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Genes within 1Mb (chr1:50426530:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123080 CDKN2C -534215 sc-eQTL 9.92e-01 0.000973 0.0912 0.13 B L1
ENSG00000123091 RNF11 -809743 sc-eQTL 1.94e-01 0.111 0.0853 0.13 B L1
ENSG00000185104 FAF1 -533737 sc-eQTL 5.08e-01 0.0638 0.0962 0.13 B L1
ENSG00000123080 CDKN2C -534215 sc-eQTL 2.59e-01 -0.124 0.11 0.13 CD4T L1
ENSG00000123091 RNF11 -809743 sc-eQTL 2.54e-01 -0.0957 0.0837 0.13 CD4T L1
ENSG00000185104 FAF1 -533737 sc-eQTL 7.79e-01 0.0223 0.0791 0.13 CD4T L1
ENSG00000123080 CDKN2C -534215 sc-eQTL 3.75e-02 -0.249 0.119 0.13 CD8T L1
ENSG00000123091 RNF11 -809743 sc-eQTL 6.79e-01 -0.0383 0.0927 0.13 CD8T L1
ENSG00000185104 FAF1 -533737 sc-eQTL 8.94e-01 -0.0122 0.0915 0.13 CD8T L1
ENSG00000085831 TTC39A -918586 sc-eQTL 5.23e-01 -0.0517 0.0808 0.126 DC L1
ENSG00000123080 CDKN2C -534215 sc-eQTL 3.83e-02 -0.264 0.127 0.126 DC L1
ENSG00000123091 RNF11 -809743 sc-eQTL 2.25e-02 0.216 0.0941 0.126 DC L1
ENSG00000185104 FAF1 -533737 sc-eQTL 7.98e-01 -0.0301 0.118 0.126 DC L1
ENSG00000123080 CDKN2C -534215 sc-eQTL 9.73e-01 0.00378 0.113 0.13 Mono L1
ENSG00000123091 RNF11 -809743 sc-eQTL 7.11e-02 -0.127 0.0703 0.13 Mono L1
ENSG00000185104 FAF1 -533737 sc-eQTL 3.20e-02 -0.2 0.0925 0.13 Mono L1
ENSG00000123080 CDKN2C -534215 sc-eQTL 8.59e-02 0.173 0.1 0.131 NK L1
ENSG00000123091 RNF11 -809743 sc-eQTL 8.90e-01 0.0128 0.0923 0.131 NK L1
ENSG00000185104 FAF1 -533737 sc-eQTL 9.26e-02 0.138 0.082 0.131 NK L1
ENSG00000123080 CDKN2C -534215 sc-eQTL 1.74e-01 0.125 0.0916 0.13 Other_T L1
ENSG00000123091 RNF11 -809743 sc-eQTL 3.32e-01 -0.0947 0.0974 0.13 Other_T L1
ENSG00000185104 FAF1 -533737 sc-eQTL 2.42e-03 0.275 0.0896 0.13 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123080 CDKN2C -534215 sc-eQTL 6.64e-01 -0.0475 0.109 0.135 B_Activated L2
ENSG00000123091 RNF11 -809743 sc-eQTL 5.19e-01 0.0874 0.135 0.135 B_Activated L2
ENSG00000185104 FAF1 -533737 sc-eQTL 2.80e-02 0.297 0.134 0.135 B_Activated L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 3.98e-01 -0.0985 0.116 0.131 B_Intermediate L2
ENSG00000123091 RNF11 -809743 sc-eQTL 9.70e-01 -0.00397 0.105 0.131 B_Intermediate L2
ENSG00000185104 FAF1 -533737 sc-eQTL 4.80e-01 -0.082 0.116 0.131 B_Intermediate L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 6.74e-01 0.0504 0.12 0.131 B_Memory L2
ENSG00000123091 RNF11 -809743 sc-eQTL 9.18e-01 -0.0123 0.119 0.131 B_Memory L2
ENSG00000185104 FAF1 -533737 sc-eQTL 4.50e-01 0.091 0.12 0.131 B_Memory L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 9.66e-02 0.213 0.127 0.13 B_Naive1 L2
ENSG00000123091 RNF11 -809743 sc-eQTL 3.83e-01 0.0935 0.107 0.13 B_Naive1 L2
ENSG00000185104 FAF1 -533737 sc-eQTL 3.47e-01 -0.0978 0.104 0.13 B_Naive1 L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 1.33e-01 -0.155 0.103 0.131 B_Naive2 L2
