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Genes within 1Mb (chr1:51860996:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC -17941 sc-eQTL 6.33e-02 -0.432 0.231 0.051 B_Activated L2
ENSG00000085832 EPS15 341730 sc-eQTL 4.60e-01 0.164 0.221 0.051 B_Activated L2
ENSG00000116157 GPX7 -741375 sc-eQTL 1.01e-01 0.35 0.212 0.051 B_Activated L2
ENSG00000117859 OSBPL9 283817 sc-eQTL 2.54e-01 0.263 0.229 0.051 B_Activated L2
ENSG00000117862 TXNDC12 -195175 sc-eQTL 6.34e-01 0.104 0.219 0.051 B_Activated L2
ENSG00000123080 CDKN2C 900251 sc-eQTL 7.38e-01 0.0562 0.168 0.051 B_Activated L2
ENSG00000123091 RNF11 624723 sc-eQTL 1.01e-01 -0.34 0.206 0.051 B_Activated L2
ENSG00000134717 BTF3L4 -195203 sc-eQTL 5.77e-01 0.129 0.231 0.051 B_Activated L2
ENSG00000134744 TUT4 -692491 sc-eQTL 8.78e-01 0.033 0.215 0.051 B_Activated L2
ENSG00000134748 PRPF38A -543606 sc-eQTL 1.98e-01 -0.28 0.216 0.051 B_Activated L2
ENSG00000154222 CC2D1B -505197 sc-eQTL 8.35e-01 -0.0443 0.212 0.051 B_Activated L2
ENSG00000162377 COA7 -837351 sc-eQTL 7.50e-01 0.0577 0.181 0.051 B_Activated L2
ENSG00000162378 ZYG11B -865457 sc-eQTL 5.29e-01 0.14 0.221 0.051 B_Activated L2
ENSG00000182183 SHISAL2A -772172 sc-eQTL 2.74e-01 0.213 0.194 0.051 B_Activated L2
ENSG00000185104 FAF1 900729 sc-eQTL 5.43e-01 -0.127 0.209 0.051 B_Activated L2
ENSG00000198841 KTI12 -172814 sc-eQTL 7.74e-01 0.0534 0.186 0.051 B_Activated L2
ENSG00000078618 NRDC -17941 sc-eQTL 8.96e-02 -0.359 0.21 0.05 CD4_CTL L2
ENSG00000085832 EPS15 341730 sc-eQTL 4.56e-01 -0.14 0.188 0.05 CD4_CTL L2
ENSG00000116157 GPX7 -741375 sc-eQTL 9.16e-01 0.0219 0.208 0.05 CD4_CTL L2
ENSG00000117859 OSBPL9 283817 sc-eQTL 2.56e-01 -0.248 0.218 0.05 CD4_CTL L2
ENSG00000117862 TXNDC12 -195175 sc-eQTL 2.25e-01 0.248 0.204 0.05 CD4_CTL L2
ENSG00000123080 CDKN2C 900251 sc-eQTL 1.20e-01 -0.325 0.209 0.05 CD4_CTL L2
ENSG00000123091 RNF11 624723 sc-eQTL 4.90e-01 0.137 0.198 0.05 CD4_CTL L2
ENSG00000134717 BTF3L4 -195203 sc-eQTL 2.03e-01 0.264 0.207 0.05 CD4_CTL L2
ENSG00000134744 TUT4 -692491 sc-eQTL 3.71e-01 -0.175 0.196 0.05 CD4_CTL L2
ENSG00000134748 PRPF38A -543606 sc-eQTL 4.53e-02 0.416 0.206 0.05 CD4_CTL L2
ENSG00000154222 CC2D1B -505197 sc-eQTL 8.44e-01 0.041 0.208 0.05 CD4_CTL L2
ENSG00000157077 ZFYVE9 -281098 sc-eQTL 4.93e-01 -0.131 0.191 0.05 CD4_CTL L2
