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Genes within 1Mb (chr1:51845210:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC -33727 sc-eQTL 6.33e-02 0.432 0.231 0.949 B_Activated L2
ENSG00000085832 EPS15 325944 sc-eQTL 4.60e-01 -0.164 0.221 0.949 B_Activated L2
ENSG00000116157 GPX7 -757161 sc-eQTL 1.01e-01 -0.35 0.212 0.949 B_Activated L2
ENSG00000117859 OSBPL9 268031 sc-eQTL 2.54e-01 -0.263 0.229 0.949 B_Activated L2
ENSG00000117862 TXNDC12 -210961 sc-eQTL 6.34e-01 -0.104 0.219 0.949 B_Activated L2
ENSG00000123080 CDKN2C 884465 sc-eQTL 7.38e-01 -0.0562 0.168 0.949 B_Activated L2
ENSG00000123091 RNF11 608937 sc-eQTL 1.01e-01 0.34 0.206 0.949 B_Activated L2
ENSG00000134717 BTF3L4 -210989 sc-eQTL 5.77e-01 -0.129 0.231 0.949 B_Activated L2
ENSG00000134744 TUT4 -708277 sc-eQTL 8.78e-01 -0.033 0.215 0.949 B_Activated L2
ENSG00000134748 PRPF38A -559392 sc-eQTL 1.98e-01 0.28 0.216 0.949 B_Activated L2
ENSG00000154222 CC2D1B -520983 sc-eQTL 8.35e-01 0.0443 0.212 0.949 B_Activated L2
ENSG00000162377 COA7 -853137 sc-eQTL 7.50e-01 -0.0577 0.181 0.949 B_Activated L2
ENSG00000162378 ZYG11B -881243 sc-eQTL 5.29e-01 -0.14 0.221 0.949 B_Activated L2
ENSG00000182183 SHISAL2A -787958 sc-eQTL 2.74e-01 -0.213 0.194 0.949 B_Activated L2
ENSG00000185104 FAF1 884943 sc-eQTL 5.43e-01 0.127 0.209 0.949 B_Activated L2
ENSG00000198841 KTI12 -188600 sc-eQTL 7.74e-01 -0.0534 0.186 0.949 B_Activated L2
ENSG00000078618 NRDC -33727 sc-eQTL 8.96e-02 0.359 0.21 0.95 CD4_CTL L2
ENSG00000085832 EPS15 325944 sc-eQTL 4.56e-01 0.14 0.188 0.95 CD4_CTL L2
ENSG00000116157 GPX7 -757161 sc-eQTL 9.16e-01 -0.0219 0.208 0.95 CD4_CTL L2
ENSG00000117859 OSBPL9 268031 sc-eQTL 2.56e-01 0.248 0.218 0.95 CD4_CTL L2
ENSG00000117862 TXNDC12 -210961 sc-eQTL 2.25e-01 -0.248 0.204 0.95 CD4_CTL L2
ENSG00000123080 CDKN2C 884465 sc-eQTL 1.20e-01 0.325 0.209 0.95 CD4_CTL L2
ENSG00000123091 RNF11 608937 sc-eQTL 4.90e-01 -0.137 0.198 0.95 CD4_CTL L2
ENSG00000134717 BTF3L4 -210989 sc-eQTL 2.03e-01 -0.264 0.207 0.95 CD4_CTL L2
ENSG00000134744 TUT4 -708277 sc-eQTL 3.71e-01 0.175 0.196 0.95 CD4_CTL L2
ENSG00000134748 PRPF38A -559392 sc-eQTL 4.53e-02 -0.416 0.206 0.95 CD4_CTL L2
ENSG00000154222 CC2D1B -520983 sc-eQTL 8.44e-01 -0.041 0.208 0.95 CD4_CTL L2
ENSG00000157077 ZFYVE9 -296884 sc-eQTL 4.93e-01 0.131 0.191 0.95 CD4_CTL L2