ENSG00000123091 RNF11 -809743 sc-eQTL 9.88e-02 0.203 0.123 0.131 B_Naive2 L2
ENSG00000185104 FAF1 -533737 sc-eQTL 3.56e-01 0.105 0.113 0.131 B_Naive2 L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 5.25e-01 0.0879 0.138 0.132 CD4_CTL L2
ENSG00000123091 RNF11 -809743 sc-eQTL 5.27e-01 -0.0824 0.13 0.132 CD4_CTL L2
ENSG00000185104 FAF1 -533737 sc-eQTL 3.25e-01 0.115 0.116 0.132 CD4_CTL L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 3.35e-02 -0.245 0.114 0.13 CD4_Naive L2
ENSG00000123091 RNF11 -809743 sc-eQTL 3.65e-01 -0.0743 0.0817 0.13 CD4_Naive L2
ENSG00000185104 FAF1 -533737 sc-eQTL 5.13e-01 0.0544 0.083 0.13 CD4_Naive L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 5.88e-01 0.0682 0.126 0.13 CD4_TCM L2
ENSG00000123091 RNF11 -809743 sc-eQTL 1.27e-01 -0.156 0.101 0.13 CD4_TCM L2
ENSG00000185104 FAF1 -533737 sc-eQTL 4.90e-01 -0.0722 0.104 0.13 CD4_TCM L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 4.00e-01 0.113 0.134 0.13 CD4_TEM L2
ENSG00000123091 RNF11 -809743 sc-eQTL 5.43e-01 -0.0653 0.107 0.13 CD4_TEM L2
ENSG00000185104 FAF1 -533737 sc-eQTL 6.00e-02 0.198 0.104 0.13 CD4_TEM L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 5.15e-01 -0.082 0.126 0.13 CD8_CTL L2
ENSG00000123091 RNF11 -809743 sc-eQTL 9.72e-01 0.00392 0.113 0.13 CD8_CTL L2
ENSG00000185104 FAF1 -533737 sc-eQTL 2.73e-01 0.113 0.103 0.13 CD8_CTL L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 9.48e-02 -0.226 0.135 0.13 CD8_Naive L2
ENSG00000123091 RNF11 -809743 sc-eQTL 6.99e-01 0.0397 0.103 0.13 CD8_Naive L2
ENSG00000185104 FAF1 -533737 sc-eQTL 1.85e-01 -0.14 0.105 0.13 CD8_Naive L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 3.72e-01 0.111 0.124 0.125 CD8_TCM L2
ENSG00000123091 RNF11 -809743 sc-eQTL 2.04e-01 -0.165 0.13 0.125 CD8_TCM L2
ENSG00000185104 FAF1 -533737 sc-eQTL 1.04e-01 -0.189 0.116 0.125 CD8_TCM L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 8.83e-01 0.0204 0.138 0.128 CD8_TEM L2
ENSG00000123091 RNF11 -809743 sc-eQTL 8.92e-02 -0.239 0.14 0.128 CD8_TEM L2
ENSG00000185104 FAF1 -533737 sc-eQTL 4.53e-01 0.104 0.138 0.128 CD8_TEM L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 3.32e-01 0.13 0.134 0.132 MAIT L2
ENSG00000123091 RNF11 -809743 sc-eQTL 3.89e-01 -0.102 0.118 0.132 MAIT L2
ENSG00000185104 FAF1 -533737 sc-eQTL 5.04e-01 0.0769 0.115 0.132 MAIT L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 2.07e-01 0.158 0.125 0.133 NK_CD56bright L2
ENSG00000123091 RNF11 -809743 sc-eQTL 2.33e-01 -0.149 0.125 0.133 NK_CD56bright L2
ENSG00000185104 FAF1 -533737 sc-eQTL 6.55e-01 0.0521 0.116 0.133 NK_CD56bright L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 9.36e-01 0.00902 0.111 0.131 NK_CD56dim L2
ENSG00000123091 RNF11 -809743 sc-eQTL 5.53e-01 0.0676 0.114 0.131 NK_CD56dim L2
