1.91e-07 1.06e-07 8.72e-08 2.28e-08 8.81e-08 1.02e-06 5.65e-08 2.68e-08 1.94e-07 3.92e-08 1.11e-07 4.41e-08 5.81e-08
ENSG00000182183 SHISAL2A -618930 3.07e-07 1.7e-07 5.93e-08 2.2e-07 9.8e-08 8.33e-08 2.16e-07 5.56e-08 1.54e-07 7.6e-08 1.66e-07 1.22e-07 2.24e-07 8.13e-08 5.94e-08 8.08e-08 4.35e-08 1.72e-07 7.16e-08 5.46e-08 1.18e-07 1.65e-07 1.64e-07 3.42e-08 1.98e-07 1.26e-07 1.19e-07 1.04e-07 1.31e-07 1.17e-07 1.14e-07 3.84e-08 3.56e-08 9.52e-08 3.81e-08 3.22e-08 4.54e-08 8.89e-08 6.5e-08 4.24e-08 5.44e-08 1.55e-07 3.53e-08 1.56e-08 3.36e-08 1.55e-08 8.74e-08 2.05e-09 4.94e-08
ENSG00000198841 KTI12 -19578 1.77e-05 2.26e-05 4.87e-06 1.3e-05 3.8e-06 9.8e-06 3.09e-05 3.82e-06 2.24e-05 1.19e-05 2.86e-05 1.13e-05 3.69e-05 9.05e-06 5.35e-06 1.26e-05 1.1e-05 1.96e-05 6.02e-06 5.62e-06 1.01e-05 2.37e-05 2.24e-05 7.45e-06 3.26e-05 6.09e-06 9.65e-06 9.23e-06 2.39e-05 1.99e-05 1.41e-05 1.58e-06 2e-06 5.98e-06 9.27e-06 4.58e-06 2.4e-06 2.88e-06 3.74e-06 3.01e-06 1.7e-06 2.67e-05 2.64e-06 3.62e-07 2.04e-06 2.95e-06 3.46e-06 1.42e-06 1.53e-06