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Genes within 1Mb (chr1:51872868:CCTTTA:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC -6069 sc-eQTL 6.33e-02 -0.432 0.231 0.051 B_Activated L2
ENSG00000085832 EPS15 353602 sc-eQTL 4.60e-01 0.164 0.221 0.051 B_Activated L2
ENSG00000116157 GPX7 -729503 sc-eQTL 1.01e-01 0.35 0.212 0.051 B_Activated L2
ENSG00000117859 OSBPL9 295689 sc-eQTL 2.54e-01 0.263 0.229 0.051 B_Activated L2
ENSG00000117862 TXNDC12 -183303 sc-eQTL 6.34e-01 0.104 0.219 0.051 B_Activated L2
ENSG00000123080 CDKN2C 912123 sc-eQTL 7.38e-01 0.0562 0.168 0.051 B_Activated L2
ENSG00000123091 RNF11 636595 sc-eQTL 1.01e-01 -0.34 0.206 0.051 B_Activated L2
ENSG00000134717 BTF3L4 -183331 sc-eQTL 5.77e-01 0.129 0.231 0.051 B_Activated L2
ENSG00000134744 TUT4 -680619 sc-eQTL 8.78e-01 0.033 0.215 0.051 B_Activated L2
ENSG00000134748 PRPF38A -531734 sc-eQTL 1.98e-01 -0.28 0.216 0.051 B_Activated L2
ENSG00000154222 CC2D1B -493325 sc-eQTL 8.35e-01 -0.0443 0.212 0.051 B_Activated L2
ENSG00000162377 COA7 -825479 sc-eQTL 7.50e-01 0.0577 0.181 0.051 B_Activated L2
ENSG00000162378 ZYG11B -853585 sc-eQTL 5.29e-01 0.14 0.221 0.051 B_Activated L2
ENSG00000182183 SHISAL2A -760300 sc-eQTL 2.74e-01 0.213 0.194 0.051 B_Activated L2
ENSG00000185104 FAF1 912601 sc-eQTL 5.43e-01 -0.127 0.209 0.051 B_Activated L2
ENSG00000198841 KTI12 -160942 sc-eQTL 7.74e-01 0.0534 0.186 0.051 B_Activated L2
ENSG00000078618 NRDC -6069 sc-eQTL 8.96e-02 -0.359 0.21 0.05 CD4_CTL L2
ENSG00000085832 EPS15 353602 sc-eQTL 4.56e-01 -0.14 0.188 0.05 CD4_CTL L2
ENSG00000116157 GPX7 -729503 sc-eQTL 9.16e-01 0.0219 0.208 0.05 CD4_CTL L2
ENSG00000117859 OSBPL9 295689 sc-eQTL 2.56e-01 -0.248 0.218 0.05 CD4_CTL L2
ENSG00000117862 TXNDC12 -183303 sc-eQTL 2.25e-01 0.248 0.204 0.05 CD4_CTL L2
ENSG00000123080 CDKN2C 912123 sc-eQTL 1.20e-01 -0.325 0.209 0.05 CD4_CTL L2
ENSG00000123091 RNF11 636595 sc-eQTL 4.90e-01 0.137 0.198 0.05 CD4_CTL L2
ENSG00000134717 BTF3L4 -183331 sc-eQTL 2.03e-01 0.264 0.207 0.05 CD4_CTL L2
ENSG00000134744 TUT4 -680619 sc-eQTL 3.71e-01 -0.175 0.196 0.05 CD4_CTL L2
ENSG00000134748 PRPF38A -531734 sc-eQTL 4.53e-02 0.416 0.206 0.05 CD4_CTL L2