ENSG00000162378 ZYG11B -865457 sc-eQTL 2.54e-01 0.234 0.204 0.05 CD4_CTL L2
ENSG00000182183 SHISAL2A -772172 sc-eQTL 4.52e-01 0.14 0.185 0.05 CD4_CTL L2
ENSG00000185104 FAF1 900729 sc-eQTL 5.20e-01 -0.114 0.177 0.05 CD4_CTL L2
ENSG00000198841 KTI12 -172814 sc-eQTL 1.88e-01 -0.264 0.2 0.05 CD4_CTL L2
ENSG00000078618 NRDC -17941 sc-eQTL 8.52e-01 -0.0384 0.206 0.051 CD8_TCM L2
ENSG00000085832 EPS15 341730 sc-eQTL 6.11e-01 -0.104 0.203 0.051 CD8_TCM L2
ENSG00000116157 GPX7 -741375 sc-eQTL 1.05e-02 0.554 0.214 0.051 CD8_TCM L2
ENSG00000117859 OSBPL9 283817 sc-eQTL 9.63e-01 0.0102 0.221 0.051 CD8_TCM L2
ENSG00000117862 TXNDC12 -195175 sc-eQTL 8.02e-01 0.0502 0.2 0.051 CD8_TCM L2
ENSG00000123080 CDKN2C 900251 sc-eQTL 2.14e-01 -0.244 0.196 0.051 CD8_TCM L2
ENSG00000123091 RNF11 624723 sc-eQTL 1.65e-01 0.285 0.204 0.051 CD8_TCM L2
ENSG00000134717 BTF3L4 -195203 sc-eQTL 4.59e-01 0.151 0.204 0.051 CD8_TCM L2
ENSG00000134744 TUT4 -692491 sc-eQTL 5.37e-01 -0.124 0.2 0.051 CD8_TCM L2
ENSG00000134748 PRPF38A -543606 sc-eQTL 8.73e-01 0.0319 0.199 0.051 CD8_TCM L2
ENSG00000154222 CC2D1B -505197 sc-eQTL 6.26e-01 0.0975 0.2 0.051 CD8_TCM L2
ENSG00000157077 ZFYVE9 -281098 sc-eQTL 4.63e-01 0.15 0.204 0.051 CD8_TCM L2
ENSG00000162378 ZYG11B -865457 sc-eQTL 3.52e-01 -0.186 0.2 0.051 CD8_TCM L2
ENSG00000182183 SHISAL2A -772172 sc-eQTL 4.02e-01 0.165 0.197 0.051 CD8_TCM L2
ENSG00000185104 FAF1 900729 sc-eQTL 2.67e-01 0.204 0.184 0.051 CD8_TCM L2
ENSG00000198841 KTI12 -172814 sc-eQTL 5.38e-01 0.129 0.21 0.051 CD8_TCM L2
ENSG00000078618 NRDC -17941 sc-eQTL 2.88e-01 -0.206 0.193 0.054 cDC L2
ENSG00000085831 TTC39A 515880 sc-eQTL 3.80e-01 -0.0555 0.0631 0.054 cDC L2
ENSG00000085832 EPS15 341730 sc-eQTL 1.74e-01 -0.293 0.215 0.054 cDC L2
ENSG00000116157 GPX7 -741375 sc-eQTL 1.48e-01 0.258 0.178 0.054 cDC L2
ENSG00000117859 OSBPL9 283817 sc-eQTL 4.83e-01 0.139 0.198 0.054 cDC L2
ENSG00000117862 TXNDC12 -195175 sc-eQTL 2.66e-01 0.21 0.188 0.054 cDC L2
ENSG00000123080 CDKN2C 900251 sc-eQTL 9.91e-01 -0.00234 0.204 0.054 cDC L2
ENSG00000123091 RNF11 624723 sc-eQTL 9.57e-01 -0.0115 0.211 0.054 cDC L2
ENSG00000134717 BTF3L4 -195203 sc-eQTL 9.27e-01 0.0175 0.191 0.054 cDC L2
ENSG00000134744 TUT4 -692491 sc-eQTL 8.83e-01 0.0312 0.212 0.054 cDC L2
ENSG00000134748 PRPF38A -543606 sc-eQTL 7.07e-01 -0.0736 0.195 0.054 cDC L2
