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Genes within 1Mb (chr1:51856457:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC -22480 sc-eQTL 6.33e-02 -0.432 0.231 0.051 B_Activated L2
ENSG00000085832 EPS15 337191 sc-eQTL 4.60e-01 0.164 0.221 0.051 B_Activated L2
ENSG00000116157 GPX7 -745914 sc-eQTL 1.01e-01 0.35 0.212 0.051 B_Activated L2
ENSG00000117859 OSBPL9 279278 sc-eQTL 2.54e-01 0.263 0.229 0.051 B_Activated L2
ENSG00000117862 TXNDC12 -199714 sc-eQTL 6.34e-01 0.104 0.219 0.051 B_Activated L2
ENSG00000123080 CDKN2C 895712 sc-eQTL 7.38e-01 0.0562 0.168 0.051 B_Activated L2
ENSG00000123091 RNF11 620184 sc-eQTL 1.01e-01 -0.34 0.206 0.051 B_Activated L2
ENSG00000134717 BTF3L4 -199742 sc-eQTL 5.77e-01 0.129 0.231 0.051 B_Activated L2
ENSG00000134744 TUT4 -697030 sc-eQTL 8.78e-01 0.033 0.215 0.051 B_Activated L2
ENSG00000134748 PRPF38A -548145 sc-eQTL 1.98e-01 -0.28 0.216 0.051 B_Activated L2
ENSG00000154222 CC2D1B -509736 sc-eQTL 8.35e-01 -0.0443 0.212 0.051 B_Activated L2
ENSG00000162377 COA7 -841890 sc-eQTL 7.50e-01 0.0577 0.181 0.051 B_Activated L2
ENSG00000162378 ZYG11B -869996 sc-eQTL 5.29e-01 0.14 0.221 0.051 B_Activated L2
ENSG00000182183 SHISAL2A -776711 sc-eQTL 2.74e-01 0.213 0.194 0.051 B_Activated L2
ENSG00000185104 FAF1 896190 sc-eQTL 5.43e-01 -0.127 0.209 0.051 B_Activated L2
ENSG00000198841 KTI12 -177353 sc-eQTL 7.74e-01 0.0534 0.186 0.051 B_Activated L2
ENSG00000078618 NRDC -22480 sc-eQTL 8.96e-02 -0.359 0.21 0.05 CD4_CTL L2
ENSG00000085832 EPS15 337191 sc-eQTL 4.56e-01 -0.14 0.188 0.05 CD4_CTL L2
ENSG00000116157 GPX7 -745914 sc-eQTL 9.16e-01 0.0219 0.208 0.05 CD4_CTL L2
ENSG00000117859 OSBPL9 279278 sc-eQTL 2.56e-01 -0.248 0.218 0.05 CD4_CTL L2
ENSG00000117862 TXNDC12 -199714 sc-eQTL 2.25e-01 0.248 0.204 0.05 CD4_CTL L2
ENSG00000123080 CDKN2C 895712 sc-eQTL 1.20e-01 -0.325 0.209 0.05 CD4_CTL L2
ENSG00000123091 RNF11 620184 sc-eQTL 4.90e-01 0.137 0.198 0.05 CD4_CTL L2
ENSG00000134717 BTF3L4 -199742 sc-eQTL 2.03e-01 0.264 0.207 0.05 CD4_CTL L2
ENSG00000134744 TUT4 -697030 sc-eQTL 3.71e-01 -0.175 0.196 0.05 CD4_CTL L2
ENSG00000134748 PRPF38A -548145 sc-eQTL 4.53e-02 0.416 0.206 0.05 CD4_CTL L2
ENSG00000154222 CC2D1B -509736 sc-eQTL 8.44e-01 0.041 0.208 0.05 CD4_CTL L2
ENSG00000157077 ZFYVE9 -285637 sc-eQTL 4.93e-01 -0.131 0.191 0.05 CD4_CTL L2
