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Genes within 1Mb (chr1:51875370:GA:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC -3567 sc-eQTL 6.33e-02 -0.432 0.231 0.051 B_Activated L2
ENSG00000085832 EPS15 356104 sc-eQTL 4.60e-01 0.164 0.221 0.051 B_Activated L2
ENSG00000116157 GPX7 -727001 sc-eQTL 1.01e-01 0.35 0.212 0.051 B_Activated L2
ENSG00000117859 OSBPL9 298191 sc-eQTL 2.54e-01 0.263 0.229 0.051 B_Activated L2
ENSG00000117862 TXNDC12 -180801 sc-eQTL 6.34e-01 0.104 0.219 0.051 B_Activated L2
ENSG00000123080 CDKN2C 914625 sc-eQTL 7.38e-01 0.0562 0.168 0.051 B_Activated L2
ENSG00000123091 RNF11 639097 sc-eQTL 1.01e-01 -0.34 0.206 0.051 B_Activated L2
ENSG00000134717 BTF3L4 -180829 sc-eQTL 5.77e-01 0.129 0.231 0.051 B_Activated L2
ENSG00000134744 TUT4 -678117 sc-eQTL 8.78e-01 0.033 0.215 0.051 B_Activated L2
ENSG00000134748 PRPF38A -529232 sc-eQTL 1.98e-01 -0.28 0.216 0.051 B_Activated L2
ENSG00000154222 CC2D1B -490823 sc-eQTL 8.35e-01 -0.0443 0.212 0.051 B_Activated L2
ENSG00000162377 COA7 -822977 sc-eQTL 7.50e-01 0.0577 0.181 0.051 B_Activated L2
ENSG00000162378 ZYG11B -851083 sc-eQTL 5.29e-01 0.14 0.221 0.051 B_Activated L2
ENSG00000182183 SHISAL2A -757798 sc-eQTL 2.74e-01 0.213 0.194 0.051 B_Activated L2
ENSG00000185104 FAF1 915103 sc-eQTL 5.43e-01 -0.127 0.209 0.051 B_Activated L2
ENSG00000198841 KTI12 -158440 sc-eQTL 7.74e-01 0.0534 0.186 0.051 B_Activated L2
ENSG00000078618 NRDC -3567 sc-eQTL 8.96e-02 -0.359 0.21 0.05 CD4_CTL L2
ENSG00000085832 EPS15 356104 sc-eQTL 4.56e-01 -0.14 0.188 0.05 CD4_CTL L2
ENSG00000116157 GPX7 -727001 sc-eQTL 9.16e-01 0.0219 0.208 0.05 CD4_CTL L2
ENSG00000117859 OSBPL9 298191 sc-eQTL 2.56e-01 -0.248 0.218 0.05 CD4_CTL L2
ENSG00000117862 TXNDC12 -180801 sc-eQTL 2.25e-01 0.248 0.204 0.05 CD4_CTL L2
ENSG00000123080 CDKN2C 914625 sc-eQTL 1.20e-01 -0.325 0.209 0.05 CD4_CTL L2
ENSG00000123091 RNF11 639097 sc-eQTL 4.90e-01 0.137 0.198 0.05 CD4_CTL L2
ENSG00000134717 BTF3L4 -180829 sc-eQTL 2.03e-01 0.264 0.207 0.05 CD4_CTL L2
ENSG00000134744 TUT4 -678117 sc-eQTL 3.71e-01 -0.175 0.196 0.05 CD4_CTL L2
ENSG00000134748 PRPF38A -529232 sc-eQTL 4.53e-02 0.416 0.206 0.05 CD4_CTL L2
ENSG00000154222 CC2D1B -490823 sc-eQTL 8.44e-01 0.041 0.208 0.05 CD4_CTL L2
ENSG00000157077 ZFYVE9 -266724 sc-eQTL 4.93e-01 -0.131 0.191 0.05 CD4_CTL L2
ENSG00000162378 ZYG11B -851083 sc-eQTL 2.54e-01 0.234 0.204 0.05 CD4_CTL L2
