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Genes within 1Mb (chr1:51598886:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC -280051 sc-eQTL 8.78e-01 0.0337 0.219 0.05 CD4_CTL L2
ENSG00000085832 EPS15 79620 sc-eQTL 4.12e-01 -0.159 0.194 0.05 CD4_CTL L2
ENSG00000117859 OSBPL9 21707 sc-eQTL 4.37e-01 0.175 0.225 0.05 CD4_CTL L2
ENSG00000117862 TXNDC12 -457285 sc-eQTL 7.49e-01 -0.0679 0.211 0.05 CD4_CTL L2
ENSG00000123080 CDKN2C 638141 sc-eQTL 4.37e-01 0.168 0.216 0.05 CD4_CTL L2
ENSG00000123091 RNF11 362613 sc-eQTL 5.93e-01 -0.109 0.204 0.05 CD4_CTL L2
ENSG00000134717 BTF3L4 -457313 sc-eQTL 4.04e-02 0.437 0.212 0.05 CD4_CTL L2
ENSG00000134744 TUT4 -954601 sc-eQTL 9.06e-01 0.0238 0.202 0.05 CD4_CTL L2
ENSG00000134748 PRPF38A -805716 sc-eQTL 2.11e-01 0.269 0.214 0.05 CD4_CTL L2
ENSG00000154222 CC2D1B -767307 sc-eQTL 2.38e-01 -0.253 0.214 0.05 CD4_CTL L2
ENSG00000157077 ZFYVE9 -543208 sc-eQTL 7.17e-01 0.0715 0.197 0.05 CD4_CTL L2
ENSG00000185104 FAF1 638619 sc-eQTL 7.12e-01 0.0674 0.183 0.05 CD4_CTL L2
ENSG00000198841 KTI12 -434924 sc-eQTL 4.53e-02 0.413 0.205 0.05 CD4_CTL L2
ENSG00000078618 NRDC -280051 sc-eQTL 6.98e-01 -0.0809 0.208 0.053 CD8_TEM L2
ENSG00000085832 EPS15 79620 sc-eQTL 4.37e-01 -0.148 0.19 0.053 CD8_TEM L2
ENSG00000117859 OSBPL9 21707 sc-eQTL 9.18e-01 0.0231 0.223 0.053 CD8_TEM L2
ENSG00000117862 TXNDC12 -457285 sc-eQTL 8.28e-01 0.0438 0.202 0.053 CD8_TEM L2
ENSG00000123080 CDKN2C 638141 sc-eQTL 3.26e-01 -0.207 0.21 0.053 CD8_TEM L2
ENSG00000123091 RNF11 362613 sc-eQTL 6.89e-01 -0.0856 0.214 0.053 CD8_TEM L2
ENSG00000134717 BTF3L4 -457313 sc-eQTL 9.36e-01 0.0175 0.218 0.053 CD8_TEM L2
ENSG00000134744 TUT4 -954601 sc-eQTL 8.00e-01 0.0506 0.2 0.053 CD8_TEM L2
ENSG00000134748 PRPF38A -805716 sc-eQTL 4.06e-01 -0.173 0.208 0.053 CD8_TEM L2
ENSG00000154222 CC2D1B -767307 sc-eQTL 4.28e-02 -0.418 0.205 0.053 CD8_TEM L2
ENSG00000157077 ZFYVE9 -543208 sc-eQTL 1.07e-01 0.303 0.187 0.053 CD8_TEM L2
ENSG00000185104 FAF1 638619 sc-eQTL 4.05e-02 0.43 0.209 0.053 CD8_TEM L2
ENSG00000198841 KTI12 -434924 sc-eQTL 4.46e-01 0.159 0.208 0.053 CD8_TEM L2
ENSG00000078618 NRDC -280051 sc-eQTL 3.36e-01 -0.174 0.18 0.052 PB L2
ENSG00000085832 EPS15 79620 sc-eQTL 9.54e-01 0.0149 0.259 0.052 PB L2
ENSG00000117859 OSBPL9 21707 sc-eQTL 8.32e-01 0.046 0.216 0.052 PB L2
ENSG00000117862 TXNDC12 -457285 sc-eQTL 4.91e-01 -0.11 0.16 0.052 PB L2
ENSG00000123080 CDKN2C 638141 sc-eQTL 1.11e-01 -0.293 0.182 0.052 PB L2
ENSG00000123091 RNF11 362613 sc-eQTL 2.58e-01 -0.286 0.252 0.052 PB L2
ENSG00000134717 BTF3L4 -457313 sc-eQTL 4.69e-01 0.187 0.258 0.052 PB L2
