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Genes within 1Mb (chr1:50397440:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123080 CDKN2C -563305 sc-eQTL 9.84e-01 0.00192 0.0962 0.885 B L1
ENSG00000123091 RNF11 -838833 sc-eQTL 2.62e-01 -0.101 0.09 0.885 B L1
ENSG00000185104 FAF1 -562827 sc-eQTL 2.78e-01 -0.11 0.101 0.885 B L1
ENSG00000123080 CDKN2C -563305 sc-eQTL 4.27e-01 0.092 0.116 0.885 CD4T L1
ENSG00000123091 RNF11 -838833 sc-eQTL 5.27e-01 0.0558 0.0881 0.885 CD4T L1
ENSG00000185104 FAF1 -562827 sc-eQTL 7.87e-01 -0.0225 0.0832 0.885 CD4T L1
ENSG00000123080 CDKN2C -563305 sc-eQTL 1.01e-01 0.208 0.126 0.885 CD8T L1
ENSG00000123091 RNF11 -838833 sc-eQTL 6.57e-01 -0.0435 0.0978 0.885 CD8T L1
ENSG00000185104 FAF1 -562827 sc-eQTL 8.18e-01 -0.0223 0.0966 0.885 CD8T L1
ENSG00000085831 TTC39A -947676 sc-eQTL 9.59e-01 0.00436 0.0847 0.885 DC L1
ENSG00000123080 CDKN2C -563305 sc-eQTL 2.06e-02 0.309 0.132 0.885 DC L1
ENSG00000123091 RNF11 -838833 sc-eQTL 3.06e-02 -0.215 0.0986 0.885 DC L1
ENSG00000185104 FAF1 -562827 sc-eQTL 8.72e-01 -0.0199 0.123 0.885 DC L1
ENSG00000123080 CDKN2C -563305 sc-eQTL 3.93e-01 -0.101 0.118 0.885 Mono L1
ENSG00000123091 RNF11 -838833 sc-eQTL 1.86e-01 0.0986 0.0743 0.885 Mono L1
ENSG00000185104 FAF1 -562827 sc-eQTL 3.19e-02 0.211 0.0975 0.885 Mono L1
ENSG00000123080 CDKN2C -563305 sc-eQTL 1.03e-01 -0.174 0.106 0.884 NK L1
ENSG00000123091 RNF11 -838833 sc-eQTL 4.06e-01 -0.0812 0.0975 0.884 NK L1
ENSG00000185104 FAF1 -562827 sc-eQTL 1.31e-01 -0.131 0.0868 0.884 NK L1
ENSG00000123080 CDKN2C -563305 sc-eQTL 1.36e-01 -0.145 0.0968 0.885 Other_T L1
ENSG00000123091 RNF11 -838833 sc-eQTL 4.60e-01 0.0764 0.103 0.885 Other_T L1
ENSG00000185104 FAF1 -562827 sc-eQTL 2.92e-03 -0.286 0.0948 0.885 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123080 CDKN2C -563305 sc-eQTL 5.97e-01 0.0612 0.115 0.88 B_Activated L2
ENSG00000123091 RNF11 -838833 sc-eQTL 5.16e-01 -0.093 0.143 0.88 B_Activated L2
ENSG00000185104 FAF1 -562827 sc-eQTL 4.67e-03 -0.403 0.141 0.88 B_Activated L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 7.75e-01 0.035 0.122 0.884 B_Intermediate L2
ENSG00000123091 RNF11 -838833 sc-eQTL 9.76e-01 -0.00328 0.11 0.884 B_Intermediate L2
ENSG00000185104 FAF1 -562827 sc-eQTL 4.89e-01 0.0843 0.122 0.884 B_Intermediate L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 4.18e-01 -0.102 0.126 0.884 B_Memory L2
ENSG00000123091 RNF11 -838833 sc-eQTL 9.70e-01 -0.00471 0.125 0.884 B_Memory L2
ENSG00000185104 FAF1 -562827 sc-eQTL 2.51e-01 -0.145 0.126 0.884 B_Memory L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 2.06e-01 -0.172 0.136 0.885 B_Naive1 L2