ENSG00000182183 SHISAL2A -757798 sc-eQTL 4.52e-01 0.14 0.185 0.05 CD4_CTL L2
ENSG00000185104 FAF1 915103 sc-eQTL 5.20e-01 -0.114 0.177 0.05 CD4_CTL L2
ENSG00000198841 KTI12 -158440 sc-eQTL 1.88e-01 -0.264 0.2 0.05 CD4_CTL L2
ENSG00000078618 NRDC -3567 sc-eQTL 8.52e-01 -0.0384 0.206 0.051 CD8_TCM L2
ENSG00000085832 EPS15 356104 sc-eQTL 6.11e-01 -0.104 0.203 0.051 CD8_TCM L2
ENSG00000116157 GPX7 -727001 sc-eQTL 1.05e-02 0.554 0.214 0.051 CD8_TCM L2
ENSG00000117859 OSBPL9 298191 sc-eQTL 9.63e-01 0.0102 0.221 0.051 CD8_TCM L2
ENSG00000117862 TXNDC12 -180801 sc-eQTL 8.02e-01 0.0502 0.2 0.051 CD8_TCM L2
ENSG00000123080 CDKN2C 914625 sc-eQTL 2.14e-01 -0.244 0.196 0.051 CD8_TCM L2
ENSG00000123091 RNF11 639097 sc-eQTL 1.65e-01 0.285 0.204 0.051 CD8_TCM L2
ENSG00000134717 BTF3L4 -180829 sc-eQTL 4.59e-01 0.151 0.204 0.051 CD8_TCM L2
ENSG00000134744 TUT4 -678117 sc-eQTL 5.37e-01 -0.124 0.2 0.051 CD8_TCM L2
ENSG00000134748 PRPF38A -529232 sc-eQTL 8.73e-01 0.0319 0.199 0.051 CD8_TCM L2
ENSG00000154222 CC2D1B -490823 sc-eQTL 6.26e-01 0.0975 0.2 0.051 CD8_TCM L2
ENSG00000157077 ZFYVE9 -266724 sc-eQTL 4.63e-01 0.15 0.204 0.051 CD8_TCM L2
ENSG00000162378 ZYG11B -851083 sc-eQTL 3.52e-01 -0.186 0.2 0.051 CD8_TCM L2
ENSG00000182183 SHISAL2A -757798 sc-eQTL 4.02e-01 0.165 0.197 0.051 CD8_TCM L2
ENSG00000185104 FAF1 915103 sc-eQTL 2.67e-01 0.204 0.184 0.051 CD8_TCM L2
ENSG00000198841 KTI12 -158440 sc-eQTL 5.38e-01 0.129 0.21 0.051 CD8_TCM L2
ENSG00000078618 NRDC -3567 sc-eQTL 2.88e-01 -0.206 0.193 0.054 cDC L2
ENSG00000085831 TTC39A 530254 sc-eQTL 3.80e-01 -0.0555 0.0631 0.054 cDC L2
ENSG00000085832 EPS15 356104 sc-eQTL 1.74e-01 -0.293 0.215 0.054 cDC L2
ENSG00000116157 GPX7 -727001 sc-eQTL 1.48e-01 0.258 0.178 0.054 cDC L2
ENSG00000117859 OSBPL9 298191 sc-eQTL 4.83e-01 0.139 0.198 0.054 cDC L2
ENSG00000117862 TXNDC12 -180801 sc-eQTL 2.66e-01 0.21 0.188 0.054 cDC L2
ENSG00000123080 CDKN2C 914625 sc-eQTL 9.91e-01 -0.00234 0.204 0.054 cDC L2
ENSG00000123091 RNF11 639097 sc-eQTL 9.57e-01 -0.0115 0.211 0.054 cDC L2
ENSG00000134717 BTF3L4 -180829 sc-eQTL 9.27e-01 0.0175 0.191 0.054 cDC L2
ENSG00000134744 TUT4 -678117 sc-eQTL 8.83e-01 0.0312 0.212 0.054 cDC L2
ENSG00000134748 PRPF38A -529232 sc-eQTL 7.07e-01 -0.0736 0.195 0.054 cDC L2
ENSG00000154222 CC2D1B -490823 sc-eQTL 2.16e-01 0.263 0.212 0.054 cDC L2
ENSG00000162377 COA7 -822977 sc-eQTL 8.25e-01 0.0446 0.202 0.054 cDC L2
ENSG00000162378 ZYG11B -851083 sc-eQTL 7.90e-01 0.0567 0.212 0.054 cDC L2
