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Genes within 1Mb (chr1:51850430:AT:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC -28507 sc-eQTL 6.33e-02 -0.432 0.231 0.051 B_Activated L2
ENSG00000085832 EPS15 331164 sc-eQTL 4.60e-01 0.164 0.221 0.051 B_Activated L2
ENSG00000116157 GPX7 -751941 sc-eQTL 1.01e-01 0.35 0.212 0.051 B_Activated L2
ENSG00000117859 OSBPL9 273251 sc-eQTL 2.54e-01 0.263 0.229 0.051 B_Activated L2
ENSG00000117862 TXNDC12 -205741 sc-eQTL 6.34e-01 0.104 0.219 0.051 B_Activated L2
ENSG00000123080 CDKN2C 889685 sc-eQTL 7.38e-01 0.0562 0.168 0.051 B_Activated L2
ENSG00000123091 RNF11 614157 sc-eQTL 1.01e-01 -0.34 0.206 0.051 B_Activated L2
ENSG00000134717 BTF3L4 -205769 sc-eQTL 5.77e-01 0.129 0.231 0.051 B_Activated L2
ENSG00000134744 TUT4 -703057 sc-eQTL 8.78e-01 0.033 0.215 0.051 B_Activated L2
ENSG00000134748 PRPF38A -554172 sc-eQTL 1.98e-01 -0.28 0.216 0.051 B_Activated L2
ENSG00000154222 CC2D1B -515763 sc-eQTL 8.35e-01 -0.0443 0.212 0.051 B_Activated L2
ENSG00000162377 COA7 -847917 sc-eQTL 7.50e-01 0.0577 0.181 0.051 B_Activated L2
ENSG00000162378 ZYG11B -876023 sc-eQTL 5.29e-01 0.14 0.221 0.051 B_Activated L2
ENSG00000182183 SHISAL2A -782738 sc-eQTL 2.74e-01 0.213 0.194 0.051 B_Activated L2
ENSG00000185104 FAF1 890163 sc-eQTL 5.43e-01 -0.127 0.209 0.051 B_Activated L2
ENSG00000198841 KTI12 -183380 sc-eQTL 7.74e-01 0.0534 0.186 0.051 B_Activated L2
ENSG00000078618 NRDC -28507 sc-eQTL 8.96e-02 -0.359 0.21 0.05 CD4_CTL L2
ENSG00000085832 EPS15 331164 sc-eQTL 4.56e-01 -0.14 0.188 0.05 CD4_CTL L2
ENSG00000116157 GPX7 -751941 sc-eQTL 9.16e-01 0.0219 0.208 0.05 CD4_CTL L2
ENSG00000117859 OSBPL9 273251 sc-eQTL 2.56e-01 -0.248 0.218 0.05 CD4_CTL L2
ENSG00000117862 TXNDC12 -205741 sc-eQTL 2.25e-01 0.248 0.204 0.05 CD4_CTL L2
ENSG00000123080 CDKN2C 889685 sc-eQTL 1.20e-01 -0.325 0.209 0.05 CD4_CTL L2
ENSG00000123091 RNF11 614157 sc-eQTL 4.90e-01 0.137 0.198 0.05 CD4_CTL L2
ENSG00000134717 BTF3L4 -205769 sc-eQTL 2.03e-01 0.264 0.207 0.05 CD4_CTL L2
ENSG00000134744 TUT4 -703057 sc-eQTL 3.71e-01 -0.175 0.196 0.05 CD4_CTL L2
ENSG00000134748 PRPF38A -554172 sc-eQTL 4.53e-02 0.416 0.206 0.05 CD4_CTL L2
ENSG00000154222 CC2D1B -515763 sc-eQTL 8.44e-01 0.041 0.208 0.05 CD4_CTL L2
ENSG00000157077 ZFYVE9 -291664 sc-eQTL 4.93e-01 -0.131 0.191 0.05 CD4_CTL L2