ENSG00000123091 RNF11 -838833 sc-eQTL 5.15e-01 -0.0742 0.114 0.885 B_Naive1 L2
ENSG00000185104 FAF1 -562827 sc-eQTL 8.03e-02 0.193 0.11 0.885 B_Naive1 L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 9.91e-02 0.181 0.109 0.884 B_Naive2 L2
ENSG00000123091 RNF11 -838833 sc-eQTL 1.60e-01 -0.184 0.13 0.884 B_Naive2 L2
ENSG00000185104 FAF1 -562827 sc-eQTL 1.83e-01 -0.16 0.12 0.884 B_Naive2 L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 3.31e-01 -0.144 0.148 0.882 CD4_CTL L2
ENSG00000123091 RNF11 -838833 sc-eQTL 5.64e-01 0.0809 0.14 0.882 CD4_CTL L2
ENSG00000185104 FAF1 -562827 sc-eQTL 5.60e-01 -0.0731 0.125 0.882 CD4_CTL L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 1.22e-02 0.303 0.12 0.885 CD4_Naive L2
ENSG00000123091 RNF11 -838833 sc-eQTL 5.47e-01 0.0519 0.0861 0.885 CD4_Naive L2
ENSG00000185104 FAF1 -562827 sc-eQTL 4.96e-01 -0.0595 0.0873 0.885 CD4_Naive L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 3.94e-01 -0.113 0.133 0.885 CD4_TCM L2
ENSG00000123091 RNF11 -838833 sc-eQTL 4.24e-01 0.0861 0.107 0.885 CD4_TCM L2
ENSG00000185104 FAF1 -562827 sc-eQTL 3.45e-01 0.104 0.11 0.885 CD4_TCM L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 5.59e-01 -0.0833 0.142 0.885 CD4_TEM L2
ENSG00000123091 RNF11 -838833 sc-eQTL 6.45e-01 0.0526 0.114 0.885 CD4_TEM L2
ENSG00000185104 FAF1 -562827 sc-eQTL 1.99e-02 -0.259 0.11 0.885 CD4_TEM L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 8.71e-01 0.0219 0.134 0.885 CD8_CTL L2
ENSG00000123091 RNF11 -838833 sc-eQTL 9.18e-01 -0.0124 0.12 0.885 CD8_CTL L2
ENSG00000185104 FAF1 -562827 sc-eQTL 2.62e-01 -0.124 0.11 0.885 CD8_CTL L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 4.18e-02 0.294 0.144 0.885 CD8_Naive L2
ENSG00000123091 RNF11 -838833 sc-eQTL 1.44e-01 -0.16 0.109 0.885 CD8_Naive L2
ENSG00000185104 FAF1 -562827 sc-eQTL 4.41e-01 0.0869 0.113 0.885 CD8_Naive L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 8.15e-01 -0.0312 0.133 0.891 CD8_TCM L2
ENSG00000123091 RNF11 -838833 sc-eQTL 7.96e-02 0.243 0.138 0.891 CD8_TCM L2
ENSG00000185104 FAF1 -562827 sc-eQTL 2.66e-01 0.138 0.124 0.891 CD8_TCM L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 8.64e-01 0.0254 0.148 0.888 CD8_TEM L2
ENSG00000123091 RNF11 -838833 sc-eQTL 8.90e-02 0.255 0.149 0.888 CD8_TEM L2
ENSG00000185104 FAF1 -562827 sc-eQTL 9.15e-01 -0.0159 0.148 0.888 CD8_TEM L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 5.60e-01 -0.0843 0.144 0.883 MAIT L2
ENSG00000123091 RNF11 -838833 sc-eQTL 8.80e-01 0.0193 0.127 0.883 MAIT L2
ENSG00000185104 FAF1 -562827 sc-eQTL 3.51e-01 -0.115 0.124 0.883 MAIT L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 3.53e-01 -0.124 0.133 0.882 NK_CD56bright L2