ENSG00000134744 TUT4 -954601 sc-eQTL 7.19e-01 0.0855 0.237 0.052 PB L2
ENSG00000134748 PRPF38A -805716 sc-eQTL 7.21e-01 0.0802 0.224 0.052 PB L2
ENSG00000154222 CC2D1B -767307 sc-eQTL 9.94e-01 0.00173 0.246 0.052 PB L2
ENSG00000185104 FAF1 638619 sc-eQTL 9.65e-01 -0.011 0.246 0.052 PB L2
ENSG00000198841 KTI12 -434924 sc-eQTL 1.16e-01 -0.37 0.234 0.052 PB L2
ENSG00000078618 NRDC -280051 sc-eQTL 3.81e-01 0.203 0.231 0.052 gdT L2
ENSG00000085832 EPS15 79620 sc-eQTL 9.56e-01 0.014 0.254 0.052 gdT L2
ENSG00000085840 ORC1 -805537 sc-eQTL 2.12e-01 0.241 0.192 0.052 gdT L2
ENSG00000117859 OSBPL9 21707 sc-eQTL 6.77e-01 -0.106 0.254 0.052 gdT L2
ENSG00000117862 TXNDC12 -457285 sc-eQTL 3.07e-01 -0.252 0.246 0.052 gdT L2
ENSG00000123080 CDKN2C 638141 sc-eQTL 7.87e-01 -0.0682 0.252 0.052 gdT L2
ENSG00000123091 RNF11 362613 sc-eQTL 9.06e-01 0.0295 0.249 0.052 gdT L2
ENSG00000134717 BTF3L4 -457313 sc-eQTL 6.66e-01 0.109 0.251 0.052 gdT L2
ENSG00000134744 TUT4 -954601 sc-eQTL 1.63e-01 0.362 0.258 0.052 gdT L2
ENSG00000134748 PRPF38A -805716 sc-eQTL 7.46e-01 -0.0844 0.26 0.052 gdT L2
ENSG00000154222 CC2D1B -767307 sc-eQTL 3.32e-01 -0.227 0.233 0.052 gdT L2
ENSG00000157077 ZFYVE9 -543208 sc-eQTL 3.05e-01 0.23 0.224 0.052 gdT L2
ENSG00000185104 FAF1 638619 sc-eQTL 9.16e-02 0.409 0.241 0.052 gdT L2
ENSG00000198841 KTI12 -434924 sc-eQTL 1.45e-01 0.345 0.235 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000123080 CDKN2C 638141 eQTL 0.00123 -0.206 0.0635 0.00146 0.0 0.0417
ENSG00000185104 FAF1 638619 eQTL 0.017 0.0797 0.0334 0.00147 0.0 0.0417
ENSG00000232846 SLC25A6P3 -110176 eQTL 0.0478 -0.139 0.07 0.0 0.0 0.0417

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000185104 FAF1 638619 3.77e-07 1.7e-07 5.82e-08 2.31e-07 9.82e-08 8.75e-08 2.5e-07 5.68e-08 1.75e-07 9.72e-08 1.83e-07 1.46e-07 2.45e-07 8.07e-08 5.97e-08 9.11e-08 4.45e-08 1.91e-07 7.09e-08 5.48e-08 1.22e-07 1.7e-07 1.68e-07 3.59e-08 2.28e-07 1.39e-07 1.22e-07 1.17e-07 1.37e-07 1.17e-07 1.22e-07 3.72e-08 3.46e-08 9.08e-08 3.97e-08 3.07e-08 4.49e-08 8.51e-08 6.21e-08 5.56e-08 5.09e-08 1.55e-07 4.7e-08 1.24e-08 3.4e-08 1.01e-08 8.46e-08 1.9e-09 4.81e-08
ENSG00000232027 \N 226616 1.86e-06 1.5e-06 2.56e-07 1.23e-06 3.67e-07 6.47e-07 1.21e-06 4.18e-07 1.72e-06 6.77e-07 2.02e-06 1.15e-06 2.6e-06 3.58e-07 4.03e-07 9.55e-07 9.18e-07 1.09e-06 7.14e-07 5.01e-07 8.13e-07 1.95e-06 1.18e-06 5.76e-07 2.45e-06 7.53e-07 1e-06 8.46e-07 1.66e-06 1.31e-06 8.07e-07 2.57e-07 2.75e-07 5.53e-07 5.34e-07 4.45e-07 7.4e-07 2.34e-07 5.13e-07 2.93e-07 3.56e-07 2.01e-06 1.41e-07 5.67e-08 2.84e-07 2.31e-07 2.43e-07 5.32e-08 1.68e-07