ENSG00000154222 CC2D1B -493325 sc-eQTL 8.44e-01 0.041 0.208 0.05 CD4_CTL L2
ENSG00000157077 ZFYVE9 -269226 sc-eQTL 4.93e-01 -0.131 0.191 0.05 CD4_CTL L2
ENSG00000162378 ZYG11B -853585 sc-eQTL 2.54e-01 0.234 0.204 0.05 CD4_CTL L2
ENSG00000182183 SHISAL2A -760300 sc-eQTL 4.52e-01 0.14 0.185 0.05 CD4_CTL L2
ENSG00000185104 FAF1 912601 sc-eQTL 5.20e-01 -0.114 0.177 0.05 CD4_CTL L2
ENSG00000198841 KTI12 -160942 sc-eQTL 1.88e-01 -0.264 0.2 0.05 CD4_CTL L2
ENSG00000078618 NRDC -6069 sc-eQTL 8.52e-01 -0.0384 0.206 0.051 CD8_TCM L2
ENSG00000085832 EPS15 353602 sc-eQTL 6.11e-01 -0.104 0.203 0.051 CD8_TCM L2
ENSG00000116157 GPX7 -729503 sc-eQTL 1.05e-02 0.554 0.214 0.051 CD8_TCM L2
ENSG00000117859 OSBPL9 295689 sc-eQTL 9.63e-01 0.0102 0.221 0.051 CD8_TCM L2
ENSG00000117862 TXNDC12 -183303 sc-eQTL 8.02e-01 0.0502 0.2 0.051 CD8_TCM L2
ENSG00000123080 CDKN2C 912123 sc-eQTL 2.14e-01 -0.244 0.196 0.051 CD8_TCM L2
ENSG00000123091 RNF11 636595 sc-eQTL 1.65e-01 0.285 0.204 0.051 CD8_TCM L2
ENSG00000134717 BTF3L4 -183331 sc-eQTL 4.59e-01 0.151 0.204 0.051 CD8_TCM L2
ENSG00000134744 TUT4 -680619 sc-eQTL 5.37e-01 -0.124 0.2 0.051 CD8_TCM L2
ENSG00000134748 PRPF38A -531734 sc-eQTL 8.73e-01 0.0319 0.199 0.051 CD8_TCM L2
ENSG00000154222 CC2D1B -493325 sc-eQTL 6.26e-01 0.0975 0.2 0.051 CD8_TCM L2
ENSG00000157077 ZFYVE9 -269226 sc-eQTL 4.63e-01 0.15 0.204 0.051 CD8_TCM L2
ENSG00000162378 ZYG11B -853585 sc-eQTL 3.52e-01 -0.186 0.2 0.051 CD8_TCM L2
ENSG00000182183 SHISAL2A -760300 sc-eQTL 4.02e-01 0.165 0.197 0.051 CD8_TCM L2
ENSG00000185104 FAF1 912601 sc-eQTL 2.67e-01 0.204 0.184 0.051 CD8_TCM L2
ENSG00000198841 KTI12 -160942 sc-eQTL 5.38e-01 0.129 0.21 0.051 CD8_TCM L2
ENSG00000078618 NRDC -6069 sc-eQTL 2.88e-01 -0.206 0.193 0.054 cDC L2
ENSG00000085831 TTC39A 527752 sc-eQTL 3.80e-01 -0.0555 0.0631 0.054 cDC L2
ENSG00000085832 EPS15 353602 sc-eQTL 1.74e-01 -0.293 0.215 0.054 cDC L2
ENSG00000116157 GPX7 -729503 sc-eQTL 1.48e-01 0.258 0.178 0.054 cDC L2
ENSG00000117859 OSBPL9 295689 sc-eQTL 4.83e-01 0.139 0.198 0.054 cDC L2
ENSG00000117862 TXNDC12 -183303 sc-eQTL 2.66e-01 0.21 0.188 0.054 cDC L2
ENSG00000123080 CDKN2C 912123 sc-eQTL 9.91e-01 -0.00234 0.204 0.054 cDC L2