ENSG00000185104 FAF1 -533737 sc-eQTL 9.70e-03 0.253 0.0969 0.131 NK_CD56dim L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 2.83e-01 0.141 0.131 0.135 NK_HLA L2
ENSG00000123091 RNF11 -809743 sc-eQTL 2.87e-01 -0.138 0.129 0.135 NK_HLA L2
ENSG00000185104 FAF1 -533737 sc-eQTL 7.71e-01 -0.0359 0.123 0.135 NK_HLA L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 1.72e-01 0.15 0.109 0.131 NK_cytokine L2
ENSG00000123091 RNF11 -809743 sc-eQTL 2.97e-01 -0.124 0.119 0.131 NK_cytokine L2
ENSG00000185104 FAF1 -533737 sc-eQTL 6.40e-01 -0.0447 0.0955 0.131 NK_cytokine L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 7.36e-01 -0.0412 0.122 0.137 PB L2
ENSG00000123091 RNF11 -809743 sc-eQTL 2.78e-01 -0.181 0.166 0.137 PB L2
ENSG00000185104 FAF1 -533737 sc-eQTL 3.02e-01 0.168 0.162 0.137 PB L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 8.40e-01 0.0207 0.102 0.128 Pro_T L2
ENSG00000123091 RNF11 -809743 sc-eQTL 3.97e-01 -0.11 0.129 0.128 Pro_T L2
ENSG00000185104 FAF1 -533737 sc-eQTL 7.57e-01 -0.0329 0.106 0.128 Pro_T L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 5.24e-01 -0.0752 0.118 0.13 Treg L2
ENSG00000123091 RNF11 -809743 sc-eQTL 4.94e-01 -0.0859 0.125 0.13 Treg L2
ENSG00000185104 FAF1 -533737 sc-eQTL 7.67e-01 0.0334 0.113 0.13 Treg L2
ENSG00000085831 TTC39A -918586 sc-eQTL 3.59e-01 -0.0373 0.0406 0.137 cDC L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 1.17e-01 -0.206 0.131 0.137 cDC L2
ENSG00000123091 RNF11 -809743 sc-eQTL 2.43e-01 0.158 0.135 0.137 cDC L2
ENSG00000185104 FAF1 -533737 sc-eQTL 6.09e-01 -0.0626 0.122 0.137 cDC L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 7.26e-01 -0.0418 0.119 0.13 cMono_IL1B L2
ENSG00000123091 RNF11 -809743 sc-eQTL 2.17e-02 -0.179 0.0772 0.13 cMono_IL1B L2
ENSG00000185104 FAF1 -533737 sc-eQTL 6.12e-02 -0.203 0.108 0.13 cMono_IL1B L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 7.09e-01 0.0492 0.132 0.13 cMono_S100A L2
ENSG00000123091 RNF11 -809743 sc-eQTL 7.77e-01 0.0294 0.104 0.13 cMono_S100A L2
ENSG00000185104 FAF1 -533737 sc-eQTL 1.68e-01 -0.172 0.124 0.13 cMono_S100A L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 5.92e-01 0.0874 0.163 0.124 gdT L2
ENSG00000123091 RNF11 -809743 sc-eQTL 1.92e-01 -0.21 0.16 0.124 gdT L2
ENSG00000185104 FAF1 -533737 sc-eQTL 7.25e-02 0.281 0.155 0.124 gdT L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 2.16e-01 -0.15 0.121 0.129 intMono L2
ENSG00000123091 RNF11 -809743 sc-eQTL 6.38e-01 -0.0563 0.119 0.129 intMono L2
ENSG00000185104 FAF1 -533737 sc-eQTL 8.77e-01 -0.0197 0.127 0.129 intMono L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 8.02e-01 0.0319 0.127 0.127 ncMono L2
ENSG00000123091 RNF11 -809743 sc-eQTL 1.05e-01 -0.195 0.12 0.127 ncMono L2
ENSG00000185104 FAF1 -533737 sc-eQTL 2.57e-01 -0.122 0.107 0.127 ncMono L2