ENSG00000162378 ZYG11B -876023 sc-eQTL 2.54e-01 0.234 0.204 0.05 CD4_CTL L2
ENSG00000182183 SHISAL2A -782738 sc-eQTL 4.52e-01 0.14 0.185 0.05 CD4_CTL L2
ENSG00000185104 FAF1 890163 sc-eQTL 5.20e-01 -0.114 0.177 0.05 CD4_CTL L2
ENSG00000198841 KTI12 -183380 sc-eQTL 1.88e-01 -0.264 0.2 0.05 CD4_CTL L2
ENSG00000078618 NRDC -28507 sc-eQTL 8.52e-01 -0.0384 0.206 0.051 CD8_TCM L2
ENSG00000085832 EPS15 331164 sc-eQTL 6.11e-01 -0.104 0.203 0.051 CD8_TCM L2
ENSG00000116157 GPX7 -751941 sc-eQTL 1.05e-02 0.554 0.214 0.051 CD8_TCM L2
ENSG00000117859 OSBPL9 273251 sc-eQTL 9.63e-01 0.0102 0.221 0.051 CD8_TCM L2
ENSG00000117862 TXNDC12 -205741 sc-eQTL 8.02e-01 0.0502 0.2 0.051 CD8_TCM L2
ENSG00000123080 CDKN2C 889685 sc-eQTL 2.14e-01 -0.244 0.196 0.051 CD8_TCM L2
ENSG00000123091 RNF11 614157 sc-eQTL 1.65e-01 0.285 0.204 0.051 CD8_TCM L2
ENSG00000134717 BTF3L4 -205769 sc-eQTL 4.59e-01 0.151 0.204 0.051 CD8_TCM L2
ENSG00000134744 TUT4 -703057 sc-eQTL 5.37e-01 -0.124 0.2 0.051 CD8_TCM L2
ENSG00000134748 PRPF38A -554172 sc-eQTL 8.73e-01 0.0319 0.199 0.051 CD8_TCM L2
ENSG00000154222 CC2D1B -515763 sc-eQTL 6.26e-01 0.0975 0.2 0.051 CD8_TCM L2
ENSG00000157077 ZFYVE9 -291664 sc-eQTL 4.63e-01 0.15 0.204 0.051 CD8_TCM L2
ENSG00000162378 ZYG11B -876023 sc-eQTL 3.52e-01 -0.186 0.2 0.051 CD8_TCM L2
ENSG00000182183 SHISAL2A -782738 sc-eQTL 4.02e-01 0.165 0.197 0.051 CD8_TCM L2
ENSG00000185104 FAF1 890163 sc-eQTL 2.67e-01 0.204 0.184 0.051 CD8_TCM L2
ENSG00000198841 KTI12 -183380 sc-eQTL 5.38e-01 0.129 0.21 0.051 CD8_TCM L2
ENSG00000078618 NRDC -28507 sc-eQTL 2.88e-01 -0.206 0.193 0.054 cDC L2
ENSG00000085831 TTC39A 505314 sc-eQTL 3.80e-01 -0.0555 0.0631 0.054 cDC L2
ENSG00000085832 EPS15 331164 sc-eQTL 1.74e-01 -0.293 0.215 0.054 cDC L2
ENSG00000116157 GPX7 -751941 sc-eQTL 1.48e-01 0.258 0.178 0.054 cDC L2
ENSG00000117859 OSBPL9 273251 sc-eQTL 4.83e-01 0.139 0.198 0.054 cDC L2
ENSG00000117862 TXNDC12 -205741 sc-eQTL 2.66e-01 0.21 0.188 0.054 cDC L2
ENSG00000123080 CDKN2C 889685 sc-eQTL 9.91e-01 -0.00234 0.204 0.054 cDC L2
ENSG00000123091 RNF11 614157 sc-eQTL 9.57e-01 -0.0115 0.211 0.054 cDC L2
ENSG00000134717 BTF3L4 -205769 sc-eQTL 9.27e-01 0.0175 0.191 0.054 cDC L2
ENSG00000134744 TUT4 -703057 sc-eQTL 8.83e-01 0.0312 0.212 0.054 cDC L2
ENSG00000134748 PRPF38A -554172 sc-eQTL 7.07e-01 -0.0736 0.195 0.054 cDC L2