ENSG00000162378 ZYG11B -869996 sc-eQTL 2.54e-01 0.234 0.204 0.05 CD4_CTL L2
ENSG00000182183 SHISAL2A -776711 sc-eQTL 4.52e-01 0.14 0.185 0.05 CD4_CTL L2
ENSG00000185104 FAF1 896190 sc-eQTL 5.20e-01 -0.114 0.177 0.05 CD4_CTL L2
ENSG00000198841 KTI12 -177353 sc-eQTL 1.88e-01 -0.264 0.2 0.05 CD4_CTL L2
ENSG00000078618 NRDC -22480 sc-eQTL 8.52e-01 -0.0384 0.206 0.051 CD8_TCM L2
ENSG00000085832 EPS15 337191 sc-eQTL 6.11e-01 -0.104 0.203 0.051 CD8_TCM L2
ENSG00000116157 GPX7 -745914 sc-eQTL 1.05e-02 0.554 0.214 0.051 CD8_TCM L2
ENSG00000117859 OSBPL9 279278 sc-eQTL 9.63e-01 0.0102 0.221 0.051 CD8_TCM L2
ENSG00000117862 TXNDC12 -199714 sc-eQTL 8.02e-01 0.0502 0.2 0.051 CD8_TCM L2
ENSG00000123080 CDKN2C 895712 sc-eQTL 2.14e-01 -0.244 0.196 0.051 CD8_TCM L2
ENSG00000123091 RNF11 620184 sc-eQTL 1.65e-01 0.285 0.204 0.051 CD8_TCM L2
ENSG00000134717 BTF3L4 -199742 sc-eQTL 4.59e-01 0.151 0.204 0.051 CD8_TCM L2
ENSG00000134744 TUT4 -697030 sc-eQTL 5.37e-01 -0.124 0.2 0.051 CD8_TCM L2
ENSG00000134748 PRPF38A -548145 sc-eQTL 8.73e-01 0.0319 0.199 0.051 CD8_TCM L2
ENSG00000154222 CC2D1B -509736 sc-eQTL 6.26e-01 0.0975 0.2 0.051 CD8_TCM L2
ENSG00000157077 ZFYVE9 -285637 sc-eQTL 4.63e-01 0.15 0.204 0.051 CD8_TCM L2
ENSG00000162378 ZYG11B -869996 sc-eQTL 3.52e-01 -0.186 0.2 0.051 CD8_TCM L2
ENSG00000182183 SHISAL2A -776711 sc-eQTL 4.02e-01 0.165 0.197 0.051 CD8_TCM L2
ENSG00000185104 FAF1 896190 sc-eQTL 2.67e-01 0.204 0.184 0.051 CD8_TCM L2
ENSG00000198841 KTI12 -177353 sc-eQTL 5.38e-01 0.129 0.21 0.051 CD8_TCM L2
ENSG00000078618 NRDC -22480 sc-eQTL 2.88e-01 -0.206 0.193 0.054 cDC L2
ENSG00000085831 TTC39A 511341 sc-eQTL 3.80e-01 -0.0555 0.0631 0.054 cDC L2
ENSG00000085832 EPS15 337191 sc-eQTL 1.74e-01 -0.293 0.215 0.054 cDC L2
ENSG00000116157 GPX7 -745914 sc-eQTL 1.48e-01 0.258 0.178 0.054 cDC L2
ENSG00000117859 OSBPL9 279278 sc-eQTL 4.83e-01 0.139 0.198 0.054 cDC L2
ENSG00000117862 TXNDC12 -199714 sc-eQTL 2.66e-01 0.21 0.188 0.054 cDC L2
ENSG00000123080 CDKN2C 895712 sc-eQTL 9.91e-01 -0.00234 0.204 0.054 cDC L2
ENSG00000123091 RNF11 620184 sc-eQTL 9.57e-01 -0.0115 0.211 0.054 cDC L2
ENSG00000134717 BTF3L4 -199742 sc-eQTL 9.27e-01 0.0175 0.191 0.054 cDC L2
ENSG00000134744 TUT4 -697030 sc-eQTL 8.83e-01 0.0312 0.212 0.054 cDC L2
ENSG00000134748 PRPF38A -548145 sc-eQTL 7.07e-01 -0.0736 0.195 0.054 cDC L2
