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Genes within 1Mb (chr1:51150934:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC -728003 sc-eQTL 8.40e-02 -0.348 0.201 0.05 NK_HLA L2
ENSG00000085832 EPS15 -368332 sc-eQTL 4.39e-01 -0.119 0.154 0.05 NK_HLA L2
ENSG00000117859 OSBPL9 -426245 sc-eQTL 3.20e-01 -0.186 0.187 0.05 NK_HLA L2
ENSG00000117862 TXNDC12 -905237 sc-eQTL 6.78e-01 0.0805 0.194 0.05 NK_HLA L2
ENSG00000123080 CDKN2C 190189 sc-eQTL 5.76e-01 0.103 0.185 0.05 NK_HLA L2
ENSG00000123091 RNF11 -85339 sc-eQTL 8.79e-01 -0.0279 0.182 0.05 NK_HLA L2
ENSG00000134717 BTF3L4 -905265 sc-eQTL 5.93e-01 -0.104 0.194 0.05 NK_HLA L2
ENSG00000185104 FAF1 190667 sc-eQTL 5.00e-03 0.484 0.17 0.05 NK_HLA L2
ENSG00000198841 KTI12 -882876 sc-eQTL 9.19e-01 0.0196 0.191 0.05 NK_HLA L2
ENSG00000078618 NRDC -728003 sc-eQTL 8.97e-01 -0.0269 0.208 0.052 gdT L2
ENSG00000085832 EPS15 -368332 sc-eQTL 9.37e-01 -0.0179 0.228 0.052 gdT L2
ENSG00000117859 OSBPL9 -426245 sc-eQTL 9.67e-01 0.00949 0.229 0.052 gdT L2
ENSG00000117862 TXNDC12 -905237 sc-eQTL 7.40e-01 0.0738 0.222 0.052 gdT L2
ENSG00000123080 CDKN2C 190189 sc-eQTL 6.40e-01 0.106 0.227 0.052 gdT L2
ENSG00000123091 RNF11 -85339 sc-eQTL 1.84e-01 0.298 0.223 0.052 gdT L2
ENSG00000134717 BTF3L4 -905265 sc-eQTL 7.54e-01 -0.071 0.226 0.052 gdT L2
ENSG00000157077 ZFYVE9 -991160 sc-eQTL 2.87e-01 -0.215 0.201 0.052 gdT L2
ENSG00000185104 FAF1 190667 sc-eQTL 7.73e-01 -0.0632 0.219 0.052 gdT L2
ENSG00000198841 KTI12 -882876 sc-eQTL 4.55e-01 -0.159 0.213 0.052 gdT L2
ENSG00000078618 NRDC -728003 sc-eQTL 9.99e-01 0.000125 0.172 0.051 pDC L2
ENSG00000085831 TTC39A -194182 sc-eQTL 4.39e-01 -0.128 0.166 0.051 pDC L2
ENSG00000085832 EPS15 -368332 sc-eQTL 5.42e-02 -0.409 0.211 0.051 pDC L2
ENSG00000117859 OSBPL9 -426245 sc-eQTL 5.02e-01 0.14 0.207 0.051 pDC L2
ENSG00000117862 TXNDC12 -905237 sc-eQTL 8.99e-01 0.0264 0.207 0.051 pDC L2
ENSG00000123080 CDKN2C 190189 sc-eQTL 9.01e-01 0.022 0.177 0.051 pDC L2
ENSG00000123091 RNF11 -85339 sc-eQTL 6.32e-01 -0.0737 0.154 0.051 pDC L2
ENSG00000134717 BTF3L4 -905265 sc-eQTL 9.73e-01 -0.00702 0.203 0.051 pDC L2
ENSG00000185104 FAF1 190667 sc-eQTL 5.16e-01 -0.137 0.211 0.051 pDC L2
ENSG00000198841 KTI12 -882876 sc-eQTL 7.67e-03 0.519 0.192 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000123091 RNF11 -85339 eQTL 6.88e-05 -0.134 0.0334 0.0 0.0 0.0397
ENSG00000232027 AL671986.1 -221336 eQTL 0.0326 0.196 0.0915 0.0019 0.0 0.0397

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000123091 RNF11 -85339 7.03e-06 6.3e-06 8.34e-07 3.57e-06 1.31e-06 1.53e-06 7.6e-06 9.78e-07 5.13e-06 2.41e-06 6.45e-06 3.28e-06 9.02e-06 1.75e-06 1.04e-06 3.4e-06 2.24e-06 3.93e-06 1.54e-06 1.15e-06 2.9e-06 4.96e-06 4.6e-06 1.34e-06 8.25e-06 1.98e-06 2.39e-06 1.69e-06 4.94e-06 4.99e-06 2.69e-06 5.42e-07 5.46e-07 1.52e-06 2.05e-06 9.24e-07 9.6e-07 4.76e-07 8.26e-07 4.08e-07 2.38e-07 7.97e-06 4.55e-07 1.63e-07 4.19e-07 5.88e-07 8.55e-07 2.4e-07 3.03e-07
ENSG00000157077 \N -991160 2.74e-07 1.19e-07 3.56e-08 1.82e-07 8.92e-08 9.61e-08 1.44e-07 5.33e-08 1.41e-07 4.38e-08 1.56e-07 7.75e-08 1.41e-07 6.38e-08 6e-08 7.5e-08 3.9e-08 1.18e-07 5.21e-08 4.07e-08 1.04e-07 1.27e-07 1.32e-07 4.16e-08 1.32e-07 1.19e-07 1.11e-07 9.15e-08 1.05e-07 1.12e-07 9.73e-08 3.96e-08 3.28e-08 8.65e-08 8.98e-08 4.02e-08 5.01e-08 9.49e-08 7.23e-08 3.37e-08 4.64e-08 1.33e-07 3.99e-08 3.33e-08 6.38e-08 1.7e-08 1.23e-07 4.04e-09 4.73e-08
ENSG00000232027 AL671986.1 -221336 2.13e-06 2.16e-06 2.63e-07 1.22e-06 3.37e-07 6.4e-07 1.26e-06 3.82e-07 1.43e-06 5.15e-07 2.05e-06 7.63e-07 2.64e-06 4.11e-07 4.05e-07 9.19e-07 1.11e-06 1.09e-06 7.14e-07 5.01e-07 6.66e-07 1.92e-06 1.18e-06 5.57e-07 2.37e-06 6.58e-07 1.03e-06 7.99e-07 1.74e-06 1.24e-06 8.22e-07 1.3e-07 2.64e-07 6.27e-07 5.66e-07 4.41e-07 7.25e-07 1.55e-07 5.08e-07 3.15e-07 2.88e-07 2.17e-06 1.94e-07 8.08e-08 1.45e-07 1.23e-07 2.33e-07 7.81e-08 1.09e-07