ENSG00000154222 CC2D1B -505197 sc-eQTL 2.16e-01 0.263 0.212 0.054 cDC L2
ENSG00000162377 COA7 -837351 sc-eQTL 8.25e-01 0.0446 0.202 0.054 cDC L2
ENSG00000162378 ZYG11B -865457 sc-eQTL 7.90e-01 0.0567 0.212 0.054 cDC L2
ENSG00000185104 FAF1 900729 sc-eQTL 3.76e-02 -0.394 0.188 0.054 cDC L2
ENSG00000198841 KTI12 -172814 sc-eQTL 1.38e-01 0.296 0.199 0.054 cDC L2
ENSG00000078618 NRDC -17941 sc-eQTL 1.92e-01 -0.224 0.171 0.059 pDC L2
ENSG00000085831 TTC39A 515880 sc-eQTL 7.43e-01 0.0545 0.166 0.059 pDC L2
ENSG00000085832 EPS15 341730 sc-eQTL 7.76e-01 -0.0607 0.213 0.059 pDC L2
ENSG00000116157 GPX7 -741375 sc-eQTL 5.91e-01 -0.0864 0.16 0.059 pDC L2
ENSG00000117859 OSBPL9 283817 sc-eQTL 3.69e-01 -0.186 0.207 0.059 pDC L2
ENSG00000117862 TXNDC12 -195175 sc-eQTL 5.87e-01 -0.113 0.207 0.059 pDC L2
ENSG00000123080 CDKN2C 900251 sc-eQTL 9.53e-01 0.0105 0.177 0.059 pDC L2
ENSG00000123091 RNF11 624723 sc-eQTL 5.36e-01 0.0953 0.153 0.059 pDC L2
ENSG00000134717 BTF3L4 -195203 sc-eQTL 4.25e-01 -0.162 0.203 0.059 pDC L2
ENSG00000134744 TUT4 -692491 sc-eQTL 6.68e-01 -0.0742 0.173 0.059 pDC L2
ENSG00000134748 PRPF38A -543606 sc-eQTL 6.31e-01 0.107 0.222 0.059 pDC L2
ENSG00000154222 CC2D1B -505197 sc-eQTL 5.44e-01 -0.128 0.211 0.059 pDC L2
ENSG00000162377 COA7 -837351 sc-eQTL 4.05e-01 0.143 0.171 0.059 pDC L2
ENSG00000162378 ZYG11B -865457 sc-eQTL 8.94e-01 0.0276 0.206 0.059 pDC L2
ENSG00000185104 FAF1 900729 sc-eQTL 1.92e-01 0.275 0.21 0.059 pDC L2
ENSG00000198841 KTI12 -172814 sc-eQTL 2.85e-01 0.21 0.196 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC -17941 eQTL 2.39e-10 -0.12 0.0187 0.00193 0.0283 0.0407
ENSG00000085831 TTC39A 515880 eQTL 0.0303 -0.128 0.0592 0.00156 0.0 0.0407
ENSG00000116157 GPX7 -741375 eQTL 0.141 0.09 0.061 0.00119 0.0 0.0407
ENSG00000134717 BTF3L4 -195203 eQTL 1.40e-02 -0.0801 0.0325 0.00198 0.0 0.0407
ENSG00000134748 PRPF38A -543606 eQTL 3.01e-02 0.1 0.0462 0.0014 0.0 0.0407
ENSG00000154222 CC2D1B -505197 eQTL 1.92e-09 0.255 0.0421 0.0 0.0 0.0407
ENSG00000182183 SHISAL2A -772172 eQTL 0.0127 0.104 0.0417 0.0 0.0 0.0407
ENSG00000185104 FAF1 900729 eQTL 0.0231 0.0768 0.0338 0.00175 0.0 0.0407
ENSG00000266993 AL050343.1 67062 eQTL 1.76e-07 -0.276 0.0524 0.0115 0.0102 0.0407