ENSG00000123091 RNF11 -838833 sc-eQTL 8.82e-01 0.0198 0.133 0.882 NK_CD56bright L2
ENSG00000185104 FAF1 -562827 sc-eQTL 2.38e-01 -0.146 0.124 0.882 NK_CD56bright L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 9.75e-01 -0.00372 0.118 0.884 NK_CD56dim L2
ENSG00000123091 RNF11 -838833 sc-eQTL 5.10e-01 -0.0792 0.12 0.884 NK_CD56dim L2
ENSG00000185104 FAF1 -562827 sc-eQTL 3.80e-02 -0.215 0.103 0.884 NK_CD56dim L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 3.90e-01 -0.12 0.139 0.879 NK_HLA L2
ENSG00000123091 RNF11 -838833 sc-eQTL 9.81e-01 -0.00328 0.138 0.879 NK_HLA L2
ENSG00000185104 FAF1 -562827 sc-eQTL 1.00e+00 2.21e-06 0.131 0.879 NK_HLA L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 1.99e-01 -0.15 0.116 0.884 NK_cytokine L2
ENSG00000123091 RNF11 -838833 sc-eQTL 2.32e-01 0.151 0.126 0.884 NK_cytokine L2
ENSG00000185104 FAF1 -562827 sc-eQTL 8.92e-01 0.0138 0.102 0.884 NK_cytokine L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 8.98e-01 0.0163 0.128 0.881 PB L2
ENSG00000123091 RNF11 -838833 sc-eQTL 5.36e-01 0.109 0.175 0.881 PB L2
ENSG00000185104 FAF1 -562827 sc-eQTL 7.49e-02 -0.302 0.168 0.881 PB L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 5.44e-01 -0.0656 0.108 0.887 Pro_T L2
ENSG00000123091 RNF11 -838833 sc-eQTL 2.77e-01 0.149 0.137 0.887 Pro_T L2
ENSG00000185104 FAF1 -562827 sc-eQTL 9.15e-01 0.012 0.112 0.887 Pro_T L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 9.05e-01 0.015 0.125 0.885 Treg L2
ENSG00000123091 RNF11 -838833 sc-eQTL 4.54e-01 0.0997 0.133 0.885 Treg L2
ENSG00000185104 FAF1 -562827 sc-eQTL 5.55e-01 -0.0705 0.119 0.885 Treg L2
ENSG00000085831 TTC39A -947676 sc-eQTL 4.04e-01 0.0356 0.0425 0.876 cDC L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 1.87e-01 0.181 0.137 0.876 cDC L2
ENSG00000123091 RNF11 -838833 sc-eQTL 5.42e-01 -0.0867 0.142 0.876 cDC L2
ENSG00000185104 FAF1 -562827 sc-eQTL 8.86e-01 0.0184 0.128 0.876 cDC L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 7.34e-01 -0.0427 0.125 0.885 cMono_IL1B L2
ENSG00000123091 RNF11 -838833 sc-eQTL 8.02e-02 0.143 0.0816 0.885 cMono_IL1B L2
ENSG00000185104 FAF1 -562827 sc-eQTL 4.10e-02 0.233 0.113 0.885 cMono_IL1B L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 5.74e-01 -0.0778 0.138 0.885 cMono_S100A L2
ENSG00000123091 RNF11 -838833 sc-eQTL 5.55e-01 -0.0643 0.109 0.885 cMono_S100A L2
ENSG00000185104 FAF1 -562827 sc-eQTL 3.93e-01 0.112 0.131 0.885 cMono_S100A L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 2.70e-01 -0.193 0.174 0.888 gdT L2
ENSG00000123091 RNF11 -838833 sc-eQTL 1.47e-02 0.418 0.169 0.888 gdT L2