ENSG00000154222 CC2D1B -509736 sc-eQTL 2.16e-01 0.263 0.212 0.054 cDC L2
ENSG00000162377 COA7 -841890 sc-eQTL 8.25e-01 0.0446 0.202 0.054 cDC L2
ENSG00000162378 ZYG11B -869996 sc-eQTL 7.90e-01 0.0567 0.212 0.054 cDC L2
ENSG00000185104 FAF1 896190 sc-eQTL 3.76e-02 -0.394 0.188 0.054 cDC L2
ENSG00000198841 KTI12 -177353 sc-eQTL 1.38e-01 0.296 0.199 0.054 cDC L2
ENSG00000078618 NRDC -22480 sc-eQTL 1.92e-01 -0.224 0.171 0.059 pDC L2
ENSG00000085831 TTC39A 511341 sc-eQTL 7.43e-01 0.0545 0.166 0.059 pDC L2
ENSG00000085832 EPS15 337191 sc-eQTL 7.76e-01 -0.0607 0.213 0.059 pDC L2
ENSG00000116157 GPX7 -745914 sc-eQTL 5.91e-01 -0.0864 0.16 0.059 pDC L2
ENSG00000117859 OSBPL9 279278 sc-eQTL 3.69e-01 -0.186 0.207 0.059 pDC L2
ENSG00000117862 TXNDC12 -199714 sc-eQTL 5.87e-01 -0.113 0.207 0.059 pDC L2
ENSG00000123080 CDKN2C 895712 sc-eQTL 9.53e-01 0.0105 0.177 0.059 pDC L2
ENSG00000123091 RNF11 620184 sc-eQTL 5.36e-01 0.0953 0.153 0.059 pDC L2
ENSG00000134717 BTF3L4 -199742 sc-eQTL 4.25e-01 -0.162 0.203 0.059 pDC L2
ENSG00000134744 TUT4 -697030 sc-eQTL 6.68e-01 -0.0742 0.173 0.059 pDC L2
ENSG00000134748 PRPF38A -548145 sc-eQTL 6.31e-01 0.107 0.222 0.059 pDC L2
ENSG00000154222 CC2D1B -509736 sc-eQTL 5.44e-01 -0.128 0.211 0.059 pDC L2
ENSG00000162377 COA7 -841890 sc-eQTL 4.05e-01 0.143 0.171 0.059 pDC L2
ENSG00000162378 ZYG11B -869996 sc-eQTL 8.94e-01 0.0276 0.206 0.059 pDC L2
ENSG00000185104 FAF1 896190 sc-eQTL 1.92e-01 0.275 0.21 0.059 pDC L2
ENSG00000198841 KTI12 -177353 sc-eQTL 2.85e-01 0.21 0.196 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC -22480 eQTL 2.39e-10 -0.12 0.0187 0.00193 0.0281 0.0407
ENSG00000085831 TTC39A 511341 eQTL 0.0303 -0.128 0.0592 0.00156 0.0 0.0407
ENSG00000116157 GPX7 -745914 eQTL 0.141 0.09 0.061 0.00119 0.0 0.0407
ENSG00000134717 BTF3L4 -199742 eQTL 1.40e-02 -0.0801 0.0325 0.00198 0.0 0.0407
ENSG00000134748 PRPF38A -548145 eQTL 3.01e-02 0.1 0.0462 0.0014 0.0 0.0407
ENSG00000154222 CC2D1B -509736 eQTL 1.92e-09 0.255 0.0421 0.0 0.0 0.0407
ENSG00000182183 SHISAL2A -776711 eQTL 0.0127 0.104 0.0417 0.0 0.0 0.0407
ENSG00000185104 FAF1 896190 eQTL 0.0231 0.0768 0.0338 0.00175 0.0 0.0407
ENSG00000266993 AL050343.1 62523 eQTL 1.76e-07 -0.276 0.0524 0.0115 0.0102 0.0407