ENSG00000085831 TTC39A -918586 sc-eQTL 3.08e-01 -0.118 0.115 0.13 pDC L2
ENSG00000123080 CDKN2C -534215 sc-eQTL 4.73e-01 -0.0883 0.123 0.13 pDC L2
ENSG00000123091 RNF11 -809743 sc-eQTL 7.24e-02 0.191 0.106 0.13 pDC L2
ENSG00000185104 FAF1 -533737 sc-eQTL 4.12e-01 0.12 0.146 0.13 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123080 CDKN2C -534215 sc-eQTL 8.37e-01 0.026 0.126 0.13 B_Memory LOneK1K
ENSG00000123091 RNF11 -809743 sc-eQTL 8.55e-01 -0.0164 0.0896 0.13 B_Memory LOneK1K
ENSG00000185104 FAF1 -533737 sc-eQTL 6.05e-01 0.058 0.112 0.13 B_Memory LOneK1K
ENSG00000123080 CDKN2C -534215 sc-eQTL 4.68e-01 0.0904 0.124 0.13 B_Naive LOneK1K
ENSG00000123091 RNF11 -809743 sc-eQTL 2.01e-01 0.133 0.104 0.13 B_Naive LOneK1K
ENSG00000185104 FAF1 -533737 sc-eQTL 9.59e-01 0.00517 0.1 0.13 B_Naive LOneK1K
ENSG00000123080 CDKN2C -534215 sc-eQTL 8.62e-01 0.0199 0.114 0.13 CD14_Mono LOneK1K
ENSG00000123091 RNF11 -809743 sc-eQTL 1.40e-01 -0.11 0.0742 0.13 CD14_Mono LOneK1K
ENSG00000185104 FAF1 -533737 sc-eQTL 1.27e-02 -0.259 0.103 0.13 CD14_Mono LOneK1K
ENSG00000123080 CDKN2C -534215 sc-eQTL 7.43e-01 -0.0405 0.124 0.129 CD16_Mono LOneK1K
ENSG00000123091 RNF11 -809743 sc-eQTL 3.30e-01 -0.105 0.107 0.129 CD16_Mono LOneK1K
ENSG00000185104 FAF1 -533737 sc-eQTL 2.98e-01 -0.102 0.0976 0.129 CD16_Mono LOneK1K
ENSG00000123080 CDKN2C -534215 sc-eQTL 1.35e-01 0.155 0.103 0.131 NK_CD56dim LOneK1K
ENSG00000123091 RNF11 -809743 sc-eQTL 8.84e-01 0.0139 0.0954 0.131 NK_CD56dim LOneK1K
ENSG00000185104 FAF1 -533737 sc-eQTL 4.20e-02 0.171 0.0834 0.131 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000123080 CDKN2C -534215 eQTL 4.2799999999999996e-55 0.618 0.037 0.0 0.0 0.107
ENSG00000185104 FAF1 -533737 eQTL 0.00426 -0.0628 0.0219 0.0 0.0 0.107
ENSG00000232027 AL671986.1 -945740 eQTL 0.0913 0.0954 0.0565 0.00116 0.0 0.107

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000123080 CDKN2C -534215 3.62e-07 2.17e-07 7.45e-08 2.87e-07 1.07e-07 9.31e-08 2.63e-07 6.2e-08 1.94e-07 1.21e-07 2.18e-07 1.48e-07 3.18e-07 8.26e-08 7.35e-08 1.01e-07 7.3e-08 2.66e-07 8e-08 8e-08 1.34e-07 1.89e-07 2e-07 3.83e-08 2.99e-07 1.65e-07 1.31e-07 1.52e-07 1.44e-07 2.01e-07 1.39e-07 8.02e-08 4.23e-08 1.17e-07 1.22e-07 6.23e-08 6.57e-08 5.36e-08 4.99e-08 5.64e-08 4.79e-08 2.19e-07 3.14e-08 1.7e-08 7.89e-08 8.76e-09 7.8e-08 2.75e-09 4.74e-08
ENSG00000185104 FAF1 -533737 3.62e-07 2.17e-07 7.45e-08 2.87e-07 1.07e-07 9.31e-08 2.63e-07 6.2e-08 1.94e-07 1.21e-07 2.18e-07 1.48e-07 3.18e-07 8.26e-08 7.35e-08 1.01e-07 7.3e-08 2.66e-07 8e-08 8e-08 1.33e-07 1.89e-07 2e-07 3.83e-08 2.99e-07 1.65e-07 1.31e-07 1.52e-07 1.44e-07 2.01e-07 1.39e-07 8.14e-08 3.8e-08 1.17e-07 1.22e-07 6.23e-08 6.67e-08 5.36e-08 4.74e-08 5.64e-08 4.79e-08 2.5e-07 3.19e-08 1.71e-08 8.01e-08 8.76e-09 8.21e-08 2.75e-09 4.74e-08