ENSG00000162378 ZYG11B -881243 sc-eQTL 2.54e-01 -0.234 0.204 0.95 CD4_CTL L2
ENSG00000182183 SHISAL2A -787958 sc-eQTL 4.52e-01 -0.14 0.185 0.95 CD4_CTL L2
ENSG00000185104 FAF1 884943 sc-eQTL 5.20e-01 0.114 0.177 0.95 CD4_CTL L2
ENSG00000198841 KTI12 -188600 sc-eQTL 1.88e-01 0.264 0.2 0.95 CD4_CTL L2
ENSG00000078618 NRDC -33727 sc-eQTL 8.52e-01 0.0384 0.206 0.949 CD8_TCM L2
ENSG00000085832 EPS15 325944 sc-eQTL 6.11e-01 0.104 0.203 0.949 CD8_TCM L2
ENSG00000116157 GPX7 -757161 sc-eQTL 1.05e-02 -0.554 0.214 0.949 CD8_TCM L2
ENSG00000117859 OSBPL9 268031 sc-eQTL 9.63e-01 -0.0102 0.221 0.949 CD8_TCM L2
ENSG00000117862 TXNDC12 -210961 sc-eQTL 8.02e-01 -0.0502 0.2 0.949 CD8_TCM L2
ENSG00000123080 CDKN2C 884465 sc-eQTL 2.14e-01 0.244 0.196 0.949 CD8_TCM L2
ENSG00000123091 RNF11 608937 sc-eQTL 1.65e-01 -0.285 0.204 0.949 CD8_TCM L2
ENSG00000134717 BTF3L4 -210989 sc-eQTL 4.59e-01 -0.151 0.204 0.949 CD8_TCM L2
ENSG00000134744 TUT4 -708277 sc-eQTL 5.37e-01 0.124 0.2 0.949 CD8_TCM L2
ENSG00000134748 PRPF38A -559392 sc-eQTL 8.73e-01 -0.0319 0.199 0.949 CD8_TCM L2
ENSG00000154222 CC2D1B -520983 sc-eQTL 6.26e-01 -0.0975 0.2 0.949 CD8_TCM L2
ENSG00000157077 ZFYVE9 -296884 sc-eQTL 4.63e-01 -0.15 0.204 0.949 CD8_TCM L2
ENSG00000162378 ZYG11B -881243 sc-eQTL 3.52e-01 0.186 0.2 0.949 CD8_TCM L2
ENSG00000182183 SHISAL2A -787958 sc-eQTL 4.02e-01 -0.165 0.197 0.949 CD8_TCM L2
ENSG00000185104 FAF1 884943 sc-eQTL 2.67e-01 -0.204 0.184 0.949 CD8_TCM L2
ENSG00000198841 KTI12 -188600 sc-eQTL 5.38e-01 -0.129 0.21 0.949 CD8_TCM L2
ENSG00000078618 NRDC -33727 sc-eQTL 2.88e-01 0.206 0.193 0.946 cDC L2
ENSG00000085831 TTC39A 500094 sc-eQTL 3.80e-01 0.0555 0.0631 0.946 cDC L2
ENSG00000085832 EPS15 325944 sc-eQTL 1.74e-01 0.293 0.215 0.946 cDC L2
ENSG00000116157 GPX7 -757161 sc-eQTL 1.48e-01 -0.258 0.178 0.946 cDC L2
ENSG00000117859 OSBPL9 268031 sc-eQTL 4.83e-01 -0.139 0.198 0.946 cDC L2
ENSG00000117862 TXNDC12 -210961 sc-eQTL 2.66e-01 -0.21 0.188 0.946 cDC L2
ENSG00000123080 CDKN2C 884465 sc-eQTL 9.91e-01 0.00234 0.204 0.946 cDC L2
ENSG00000123091 RNF11 608937 sc-eQTL 9.57e-01 0.0115 0.211 0.946 cDC L2
ENSG00000134717 BTF3L4 -210989 sc-eQTL 9.27e-01 -0.0175 0.191 0.946 cDC L2
ENSG00000134744 TUT4 -708277 sc-eQTL 8.83e-01 -0.0312 0.212 0.946 cDC L2
ENSG00000134748 PRPF38A -559392 sc-eQTL 7.07e-01 0.0736 0.195 0.946 cDC L2