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC -22480 1.8e-05 2.11e-05 3.38e-06 1.08e-05 4e-06 7.99e-06 2.88e-05 3.5e-06 1.81e-05 9.45e-06 2.33e-05 1.06e-05 3.17e-05 1.06e-05 4.91e-06 1.23e-05 1.11e-05 1.64e-05 5.87e-06 4.27e-06 8.88e-06 2.08e-05 1.95e-05 5.62e-06 3.7e-05 5.37e-06 8.89e-06 8.12e-06 1.91e-05 1.63e-05 1.28e-05 1.41e-06 1.42e-06 4.09e-06 9.01e-06 3.76e-06 1.79e-06 2.73e-06 2.59e-06 1.88e-06 1.67e-06 2.44e-05 2.63e-06 4.02e-07 2.05e-06 2.61e-06 3.11e-06 1.23e-06 1.06e-06
ENSG00000116157 GPX7 -745914 2.67e-07 1.76e-07 6.57e-08 2.96e-07 1.06e-07 9.31e-08 2.63e-07 5.75e-08 1.66e-07 6.75e-08 2.07e-07 1.72e-07 2.24e-07 9.48e-08 6.93e-08 9.11e-08 5.42e-08 1.77e-07 9.19e-08 6.29e-08 1.27e-07 1.7e-07 1.64e-07 4.17e-08 2.86e-07 1.39e-07 1.33e-07 1.46e-07 1.31e-07 1.8e-07 1.35e-07 3.93e-08 3.8e-08 9.5e-08 1.16e-07 3.57e-08 1.1e-07 7.86e-08 4.99e-08 8.34e-08 8.15e-08 1.55e-07 4.12e-08 1.14e-07 3.66e-08 1.01e-08 1e-07 0.0 4.81e-08
ENSG00000154222 CC2D1B -509736 3.92e-07 6.07e-07 1.48e-07 3.43e-07 1.09e-07 2.54e-07 5.76e-07 8.17e-08 3.62e-07 1.78e-07 8.28e-07 4.94e-07 6.27e-07 2.19e-07 2.77e-07 2.1e-07 3.93e-07 3.79e-07 3.06e-07 1.9e-07 2.01e-07 3.87e-07 3.11e-07 1.78e-07 1.16e-06 2.39e-07 3.68e-07 3.24e-07 2.76e-07 7.39e-07 3.66e-07 8.48e-08 5.78e-08 1.57e-07 3.8e-07 1.46e-07 3.79e-07 1.55e-07 7.5e-08 1.61e-08 3e-07 5.87e-07 6.65e-08 1.96e-07 1.34e-07 1.5e-08 9.98e-08 3.05e-08 4.91e-08
ENSG00000228929 \N -916191 2.67e-07 1.36e-07 5.72e-08 2.36e-07 1.03e-07 8.21e-08 1.81e-07 5.4e-08 1.45e-07 4.94e-08 1.59e-07 1.2e-07 1.59e-07 8.44e-08 5.69e-08 7.23e-08 4.24e-08 1.4e-07 7.39e-08 5.04e-08 1.25e-07 1.26e-07 1.44e-07 2.87e-08 1.98e-07 1.26e-07 1.17e-07 1.04e-07 1.16e-07 1.06e-07 1.06e-07 3.65e-08 3.51e-08 8.7e-08 3.97e-08 3.07e-08 5.54e-08 6.11e-08 6.62e-08 5.35e-08 4.51e-08 1.46e-07 2.89e-08 3.39e-08 3.2e-08 1.55e-08 1.21e-07 1.95e-09 5.04e-08
ENSG00000266993 AL050343.1 62523 8.53e-06 1.24e-05 1.76e-06 6.46e-06 2.32e-06 4.26e-06 1.19e-05 2.18e-06 9.93e-06 5.34e-06 1.36e-05 6.61e-06 1.53e-05 5.36e-06 2.73e-06 7.21e-06 6.42e-06 7.71e-06 2.97e-06 2.83e-06 5.55e-06 1.06e-05 9.78e-06 3.31e-06 2.21e-05 3.75e-06 6.97e-06 4.8e-06 1.02e-05 9.23e-06 6.75e-06 9.92e-07 1.26e-06 2.85e-06 5.48e-06 2.49e-06 1.78e-06 1.86e-06 1.62e-06 9.95e-07 9.75e-07 1.35e-05 1.63e-06 3.18e-07 9.54e-07 1.82e-06 1.78e-06 7.04e-07 4.03e-07