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Genes within 1Mb (chr1:51477010:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC -401927 sc-eQTL 4.30e-01 -0.189 0.239 0.051 B_Activated L2
ENSG00000085832 EPS15 -42256 sc-eQTL 7.12e-01 0.0838 0.227 0.051 B_Activated L2
ENSG00000117859 OSBPL9 -100169 sc-eQTL 2.71e-01 -0.26 0.235 0.051 B_Activated L2
ENSG00000117862 TXNDC12 -579161 sc-eQTL 8.86e-01 -0.0322 0.225 0.051 B_Activated L2
ENSG00000123080 CDKN2C 516265 sc-eQTL 7.69e-01 0.0506 0.172 0.051 B_Activated L2
ENSG00000123091 RNF11 240737 sc-eQTL 9.05e-01 -0.0253 0.213 0.051 B_Activated L2
ENSG00000134717 BTF3L4 -579189 sc-eQTL 6.01e-01 -0.124 0.236 0.051 B_Activated L2
ENSG00000134748 PRPF38A -927592 sc-eQTL 3.15e-02 -0.476 0.22 0.051 B_Activated L2
ENSG00000154222 CC2D1B -889183 sc-eQTL 9.63e-01 0.01 0.217 0.051 B_Activated L2
ENSG00000185104 FAF1 516743 sc-eQTL 6.52e-02 0.393 0.212 0.051 B_Activated L2
ENSG00000198841 KTI12 -556800 sc-eQTL 7.17e-01 0.0692 0.19 0.051 B_Activated L2
ENSG00000078618 NRDC -401927 sc-eQTL 4.65e-01 0.126 0.172 0.052 PB L2
ENSG00000085832 EPS15 -42256 sc-eQTL 1.22e-01 -0.38 0.244 0.052 PB L2
ENSG00000117859 OSBPL9 -100169 sc-eQTL 6.94e-01 -0.081 0.205 0.052 PB L2
ENSG00000117862 TXNDC12 -579161 sc-eQTL 2.25e-01 0.184 0.151 0.052 PB L2
ENSG00000123080 CDKN2C 516265 sc-eQTL 7.38e-01 -0.0587 0.175 0.052 PB L2
ENSG00000123091 RNF11 240737 sc-eQTL 9.78e-01 0.00674 0.241 0.052 PB L2
ENSG00000134717 BTF3L4 -579189 sc-eQTL 3.91e-01 0.211 0.245 0.052 PB L2
ENSG00000134748 PRPF38A -927592 sc-eQTL 9.98e-01 0.000595 0.213 0.052 PB L2
ENSG00000154222 CC2D1B -889183 sc-eQTL 2.33e-02 0.526 0.229 0.052 PB L2
ENSG00000185104 FAF1 516743 sc-eQTL 9.08e-01 -0.027 0.234 0.052 PB L2
ENSG00000198841 KTI12 -556800 sc-eQTL 2.61e-01 0.252 0.223 0.052 PB L2
ENSG00000078618 NRDC -401927 sc-eQTL 9.66e-01 -0.00817 0.191 0.051 cDC L2
ENSG00000085831 TTC39A 131894 sc-eQTL 6.20e-01 -0.0309 0.0622 0.051 cDC L2
ENSG00000085832 EPS15 -42256 sc-eQTL 3.76e-01 0.188 0.212 0.051 cDC L2
ENSG00000117859 OSBPL9 -100169 sc-eQTL 3.79e-01 0.172 0.195 0.051 cDC L2
ENSG00000117862 TXNDC12 -579161 sc-eQTL 3.70e-01 0.167 0.186 0.051 cDC L2
ENSG00000123080 CDKN2C 516265 sc-eQTL 1.57e-01 -0.285 0.2 0.051 cDC L2
ENSG00000123091 RNF11 240737 sc-eQTL 7.32e-01 -0.071 0.207 0.051 cDC L2
ENSG00000134717 BTF3L4 -579189 sc-eQTL 4.67e-01 -0.137 0.188 0.051 cDC L2
ENSG00000134748 PRPF38A -927592 sc-eQTL 3.80e-01 0.169 0.192 0.051 cDC L2
ENSG00000154222 CC2D1B -889183 sc-eQTL 5.95e-02 -0.393 0.207 0.051 cDC L2
ENSG00000185104 FAF1 516743 sc-eQTL 1.72e-01 0.255 0.186 0.051 cDC L2
ENSG00000198841 KTI12 -556800 sc-eQTL 6.91e-01 -0.0782 0.197 0.051 cDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000123080 CDKN2C 516265 eQTL 1.13e-11 0.418 0.0609 0.0 0.0 0.0451
ENSG00000185104 FAF1 516743 eQTL 0.00187 -0.101 0.0325 0.00104 0.0 0.0451

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000123080 CDKN2C 516265 1.31e-06 9.74e-07 3.48e-07 1.15e-06 2.79e-07 5.15e-07 1.61e-06 3.65e-07 1.4e-06 4.31e-07 1.83e-06 6.36e-07 2.34e-06 3.03e-07 5.4e-07 8.25e-07 7.94e-07 6.56e-07 7.7e-07 6.84e-07 5.47e-07 1.49e-06 9.29e-07 5.39e-07 2.29e-06 4.83e-07 9.18e-07 6.93e-07 1.25e-06 1.36e-06 7.26e-07 1.91e-07 2.27e-07 6.78e-07 5.85e-07 4.37e-07 7.4e-07 2.04e-07 5.08e-07 2.93e-07 2.56e-07 1.62e-06 3.7e-07 1.25e-07 2.96e-07 1.26e-07 1.8e-07 5.32e-08 1.46e-07