ENSG00000154222 CC2D1B -515763 sc-eQTL 2.16e-01 0.263 0.212 0.054 cDC L2
ENSG00000162377 COA7 -847917 sc-eQTL 8.25e-01 0.0446 0.202 0.054 cDC L2
ENSG00000162378 ZYG11B -876023 sc-eQTL 7.90e-01 0.0567 0.212 0.054 cDC L2
ENSG00000185104 FAF1 890163 sc-eQTL 3.76e-02 -0.394 0.188 0.054 cDC L2
ENSG00000198841 KTI12 -183380 sc-eQTL 1.38e-01 0.296 0.199 0.054 cDC L2
ENSG00000078618 NRDC -28507 sc-eQTL 1.92e-01 -0.224 0.171 0.059 pDC L2
ENSG00000085831 TTC39A 505314 sc-eQTL 7.43e-01 0.0545 0.166 0.059 pDC L2
ENSG00000085832 EPS15 331164 sc-eQTL 7.76e-01 -0.0607 0.213 0.059 pDC L2
ENSG00000116157 GPX7 -751941 sc-eQTL 5.91e-01 -0.0864 0.16 0.059 pDC L2
ENSG00000117859 OSBPL9 273251 sc-eQTL 3.69e-01 -0.186 0.207 0.059 pDC L2
ENSG00000117862 TXNDC12 -205741 sc-eQTL 5.87e-01 -0.113 0.207 0.059 pDC L2
ENSG00000123080 CDKN2C 889685 sc-eQTL 9.53e-01 0.0105 0.177 0.059 pDC L2
ENSG00000123091 RNF11 614157 sc-eQTL 5.36e-01 0.0953 0.153 0.059 pDC L2
ENSG00000134717 BTF3L4 -205769 sc-eQTL 4.25e-01 -0.162 0.203 0.059 pDC L2
ENSG00000134744 TUT4 -703057 sc-eQTL 6.68e-01 -0.0742 0.173 0.059 pDC L2
ENSG00000134748 PRPF38A -554172 sc-eQTL 6.31e-01 0.107 0.222 0.059 pDC L2
ENSG00000154222 CC2D1B -515763 sc-eQTL 5.44e-01 -0.128 0.211 0.059 pDC L2
ENSG00000162377 COA7 -847917 sc-eQTL 4.05e-01 0.143 0.171 0.059 pDC L2
ENSG00000162378 ZYG11B -876023 sc-eQTL 8.94e-01 0.0276 0.206 0.059 pDC L2
ENSG00000185104 FAF1 890163 sc-eQTL 1.92e-01 0.275 0.21 0.059 pDC L2
ENSG00000198841 KTI12 -183380 sc-eQTL 2.85e-01 0.21 0.196 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC -28507 eQTL 2.11e-10 -0.12 0.0187 0.00201 0.0323 0.0407
ENSG00000085831 TTC39A 505314 eQTL 0.0297 -0.129 0.0591 0.00157 0.0 0.0407
ENSG00000116157 GPX7 -751941 eQTL 0.139 0.0902 0.061 0.00117 0.0 0.0407
ENSG00000134717 BTF3L4 -205769 eQTL 1.31e-02 -0.0807 0.0325 0.00202 0.0 0.0407
ENSG00000134748 PRPF38A -554172 eQTL 3.06e-02 0.0998 0.0461 0.00139 0.0 0.0407
ENSG00000154222 CC2D1B -515763 eQTL 2.17e-09 0.254 0.0421 0.0 0.0 0.0407
ENSG00000182183 SHISAL2A -782738 eQTL 0.0129 0.104 0.0416 0.0 0.0 0.0407
ENSG00000185104 FAF1 890163 eQTL 0.0228 0.0769 0.0337 0.00175 0.0 0.0407
ENSG00000266993 AL050343.1 56496 eQTL 1.64e-07 -0.276 0.0524 0.0122 0.0109 0.0407