ENSG00000185104 FAF1 915103 sc-eQTL 3.76e-02 -0.394 0.188 0.054 cDC L2
ENSG00000198841 KTI12 -158440 sc-eQTL 1.38e-01 0.296 0.199 0.054 cDC L2
ENSG00000078618 NRDC -3567 sc-eQTL 1.92e-01 -0.224 0.171 0.059 pDC L2
ENSG00000085831 TTC39A 530254 sc-eQTL 7.43e-01 0.0545 0.166 0.059 pDC L2
ENSG00000085832 EPS15 356104 sc-eQTL 7.76e-01 -0.0607 0.213 0.059 pDC L2
ENSG00000116157 GPX7 -727001 sc-eQTL 5.91e-01 -0.0864 0.16 0.059 pDC L2
ENSG00000117859 OSBPL9 298191 sc-eQTL 3.69e-01 -0.186 0.207 0.059 pDC L2
ENSG00000117862 TXNDC12 -180801 sc-eQTL 5.87e-01 -0.113 0.207 0.059 pDC L2
ENSG00000123080 CDKN2C 914625 sc-eQTL 9.53e-01 0.0105 0.177 0.059 pDC L2
ENSG00000123091 RNF11 639097 sc-eQTL 5.36e-01 0.0953 0.153 0.059 pDC L2
ENSG00000134717 BTF3L4 -180829 sc-eQTL 4.25e-01 -0.162 0.203 0.059 pDC L2
ENSG00000134744 TUT4 -678117 sc-eQTL 6.68e-01 -0.0742 0.173 0.059 pDC L2
ENSG00000134748 PRPF38A -529232 sc-eQTL 6.31e-01 0.107 0.222 0.059 pDC L2
ENSG00000154222 CC2D1B -490823 sc-eQTL 5.44e-01 -0.128 0.211 0.059 pDC L2
ENSG00000162377 COA7 -822977 sc-eQTL 4.05e-01 0.143 0.171 0.059 pDC L2
ENSG00000162378 ZYG11B -851083 sc-eQTL 8.94e-01 0.0276 0.206 0.059 pDC L2
ENSG00000185104 FAF1 915103 sc-eQTL 1.92e-01 0.275 0.21 0.059 pDC L2
ENSG00000198841 KTI12 -158440 sc-eQTL 2.85e-01 0.21 0.196 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC -3567 eQTL 3.28e-10 -0.119 0.0188 0.00177 0.0197 0.0407
ENSG00000085831 TTC39A 530254 eQTL 0.0319 -0.128 0.0595 0.00153 0.0 0.0407
ENSG00000116157 GPX7 -727001 eQTL 0.145 0.0894 0.0613 0.00128 0.0 0.0407
ENSG00000134717 BTF3L4 -180829 eQTL 1.78e-02 -0.0776 0.0327 0.0018 0.0 0.0407
ENSG00000134748 PRPF38A -529232 eQTL 2.84e-02 0.102 0.0464 0.00144 0.0 0.0407
ENSG00000154222 CC2D1B -490823 eQTL 1.21e-09 0.26 0.0423 0.0 0.0 0.0407
ENSG00000182183 SHISAL2A -757798 eQTL 0.0122 0.105 0.0419 0.0 0.0 0.0407
ENSG00000185104 FAF1 915103 eQTL 0.0239 0.0767 0.0339 0.00172 0.0 0.0407
ENSG00000266993 AL050343.1 81436 eQTL 2.18e-07 -0.275 0.0527 0.00919 0.0081 0.0407

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC -3567 7.44e-05 5.25e-05 6.44e-06 1.71e-05 7.14e-06 1.86e-05 5.83e-05 6.22e-06 5.2e-05 2.15e-05 7.13e-05 2.37e-05 8.55e-05 2.25e-05 9.33e-06 3.03e-05 2.28e-05 3.66e-05 1.09e-05 9.02e-06 2.21e-05 5.87e-05 4.5e-05 1.09e-05 6.47e-05 1.25e-05 2.27e-05 1.84e-05 4.84e-05 2.64e-05 3.18e-05 1.65e-06 3.57e-06 8.99e-06 1.21e-05 6.29e-06 3.39e-06 3.25e-06 6.91e-06 3.69e-06 1.72e-06 6.97e-05 5.69e-06 3.18e-07 3.09e-06 5.25e-06 4.88e-06 2.14e-06 1.78e-06