ENSG00000123091 RNF11 636595 sc-eQTL 9.57e-01 -0.0115 0.211 0.054 cDC L2
ENSG00000134717 BTF3L4 -183331 sc-eQTL 9.27e-01 0.0175 0.191 0.054 cDC L2
ENSG00000134744 TUT4 -680619 sc-eQTL 8.83e-01 0.0312 0.212 0.054 cDC L2
ENSG00000134748 PRPF38A -531734 sc-eQTL 7.07e-01 -0.0736 0.195 0.054 cDC L2
ENSG00000154222 CC2D1B -493325 sc-eQTL 2.16e-01 0.263 0.212 0.054 cDC L2
ENSG00000162377 COA7 -825479 sc-eQTL 8.25e-01 0.0446 0.202 0.054 cDC L2
ENSG00000162378 ZYG11B -853585 sc-eQTL 7.90e-01 0.0567 0.212 0.054 cDC L2
ENSG00000185104 FAF1 912601 sc-eQTL 3.76e-02 -0.394 0.188 0.054 cDC L2
ENSG00000198841 KTI12 -160942 sc-eQTL 1.38e-01 0.296 0.199 0.054 cDC L2
ENSG00000078618 NRDC -6069 sc-eQTL 1.92e-01 -0.224 0.171 0.059 pDC L2
ENSG00000085831 TTC39A 527752 sc-eQTL 7.43e-01 0.0545 0.166 0.059 pDC L2
ENSG00000085832 EPS15 353602 sc-eQTL 7.76e-01 -0.0607 0.213 0.059 pDC L2
ENSG00000116157 GPX7 -729503 sc-eQTL 5.91e-01 -0.0864 0.16 0.059 pDC L2
ENSG00000117859 OSBPL9 295689 sc-eQTL 3.69e-01 -0.186 0.207 0.059 pDC L2
ENSG00000117862 TXNDC12 -183303 sc-eQTL 5.87e-01 -0.113 0.207 0.059 pDC L2
ENSG00000123080 CDKN2C 912123 sc-eQTL 9.53e-01 0.0105 0.177 0.059 pDC L2
ENSG00000123091 RNF11 636595 sc-eQTL 5.36e-01 0.0953 0.153 0.059 pDC L2
ENSG00000134717 BTF3L4 -183331 sc-eQTL 4.25e-01 -0.162 0.203 0.059 pDC L2
ENSG00000134744 TUT4 -680619 sc-eQTL 6.68e-01 -0.0742 0.173 0.059 pDC L2
ENSG00000134748 PRPF38A -531734 sc-eQTL 6.31e-01 0.107 0.222 0.059 pDC L2
ENSG00000154222 CC2D1B -493325 sc-eQTL 5.44e-01 -0.128 0.211 0.059 pDC L2
ENSG00000162377 COA7 -825479 sc-eQTL 4.05e-01 0.143 0.171 0.059 pDC L2
ENSG00000162378 ZYG11B -853585 sc-eQTL 8.94e-01 0.0276 0.206 0.059 pDC L2
ENSG00000185104 FAF1 912601 sc-eQTL 1.92e-01 0.275 0.21 0.059 pDC L2
ENSG00000198841 KTI12 -160942 sc-eQTL 2.85e-01 0.21 0.196 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC -6069 eQTL 3.2e-10 -0.119 0.0188 0.00178 0.0202 0.0407
ENSG00000085831 TTC39A 527752 eQTL 0.0321 -0.128 0.0595 0.00153 0.0 0.0407
ENSG00000116157 GPX7 -729503 eQTL 0.145 0.0894 0.0613 0.00128 0.0 0.0407
ENSG00000134717 BTF3L4 -183331 eQTL 1.79e-02 -0.0775 0.0327 0.0018 0.0 0.0407
ENSG00000134748 PRPF38A -531734 eQTL 2.83e-02 0.102 0.0464 0.00144 0.0 0.0407