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC -17941 2.2e-05 2.3e-05 5.07e-06 1.3e-05 4.43e-06 1.12e-05 3.16e-05 3.72e-06 2.13e-05 1.12e-05 2.82e-05 1.13e-05 3.78e-05 9.68e-06 5.66e-06 1.32e-05 1.22e-05 1.98e-05 6.74e-06 6.02e-06 1.16e-05 2.36e-05 2.31e-05 8.13e-06 3.32e-05 6.27e-06 9.71e-06 9.35e-06 2.39e-05 2.37e-05 1.36e-05 1.58e-06 2.41e-06 6.71e-06 9.27e-06 5.22e-06 3.09e-06 3.11e-06 4.35e-06 3.22e-06 1.76e-06 2.87e-05 2.83e-06 3.99e-07 2.23e-06 3.32e-06 3.67e-06 1.45e-06 1.57e-06
ENSG00000116157 GPX7 -741375 3.21e-07 1.53e-07 6.45e-08 2.09e-07 1.07e-07 8.33e-08 2.1e-07 5.56e-08 1.59e-07 9.35e-08 1.66e-07 1.31e-07 2.13e-07 8.13e-08 5.69e-08 9.11e-08 4.31e-08 1.8e-07 7.29e-08 6.16e-08 1.18e-07 1.47e-07 1.62e-07 3.51e-08 2.02e-07 1.31e-07 1.23e-07 1.17e-07 1.32e-07 1.06e-07 1.21e-07 4.93e-08 3.74e-08 9.78e-08 3.07e-08 3.24e-08 4.41e-08 8.2e-08 6.3e-08 6.19e-08 5.36e-08 1.59e-07 4.17e-08 1.44e-08 4.91e-08 1.19e-08 8.98e-08 2.02e-09 4.83e-08
ENSG00000154222 CC2D1B -505197 8.25e-07 4e-07 1.11e-07 3.19e-07 9.33e-08 1.71e-07 4.68e-07 1.01e-07 3.32e-07 2.14e-07 4.97e-07 3.48e-07 6e-07 1.07e-07 1.57e-07 2.18e-07 2.07e-07 3.67e-07 1.93e-07 1.41e-07 1.89e-07 3.1e-07 3.02e-07 1.25e-07 6.02e-07 2.4e-07 2.58e-07 2.44e-07 3e-07 3.8e-07 2.43e-07 5.69e-08 4.74e-08 1.19e-07 2.35e-07 9.51e-08 1.01e-07 7.75e-08 5.62e-08 3.09e-08 8.35e-08 3.73e-07 2.71e-08 1.89e-08 1.58e-07 1.84e-08 7.25e-08 7.14e-09 6.15e-08
ENSG00000228929 \N -911652 2.77e-07 1.27e-07 5.72e-08 1.82e-07 9.8e-08 9.9e-08 1.61e-07 5.48e-08 1.45e-07 5.67e-08 1.57e-07 1.05e-07 1.53e-07 7.13e-08 6.18e-08 7.23e-08 4.09e-08 1.4e-07 6.32e-08 4.89e-08 1.22e-07 1.24e-07 1.45e-07 2.91e-08 1.55e-07 1.25e-07 1.18e-07 9.92e-08 1.23e-07 1.07e-07 1.06e-07 3.99e-08 3.43e-08 8.11e-08 6.67e-08 3.05e-08 5.37e-08 8.63e-08 6.37e-08 3.82e-08 5.3e-08 1.4e-07 5.21e-08 1.88e-08 3.29e-08 1.87e-08 1.21e-07 1.88e-09 4.81e-08
ENSG00000266993 AL050343.1 67062 7.78e-06 9.3e-06 1.35e-06 4.36e-06 2.36e-06 4.02e-06 9.57e-06 1.8e-06 7.74e-06 4.75e-06 1.06e-05 4.99e-06 1.22e-05 4e-06 2.13e-06 6.29e-06 3.99e-06 6.32e-06 2.55e-06 2.88e-06 4.66e-06 7.99e-06 6.81e-06 3.21e-06 1.18e-05 3.35e-06 4.63e-06 3.24e-06 8.25e-06 7.8e-06 4.51e-06 9.42e-07 1.24e-06 3.03e-06 3.3e-06 2.53e-06 1.79e-06 1.89e-06 1.57e-06 1e-06 1.04e-06 1.07e-05 1.3e-06 1.97e-07 7.94e-07 1.62e-06 1.25e-06 7.8e-07 4.81e-07