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Genes within 1Mb (chr1:50474498:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123080 CDKN2C -486247 sc-eQTL 6.12e-01 0.0421 0.0829 0.147 B L1
ENSG00000123091 RNF11 -761775 sc-eQTL 5.12e-01 0.0511 0.0778 0.147 B L1
ENSG00000185104 FAF1 -485769 sc-eQTL 1.09e-01 -0.14 0.087 0.147 B L1
ENSG00000123080 CDKN2C -486247 sc-eQTL 9.82e-01 -0.00233 0.102 0.147 CD4T L1
ENSG00000123091 RNF11 -761775 sc-eQTL 7.04e-01 -0.0295 0.0776 0.147 CD4T L1
ENSG00000185104 FAF1 -485769 sc-eQTL 1.24e-01 -0.112 0.0728 0.147 CD4T L1
ENSG00000123080 CDKN2C -486247 sc-eQTL 9.55e-01 0.00618 0.11 0.147 CD8T L1
ENSG00000123091 RNF11 -761775 sc-eQTL 7.80e-01 0.0238 0.0851 0.147 CD8T L1
ENSG00000185104 FAF1 -485769 sc-eQTL 2.47e-01 -0.0973 0.0838 0.147 CD8T L1
ENSG00000085831 TTC39A -870618 sc-eQTL 6.30e-01 -0.0374 0.0775 0.146 DC L1
ENSG00000123080 CDKN2C -486247 sc-eQTL 2.08e-01 0.154 0.122 0.146 DC L1
ENSG00000123091 RNF11 -761775 sc-eQTL 4.82e-01 -0.0643 0.0913 0.146 DC L1
ENSG00000185104 FAF1 -485769 sc-eQTL 1.34e-01 -0.169 0.112 0.146 DC L1
ENSG00000123080 CDKN2C -486247 sc-eQTL 9.77e-01 -0.00297 0.104 0.147 Mono L1
ENSG00000123091 RNF11 -761775 sc-eQTL 9.87e-01 0.00104 0.0657 0.147 Mono L1
ENSG00000185104 FAF1 -485769 sc-eQTL 2.78e-01 0.0942 0.0865 0.147 Mono L1
ENSG00000123080 CDKN2C -486247 sc-eQTL 4.86e-01 -0.0647 0.0927 0.148 NK L1
ENSG00000123091 RNF11 -761775 sc-eQTL 1.63e-01 -0.118 0.0844 0.148 NK L1
ENSG00000185104 FAF1 -485769 sc-eQTL 8.68e-01 -0.0126 0.0758 0.148 NK L1
ENSG00000123080 CDKN2C -486247 sc-eQTL 8.12e-01 -0.0205 0.0863 0.147 Other_T L1
ENSG00000123091 RNF11 -761775 sc-eQTL 3.75e-01 -0.0813 0.0914 0.147 Other_T L1
ENSG00000185104 FAF1 -485769 sc-eQTL 1.34e-01 0.129 0.0854 0.147 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123080 CDKN2C -486247 sc-eQTL 2.11e-01 -0.129 0.103 0.156 B_Activated L2
ENSG00000123091 RNF11 -761775 sc-eQTL 3.92e-01 0.109 0.127 0.156 B_Activated L2
ENSG00000185104 FAF1 -485769 sc-eQTL 1.53e-02 -0.309 0.126 0.156 B_Activated L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 3.25e-01 0.106 0.107 0.146 B_Intermediate L2
ENSG00000123091 RNF11 -761775 sc-eQTL 3.67e-01 0.0871 0.0964 0.146 B_Intermediate L2
ENSG00000185104 FAF1 -485769 sc-eQTL 2.00e-01 -0.137 0.107 0.146 B_Intermediate L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 5.09e-01 -0.0745 0.113 0.144 B_Memory L2
ENSG00000123091 RNF11 -761775 sc-eQTL 8.23e-01 -0.0249 0.112 0.144 B_Memory L2
ENSG00000185104 FAF1 -485769 sc-eQTL 5.01e-01 0.0763 0.113 0.144 B_Memory L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 7.96e-01 -0.0302 0.116 0.147 B_Naive1 L2