ENSG00000154222 CC2D1B -520983 sc-eQTL 2.16e-01 -0.263 0.212 0.946 cDC L2
ENSG00000162377 COA7 -853137 sc-eQTL 8.25e-01 -0.0446 0.202 0.946 cDC L2
ENSG00000162378 ZYG11B -881243 sc-eQTL 7.90e-01 -0.0567 0.212 0.946 cDC L2
ENSG00000185104 FAF1 884943 sc-eQTL 3.76e-02 0.394 0.188 0.946 cDC L2
ENSG00000198841 KTI12 -188600 sc-eQTL 1.38e-01 -0.296 0.199 0.946 cDC L2
ENSG00000078618 NRDC -33727 sc-eQTL 1.92e-01 0.224 0.171 0.941 pDC L2
ENSG00000085831 TTC39A 500094 sc-eQTL 7.43e-01 -0.0545 0.166 0.941 pDC L2
ENSG00000085832 EPS15 325944 sc-eQTL 7.76e-01 0.0607 0.213 0.941 pDC L2
ENSG00000116157 GPX7 -757161 sc-eQTL 5.91e-01 0.0864 0.16 0.941 pDC L2
ENSG00000117859 OSBPL9 268031 sc-eQTL 3.69e-01 0.186 0.207 0.941 pDC L2
ENSG00000117862 TXNDC12 -210961 sc-eQTL 5.87e-01 0.113 0.207 0.941 pDC L2
ENSG00000123080 CDKN2C 884465 sc-eQTL 9.53e-01 -0.0105 0.177 0.941 pDC L2
ENSG00000123091 RNF11 608937 sc-eQTL 5.36e-01 -0.0953 0.153 0.941 pDC L2
ENSG00000134717 BTF3L4 -210989 sc-eQTL 4.25e-01 0.162 0.203 0.941 pDC L2
ENSG00000134744 TUT4 -708277 sc-eQTL 6.68e-01 0.0742 0.173 0.941 pDC L2
ENSG00000134748 PRPF38A -559392 sc-eQTL 6.31e-01 -0.107 0.222 0.941 pDC L2
ENSG00000154222 CC2D1B -520983 sc-eQTL 5.44e-01 0.128 0.211 0.941 pDC L2
ENSG00000162377 COA7 -853137 sc-eQTL 4.05e-01 -0.143 0.171 0.941 pDC L2
ENSG00000162378 ZYG11B -881243 sc-eQTL 8.94e-01 -0.0276 0.206 0.941 pDC L2
ENSG00000185104 FAF1 884943 sc-eQTL 1.92e-01 -0.275 0.21 0.941 pDC L2
ENSG00000198841 KTI12 -188600 sc-eQTL 2.85e-01 -0.21 0.196 0.941 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC -33727 eQTL 3.02e-10 0.119 0.0187 0.00203 0.0253 0.0412
ENSG00000085831 TTC39A 500094 eQTL 0.0188 0.139 0.0592 0.0018 0.0 0.0412
ENSG00000116157 GPX7 -757161 eQTL 0.127 -0.0933 0.0611 0.00108 0.0 0.0412
ENSG00000134717 BTF3L4 -210989 eQTL 8.51e-03 0.0858 0.0325 0.0024 0.00117 0.0412
ENSG00000134748 PRPF38A -559392 eQTL 3.45e-02 -0.0978 0.0462 0.0013 0.0 0.0412
ENSG00000154222 CC2D1B -520983 eQTL 9.4e-10 -0.261 0.0421 0.0 0.0 0.0412
ENSG00000182183 SHISAL2A -787958 eQTL 0.00738 -0.112 0.0417 0.0 0.0 0.0412
ENSG00000185104 FAF1 884943 eQTL 0.0247 -0.076 0.0338 0.0017 0.0 0.0412
ENSG00000266993 AL050343.1 51276 eQTL 1.73e-07 0.276 0.0525 0.0121 0.0104 0.0412