ENSG00000154222 CC2D1B -493325 eQTL 1.22e-09 0.26 0.0423 0.0 0.0 0.0407
ENSG00000182183 SHISAL2A -760300 eQTL 0.0123 0.105 0.0419 0.0 0.0 0.0407
ENSG00000185104 FAF1 912601 eQTL 0.0239 0.0768 0.0339 0.00172 0.0 0.0407
ENSG00000266993 AL050343.1 78934 eQTL 2.19e-07 -0.275 0.0527 0.00915 0.00807 0.0407

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC -6069 0.000259 0.000249 3.55e-05 7.57e-05 3.15e-05 9.54e-05 0.000219 2.32e-05 0.000184 6.67e-05 0.000214 8.99e-05 0.00031 8.29e-05 3.66e-05 0.00014 0.000101 0.000127 4.87e-05 4.34e-05 7.49e-05 0.000192 0.000206 5.87e-05 0.000248 4.96e-05 8.41e-05 6.66e-05 0.000192 0.000111 0.000141 9.84e-06 1.41e-05 4.77e-05 4.56e-05 2.9e-05 1.44e-05 1.38e-05 2.93e-05 1.32e-05 1.01e-05 0.000286 2.89e-05 1.1e-06 1.63e-05 2.3e-05 2.01e-05 8.78e-06 5.61e-06
ENSG00000154222 CC2D1B -493325 1.31e-06 6.81e-07 2.74e-07 6.42e-07 1.02e-07 4.35e-07 1.28e-06 5.82e-08 6.71e-07 2.72e-07 3.92e-07 2.11e-07 2e-06 1.23e-07 4.03e-07 2.89e-07 2.25e-07 5.33e-07 3.43e-07 2.65e-07 2.86e-07 3.95e-07 5.41e-07 1.03e-07 8.33e-07 2.64e-07 2.43e-07 2.69e-07 7.69e-07 5.99e-07 3.68e-07 3.6e-08 4.76e-08 5.71e-07 3.84e-07 7.56e-08 1.97e-07 1.38e-07 1.94e-07 3.03e-08 5.24e-08 1.56e-06 4.02e-07 1.1e-08 4.36e-08 6.87e-08 1.27e-07 3.86e-09 4.98e-08
ENSG00000232846 \N 163806 5.13e-06 4.23e-06 1.67e-06 3.21e-06 1.18e-06 1.72e-06 4.13e-06 4.99e-07 4.2e-06 2.01e-06 3.49e-06 1.44e-06 9.37e-06 1.35e-06 1.01e-06 2e-06 1.84e-06 2.9e-06 1.33e-06 1.4e-06 2.93e-06 3.37e-06 4.21e-06 1.57e-06 4.66e-06 1.74e-06 1.27e-06 1.72e-06 4.45e-06 3.81e-06 1.95e-06 4.72e-07 5.29e-07 3.24e-06 2.05e-06 1.18e-06 9.76e-07 5.44e-07 1.37e-06 1.01e-06 1.52e-07 8.73e-06 1.52e-06 1.49e-07 3.52e-07 9.68e-07 7.28e-07 2.24e-07 4.23e-07
ENSG00000266993 AL050343.1 78934 9.98e-06 9.35e-06 3.46e-06 6.9e-06 2.41e-06 4.19e-06 1.01e-05 1.12e-06 8.69e-06 4.8e-06 1.06e-05 3.27e-06 1.93e-05 3.95e-06 4.18e-06 5.06e-06 7.74e-06 5.6e-06 2.67e-06 3.14e-06 5.18e-06 7.45e-06 8.72e-06 3.27e-06 1.22e-05 4.44e-06 2.34e-06 3.74e-06 1.15e-05 7.9e-06 5.07e-06 1.07e-06 7.54e-07 6.69e-06 5.01e-06 2.77e-06 1.77e-06 2.06e-06 3.61e-06 2.18e-06 9.34e-07 2.39e-05 2.75e-06 2.96e-07 8.13e-07 2.61e-06 1.38e-06 8.24e-07 7.39e-07