ENSG00000123091 RNF11 -761775 sc-eQTL 1.95e-01 0.126 0.0969 0.147 B_Naive1 L2
ENSG00000185104 FAF1 -485769 sc-eQTL 8.60e-01 0.0167 0.0944 0.147 B_Naive1 L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 2.83e-04 0.339 0.0918 0.146 B_Naive2 L2
ENSG00000123091 RNF11 -761775 sc-eQTL 5.01e-01 -0.076 0.113 0.146 B_Naive2 L2
ENSG00000185104 FAF1 -485769 sc-eQTL 6.24e-01 -0.0508 0.104 0.146 B_Naive2 L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 2.54e-01 0.149 0.13 0.145 CD4_CTL L2
ENSG00000123091 RNF11 -761775 sc-eQTL 4.72e-01 -0.0887 0.123 0.145 CD4_CTL L2
ENSG00000185104 FAF1 -485769 sc-eQTL 1.57e-01 -0.156 0.11 0.145 CD4_CTL L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 4.63e-01 -0.0785 0.107 0.147 CD4_Naive L2
ENSG00000123091 RNF11 -761775 sc-eQTL 4.11e-01 -0.0623 0.0757 0.147 CD4_Naive L2
ENSG00000185104 FAF1 -485769 sc-eQTL 7.23e-01 -0.0273 0.0769 0.147 CD4_Naive L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 4.96e-01 0.0786 0.115 0.147 CD4_TCM L2
ENSG00000123091 RNF11 -761775 sc-eQTL 4.02e-01 0.0784 0.0934 0.147 CD4_TCM L2
ENSG00000185104 FAF1 -485769 sc-eQTL 1.37e-02 -0.235 0.0945 0.147 CD4_TCM L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 9.28e-01 0.0112 0.124 0.147 CD4_TEM L2
ENSG00000123091 RNF11 -761775 sc-eQTL 5.11e-01 -0.0652 0.099 0.147 CD4_TEM L2
ENSG00000185104 FAF1 -485769 sc-eQTL 7.25e-01 -0.0342 0.0972 0.147 CD4_TEM L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 8.42e-01 -0.024 0.12 0.147 CD8_CTL L2
ENSG00000123091 RNF11 -761775 sc-eQTL 7.53e-02 -0.191 0.107 0.147 CD8_CTL L2
ENSG00000185104 FAF1 -485769 sc-eQTL 1.47e-01 -0.143 0.0983 0.147 CD8_CTL L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 9.74e-01 -0.00402 0.124 0.147 CD8_Naive L2
ENSG00000123091 RNF11 -761775 sc-eQTL 7.81e-01 0.0262 0.0942 0.147 CD8_Naive L2
ENSG00000185104 FAF1 -485769 sc-eQTL 6.82e-01 0.0397 0.0967 0.147 CD8_Naive L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 4.75e-01 0.0853 0.119 0.141 CD8_TCM L2
ENSG00000123091 RNF11 -761775 sc-eQTL 7.40e-01 0.0415 0.125 0.141 CD8_TCM L2
ENSG00000185104 FAF1 -485769 sc-eQTL 5.70e-01 -0.0637 0.112 0.141 CD8_TCM L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 9.19e-01 -0.0136 0.133 0.142 CD8_TEM L2
ENSG00000123091 RNF11 -761775 sc-eQTL 4.63e-01 0.0994 0.135 0.142 CD8_TEM L2
ENSG00000185104 FAF1 -485769 sc-eQTL 2.63e-01 -0.149 0.133 0.142 CD8_TEM L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 5.85e-01 -0.0696 0.127 0.141 MAIT L2
ENSG00000123091 RNF11 -761775 sc-eQTL 5.86e-01 0.0612 0.112 0.141 MAIT L2
ENSG00000185104 FAF1 -485769 sc-eQTL 4.35e-01 -0.0852 0.109 0.141 MAIT L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 1.01e-01 -0.184 0.112 0.153 NK_CD56bright L2