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC -33727 2.47e-05 2.73e-05 5.33e-06 1.38e-05 4.7e-06 1.27e-05 3.74e-05 3.96e-06 2.57e-05 1.33e-05 3.26e-05 1.46e-05 3.98e-05 1.14e-05 6.2e-06 1.48e-05 1.36e-05 2.19e-05 6.7e-06 6.02e-06 1.26e-05 2.73e-05 2.61e-05 8.13e-06 3.68e-05 6.95e-06 1.11e-05 1.11e-05 2.69e-05 2.19e-05 1.61e-05 1.54e-06 2.31e-06 6.48e-06 1.04e-05 5.04e-06 2.73e-06 2.96e-06 3.99e-06 2.99e-06 1.72e-06 3e-05 2.98e-06 3.6e-07 2.21e-06 3.32e-06 3.79e-06 1.49e-06 1.57e-06
ENSG00000116157 GPX7 -757161 4.21e-07 3.35e-07 6.45e-08 3.68e-07 1.11e-07 1.71e-07 4.14e-07 8.86e-08 2.53e-07 2.14e-07 6.39e-07 3.11e-07 5.54e-07 1.1e-07 1.45e-07 1.26e-07 9.3e-08 3.74e-07 2.42e-07 8.86e-08 2.01e-07 3.34e-07 2.67e-07 1.73e-07 4.11e-07 2.01e-07 1.29e-07 1.97e-07 1.54e-07 4.51e-07 2.11e-07 7.12e-08 4.74e-08 3.82e-07 3.52e-07 5.32e-08 1.23e-07 1.08e-07 7.81e-08 2.91e-07 1.16e-07 2.6e-07 1.67e-08 1.07e-08 8.68e-08 1.17e-07 9.83e-08 1.26e-08 5.02e-08
ENSG00000154222 CC2D1B -520983 1.07e-06 8.81e-07 1.29e-07 1.17e-06 1.11e-07 4.02e-07 8.36e-07 2.62e-07 7.56e-07 3.89e-07 1.4e-06 5.7e-07 1.54e-06 2.57e-07 4.05e-07 3.96e-07 5.64e-07 5.55e-07 5.26e-07 3.93e-07 4.44e-07 9.67e-07 5.82e-07 6.02e-07 1.39e-06 2.52e-07 3.16e-07 4.96e-07 4.9e-07 9.93e-07 4.54e-07 1.53e-07 1.94e-07 5.79e-07 5.41e-07 2.42e-07 5.02e-07 1.92e-07 3.93e-07 3.55e-07 3.03e-07 7.36e-07 7.6e-08 3.36e-08 1.8e-07 3.29e-07 1.77e-07 8.87e-08 1.56e-07
ENSG00000228929 \N -927438 3.07e-07 1.83e-07 5.64e-08 3.66e-07 1.05e-07 1.19e-07 2.63e-07 6.2e-08 1.75e-07 1.21e-07 2.98e-07 1.62e-07 2.94e-07 8.42e-08 6.93e-08 9.01e-08 4.63e-08 2.87e-07 1.5e-07 7.05e-08 1.59e-07 2.15e-07 1.81e-07 7.22e-08 2.37e-07 1.51e-07 1.17e-07 1.44e-07 1.32e-07 2e-07 1.39e-07 5.4e-08 4.96e-08 1.69e-07 1.83e-07 3.3e-08 9.9e-08 6.46e-08 5.28e-08 3.03e-08 4.82e-08 1.6e-07 3.08e-08 1.78e-08 3.71e-08 4.38e-08 7.52e-08 2.71e-09 6.46e-08
ENSG00000266993 AL050343.1 51276 1.6e-05 2.19e-05 4.1e-06 1.24e-05 3.44e-06 9.8e-06 2.91e-05 3.72e-06 2.08e-05 1.07e-05 2.74e-05 1.06e-05 3.48e-05 8.95e-06 5.35e-06 1.15e-05 1.05e-05 1.78e-05 5.31e-06 5.37e-06 9.59e-06 2.19e-05 2.09e-05 6.81e-06 3.02e-05 5.95e-06 8.52e-06 9e-06 2.1e-05 1.83e-05 1.29e-05 1.58e-06 1.93e-06 5.41e-06 9.11e-06 4.57e-06 2.29e-06 2.77e-06 3.35e-06 2.69e-06 1.67e-06 2.33e-05 2.63e-06 3.18e-07 2.06e-06 2.7e-06 3.43e-06 1.51e-06 1.46e-06