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC -28507 6.01e-05 4.26e-05 7.49e-06 1.62e-05 6.77e-06 1.87e-05 5.44e-05 4.99e-06 4e-05 1.69e-05 5.26e-05 2.18e-05 6.9e-05 1.65e-05 8.24e-06 2.5e-05 2.32e-05 2.91e-05 9.91e-06 7.67e-06 1.88e-05 4.53e-05 4.15e-05 1.07e-05 5.52e-05 1.04e-05 1.69e-05 1.53e-05 4.12e-05 2.64e-05 2.65e-05 1.67e-06 3.92e-06 7.83e-06 1.24e-05 6.64e-06 3.46e-06 3.47e-06 5.44e-06 3.85e-06 1.78e-06 5.56e-05 4.94e-06 3.24e-07 2.79e-06 5.22e-06 4.55e-06 1.9e-06 1.82e-06
ENSG00000116157 GPX7 -751941 2.48e-06 1.19e-06 3.66e-07 1.7e-06 3.96e-07 7.71e-07 1.53e-06 2.84e-07 1.75e-06 6.07e-07 1.86e-06 7.32e-07 2.5e-06 2.92e-07 3.95e-07 9.51e-07 8.37e-07 1.16e-06 5.59e-07 5.23e-07 7.74e-07 2.25e-06 1.76e-06 6.81e-07 2.63e-06 6.01e-07 9.29e-07 8.92e-07 1.6e-06 1.47e-06 7.1e-07 5.45e-08 5.29e-07 7.27e-07 5.52e-07 4.37e-07 3.4e-07 1.68e-07 2.94e-07 3.97e-07 2.17e-07 2.7e-06 3.99e-07 1.62e-07 1.83e-07 3.22e-07 2.24e-07 2.49e-07 6.51e-08
ENSG00000154222 CC2D1B -515763 4.36e-06 2.55e-06 8.72e-07 2.41e-06 4.58e-07 8.1e-07 2.4e-06 3.71e-07 1.89e-06 7.34e-07 2.48e-06 1.32e-06 3.2e-06 8.5e-07 9.5e-07 1.54e-06 1.04e-06 2.25e-06 1.29e-06 1.05e-06 1.12e-06 3.79e-06 3.45e-06 1.08e-06 4.08e-06 1.11e-06 1.14e-06 1.6e-06 2.17e-06 2e-06 9.97e-07 1.73e-07 7.93e-07 1.27e-06 1e-06 6.3e-07 7.4e-07 3.27e-07 5.16e-07 3.71e-07 3.53e-07 4.49e-06 6.74e-07 1.46e-07 3.22e-07 1.12e-06 3.78e-07 1.95e-07 2.87e-07
ENSG00000228929 \N -922218 1.64e-06 9.83e-07 2.77e-07 1.28e-06 2.76e-07 6.48e-07 1.22e-06 2e-07 1.52e-06 4.52e-07 1.99e-06 5.97e-07 2.16e-06 2.55e-07 5.4e-07 8.27e-07 7.7e-07 9.53e-07 7.65e-07 6.79e-07 7.54e-07 1.93e-06 1.25e-06 5.65e-07 2.36e-06 3.71e-07 7.27e-07 7.01e-07 1.31e-06 1.28e-06 5.79e-07 6.42e-08 2.88e-07 5.62e-07 5.93e-07 3.98e-07 1.43e-07 1.54e-07 1.55e-07 2.27e-07 1.09e-07 1.8e-06 4.43e-07 1.81e-07 1.67e-07 3.48e-07 2.45e-07 1.39e-07 6.36e-08
ENSG00000266993 AL050343.1 56496 4.16e-05 2.54e-05 7.01e-06 1.31e-05 4.86e-06 1.48e-05 3.74e-05 3.67e-06 2.29e-05 9.43e-06 3.02e-05 1.42e-05 3.98e-05 7.48e-06 5.99e-06 1.2e-05 1.32e-05 1.93e-05 6.64e-06 5.17e-06 1.23e-05 2.62e-05 3.33e-05 5.93e-06 3.59e-05 6.74e-06 8.09e-06 9e-06 3.09e-05 1.58e-05 1.41e-05 1.45e-06 2.02e-06 5.15e-06 9.01e-06 5.17e-06 2.29e-06 3.18e-06 3.22e-06 3.14e-06 1.21e-06 3.92e-05 4e-06 1.95e-07 1.81e-06 4.51e-06 2.8e-06 1.58e-06 2e-06