ENSG00000123091 \N 639097 2.96e-06 9.07e-07 4.68e-07 1.21e-06 1.87e-07 6.3e-07 1.25e-06 1.59e-07 1.38e-06 4.7e-07 2.05e-06 5.22e-07 2.72e-06 2.72e-07 5.31e-07 8.48e-07 7.7e-07 7.94e-07 8.01e-07 6.26e-07 7.41e-07 1.98e-06 1.59e-06 5.82e-07 2.22e-06 4.39e-07 7.31e-07 9.25e-07 1.33e-06 1.31e-06 5.66e-07 7.4e-08 1.88e-07 6.94e-07 5.3e-07 5.35e-07 2.46e-07 1.18e-07 7.54e-08 4.28e-08 1.22e-07 3.99e-06 4.01e-07 1.66e-07 9.95e-08 3.28e-07 1.17e-07 1.2e-08 5.56e-08
ENSG00000154222 CC2D1B -490823 4.49e-06 1.4e-06 6.91e-07 1.7e-06 3.48e-07 7.89e-07 2.08e-06 3.27e-07 1.72e-06 6.9e-07 1.97e-06 5.86e-07 3.48e-06 3.07e-07 4.36e-07 9.69e-07 9.31e-07 1.33e-06 5.34e-07 4.5e-07 1.14e-06 2.88e-06 2.61e-06 5.54e-07 2.57e-06 1e-06 1.03e-06 1.32e-06 1.63e-06 1.84e-06 8.22e-07 4.44e-08 4.19e-07 6.91e-07 8.76e-07 9.71e-07 5.31e-07 2.29e-07 2.18e-07 2.03e-07 2.67e-07 5.62e-06 8.6e-07 1.55e-07 1.89e-07 3.72e-07 2.01e-07 8.41e-08 9.42e-08
ENSG00000228929 \N -897278 1.27e-06 5.67e-07 3.41e-07 3.44e-07 1.07e-07 4.08e-07 1.18e-06 5.89e-08 6.03e-07 3.17e-07 1.35e-06 2.11e-07 1.57e-06 1.17e-07 2.44e-07 2.85e-07 1.73e-07 5.02e-07 3.26e-07 1.31e-07 2.8e-07 9.64e-07 8.26e-07 1.78e-07 1.47e-06 2.71e-07 3.04e-07 3.95e-07 5.7e-07 1.08e-06 3.38e-07 3.1e-08 4.49e-08 1.75e-07 3.69e-07 2.59e-07 6.39e-08 5.71e-08 5.69e-08 7.53e-08 5.71e-08 2.04e-06 4.11e-07 1.86e-07 3.2e-08 7.43e-08 8.98e-08 2.07e-09 5.01e-08
ENSG00000232846 \N 166308 1.8e-05 9.55e-06 4.24e-06 4.85e-06 1.82e-06 4.14e-06 1.12e-05 1.29e-06 6.96e-06 3.16e-06 1.07e-05 3.72e-06 1.34e-05 3.66e-06 3.67e-06 6.29e-06 3.61e-06 4.69e-06 2.18e-06 2.51e-06 4.72e-06 9.49e-06 1.21e-05 2.42e-06 1.22e-05 2.35e-06 3.62e-06 3.34e-06 1.02e-05 5.55e-06 3.88e-06 4.2e-07 1.29e-06 2.78e-06 2.82e-06 2.43e-06 9.81e-07 9.53e-07 9.69e-07 9.72e-07 5.68e-07 2.39e-05 2.95e-06 1.83e-07 5.77e-07 1.78e-06 9.89e-07 5.83e-07 5.67e-07
ENSG00000266993 AL050343.1 81436 2.99e-05 1.38e-05 6.07e-06 7.89e-06 2.42e-06 7.51e-06 2.17e-05 2.18e-06 1.35e-05 5.57e-06 1.79e-05 6.75e-06 2.49e-05 4.15e-06 5.19e-06 9.08e-06 6.23e-06 1.11e-05 3.55e-06 2.84e-06 6.48e-06 1.4e-05 2.34e-05 3.43e-06 2.18e-05 4.49e-06 5.62e-06 5.26e-06 2.01e-05 7.87e-06 7.63e-06 8.91e-07 1.33e-06 3.37e-06 4.78e-06 2.85e-06 1.55e-06 1.95e-06 2.23e-06 2.49e-06 8.61e-07 4.09e-05 3.68e-06 1.63e-07 7.56e-07 2.61e-06 1.16e-06 7.33e-07 1.54e-06