ENSG00000123091 RNF11 -761775 sc-eQTL 9.05e-01 0.0134 0.112 0.153 NK_CD56bright L2
ENSG00000185104 FAF1 -485769 sc-eQTL 7.34e-01 -0.0356 0.105 0.153 NK_CD56bright L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 5.27e-01 0.0644 0.102 0.149 NK_CD56dim L2
ENSG00000123091 RNF11 -761775 sc-eQTL 1.04e-01 -0.169 0.103 0.149 NK_CD56dim L2
ENSG00000185104 FAF1 -485769 sc-eQTL 5.54e-01 -0.0533 0.0899 0.149 NK_CD56dim L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 1.12e-01 -0.188 0.118 0.151 NK_HLA L2
ENSG00000123091 RNF11 -761775 sc-eQTL 9.34e-01 0.00975 0.117 0.151 NK_HLA L2
ENSG00000185104 FAF1 -485769 sc-eQTL 5.22e-01 0.0717 0.112 0.151 NK_HLA L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 3.88e-01 -0.0868 0.1 0.149 NK_cytokine L2
ENSG00000123091 RNF11 -761775 sc-eQTL 9.34e-01 0.00899 0.109 0.149 NK_cytokine L2
ENSG00000185104 FAF1 -485769 sc-eQTL 5.49e-01 0.0525 0.0875 0.149 NK_cytokine L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 6.30e-01 0.0538 0.111 0.152 PB L2
ENSG00000123091 RNF11 -761775 sc-eQTL 8.77e-01 -0.0237 0.153 0.152 PB L2
ENSG00000185104 FAF1 -485769 sc-eQTL 3.02e-01 -0.154 0.148 0.152 PB L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 6.41e-01 0.0438 0.0937 0.148 Pro_T L2
ENSG00000123091 RNF11 -761775 sc-eQTL 5.89e-01 -0.0643 0.119 0.148 Pro_T L2
ENSG00000185104 FAF1 -485769 sc-eQTL 1.64e-01 0.136 0.0971 0.148 Pro_T L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 7.44e-01 0.0367 0.112 0.147 Treg L2
ENSG00000123091 RNF11 -761775 sc-eQTL 2.25e-01 -0.145 0.119 0.147 Treg L2
ENSG00000185104 FAF1 -485769 sc-eQTL 4.20e-02 -0.217 0.106 0.147 Treg L2
ENSG00000085831 TTC39A -870618 sc-eQTL 3.91e-01 -0.0332 0.0386 0.151 cDC L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 2.97e-02 0.271 0.124 0.151 cDC L2
ENSG00000123091 RNF11 -761775 sc-eQTL 6.40e-01 -0.0603 0.129 0.151 cDC L2
ENSG00000185104 FAF1 -485769 sc-eQTL 1.47e-01 -0.169 0.116 0.151 cDC L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 4.29e-01 0.0878 0.111 0.147 cMono_IL1B L2
ENSG00000123091 RNF11 -761775 sc-eQTL 8.78e-01 0.0112 0.0726 0.147 cMono_IL1B L2
ENSG00000185104 FAF1 -485769 sc-eQTL 2.45e-01 0.118 0.101 0.147 cMono_IL1B L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 3.69e-01 -0.109 0.121 0.147 cMono_S100A L2
ENSG00000123091 RNF11 -761775 sc-eQTL 6.30e-01 0.0461 0.0955 0.147 cMono_S100A L2
ENSG00000185104 FAF1 -485769 sc-eQTL 7.24e-01 0.0406 0.115 0.147 cMono_S100A L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 1.71e-01 -0.208 0.151 0.142 gdT L2
ENSG00000123091 RNF11 -761775 sc-eQTL 3.84e-01 0.131 0.15 0.142 gdT L2
ENSG00000185104 FAF1 -485769 sc-eQTL 3.07e-01 0.15 0.146 0.142 gdT L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 4.41e-01 0.0862 0.112 0.151 intMono L2
ENSG00000123091 RNF11 -761775 sc-eQTL 4.06e-01 -0.0916 0.11 0.151 intMono L2
ENSG00000185104 FAF1 -485769 sc-eQTL 7.28e-01 -0.0407 0.117 0.151 intMono L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 6.40e-01 0.0542 0.116 0.154 ncMono L2
ENSG00000123091 RNF11 -761775 sc-eQTL 1.61e-01 -0.154 0.109 0.154 ncMono L2
ENSG00000185104 FAF1 -485769 sc-eQTL 5.50e-01 0.0586 0.098 0.154 ncMono L2
ENSG00000085831 TTC39A -870618 sc-eQTL 9.63e-01 0.0053 0.113 0.141 pDC L2
ENSG00000123080 CDKN2C -486247 sc-eQTL 2.23e-01 -0.147 0.12 0.141 pDC L2
ENSG00000123091 RNF11 -761775 sc-eQTL 5.49e-01 0.063 0.105 0.141 pDC L2
ENSG00000185104 FAF1 -485769 sc-eQTL 5.86e-01 -0.0787 0.144 0.141 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123080 CDKN2C -486247 sc-eQTL 8.31e-01 -0.0248 0.116 0.147 B_Memory LOneK1K
ENSG00000123091 RNF11 -761775 sc-eQTL 9.40e-01 -0.00627 0.0826 0.147 B_Memory LOneK1K
ENSG00000185104 FAF1 -485769 sc-eQTL 1.50e-01 -0.149 0.103 0.147 B_Memory LOneK1K
ENSG00000123080 CDKN2C -486247 sc-eQTL 1.65e-01 0.157 0.113 0.147 B_Naive LOneK1K
ENSG00000123091 RNF11 -761775 sc-eQTL 4.75e-01 0.068 0.095 0.147 B_Naive LOneK1K
ENSG00000185104 FAF1 -485769 sc-eQTL 6.54e-01 -0.0411 0.0916 0.147 B_Naive LOneK1K
ENSG00000123080 CDKN2C -486247 sc-eQTL 9.49e-01 0.00677 0.106 0.147 CD14_Mono LOneK1K
ENSG00000123091 RNF11 -761775 sc-eQTL 8.16e-01 0.0162 0.0694 0.147 CD14_Mono LOneK1K
ENSG00000185104 FAF1 -485769 sc-eQTL 3.04e-01 0.1 0.0972 0.147 CD14_Mono LOneK1K
ENSG00000123080 CDKN2C -486247 sc-eQTL 3.80e-01 0.1 0.114 0.149 CD16_Mono LOneK1K
ENSG00000123091 RNF11 -761775 sc-eQTL 1.60e-01 -0.14 0.099 0.149 CD16_Mono LOneK1K
ENSG00000185104 FAF1 -485769 sc-eQTL 6.62e-01 0.0396 0.0905 0.149 CD16_Mono LOneK1K
ENSG00000123080 CDKN2C -486247 sc-eQTL 9.74e-01 0.00312 0.0952 0.149 NK_CD56dim LOneK1K
ENSG00000123091 RNF11 -761775 sc-eQTL 1.54e-01 -0.125 0.087 0.149 NK_CD56dim LOneK1K
ENSG00000185104 FAF1 -485769 sc-eQTL 8.11e-01 -0.0185 0.0772 0.149 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000232027 AL671986.1 -897772 eQTL 0.139 0.0655 0.0442 0.00109 0.0 0.182

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000232027 AL671986.1 -897772 5.14e-07 2.5e-07 1.23e-07 2.53e-07 1.09e-07 1.57e-07 4.05e-07 1.62e-07 3.62e-07 2.26e-07 3.47e-07 3.36e-07 3.6e-07 1.01e-07 1.26e-07 1.92e-07 2.11e-07 3.04e-07 2.25e-07 8.11e-08 2.01e-07 2.99e-07 2.81e-07 6.65e-08 3.41e-07 2.71e-07 2.58e-07 1.52e-07 2.4e-07 2.02e-07 1.71e-07 6.58e-08 5.53e-08 1.39e-07 1.22e-07 1.66e-07 1.08e-07 7.86e-08 4.04e-08 7.65e-08 3.24e-08 1.62e-07 2.67e-08 1.61e-08 4.99e-08 1.35e-08 8.75e-08 1.11e-08 5.13e-08