ENSG00000185104 FAF1 -562827 sc-eQTL 1.07e-01 -0.271 0.167 0.888 gdT L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 4.06e-01 0.106 0.127 0.884 intMono L2
ENSG00000123091 RNF11 -838833 sc-eQTL 7.98e-01 -0.0323 0.126 0.884 intMono L2
ENSG00000185104 FAF1 -562827 sc-eQTL 6.65e-01 0.0578 0.133 0.884 intMono L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 7.91e-01 -0.0355 0.134 0.885 ncMono L2
ENSG00000123091 RNF11 -838833 sc-eQTL 1.52e-01 0.181 0.126 0.885 ncMono L2
ENSG00000185104 FAF1 -562827 sc-eQTL 1.70e-01 0.155 0.113 0.885 ncMono L2
ENSG00000085831 TTC39A -947676 sc-eQTL 6.67e-01 0.0526 0.122 0.884 pDC L2
ENSG00000123080 CDKN2C -563305 sc-eQTL 2.45e-01 0.151 0.13 0.884 pDC L2
ENSG00000123091 RNF11 -838833 sc-eQTL 8.11e-02 -0.197 0.112 0.884 pDC L2
ENSG00000185104 FAF1 -562827 sc-eQTL 3.71e-01 -0.139 0.155 0.884 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123080 CDKN2C -563305 sc-eQTL 4.46e-01 -0.101 0.132 0.885 B_Memory LOneK1K
ENSG00000123091 RNF11 -838833 sc-eQTL 8.77e-01 0.0145 0.0938 0.885 B_Memory LOneK1K
ENSG00000185104 FAF1 -562827 sc-eQTL 2.92e-01 -0.124 0.117 0.885 B_Memory LOneK1K
ENSG00000123080 CDKN2C -563305 sc-eQTL 6.91e-01 -0.0524 0.132 0.885 B_Naive LOneK1K
ENSG00000123091 RNF11 -838833 sc-eQTL 2.88e-01 -0.117 0.11 0.885 B_Naive LOneK1K
ENSG00000185104 FAF1 -562827 sc-eQTL 9.27e-01 0.00977 0.107 0.885 B_Naive LOneK1K
ENSG00000123080 CDKN2C -563305 sc-eQTL 4.03e-01 -0.1 0.12 0.885 CD14_Mono LOneK1K
ENSG00000123091 RNF11 -838833 sc-eQTL 3.07e-01 0.08 0.0781 0.885 CD14_Mono LOneK1K
ENSG00000185104 FAF1 -562827 sc-eQTL 1.77e-02 0.259 0.108 0.885 CD14_Mono LOneK1K
ENSG00000123080 CDKN2C -563305 sc-eQTL 8.19e-01 0.0299 0.131 0.884 CD16_Mono LOneK1K
ENSG00000123091 RNF11 -838833 sc-eQTL 6.80e-01 0.0468 0.113 0.884 CD16_Mono LOneK1K
ENSG00000185104 FAF1 -562827 sc-eQTL 2.06e-01 0.131 0.103 0.884 CD16_Mono LOneK1K
ENSG00000123080 CDKN2C -563305 sc-eQTL 1.26e-01 -0.168 0.109 0.884 NK_CD56dim LOneK1K
ENSG00000123091 RNF11 -838833 sc-eQTL 5.65e-01 -0.0581 0.101 0.884 NK_CD56dim LOneK1K
ENSG00000185104 FAF1 -562827 sc-eQTL 6.84e-02 -0.162 0.0882 0.884 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000123080 CDKN2C -563305 eQTL 6.34e-49 -0.6 0.0385 0.0 0.0 0.104
ENSG00000185104 FAF1 -562827 eQTL 0.00331 0.0662 0.0225 0.0 0.0 0.104
ENSG00000232027 AL671986.1 -974830 eQTL 0.0994 -0.0955 0.0579 0.00113 0.0 0.104

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000123080 CDKN2C -563305 4.89e-07 1.51e-07 6.72e-08 2.53e-07 1.07e-07 1.13e-07 2.4e-07 5.82e-08 1.66e-07 1.05e-07 1.76e-07 1.22e-07 2.55e-07 8.15e-08 5.97e-08 8.71e-08 5.27e-08 1.8e-07 7.36e-08 8.52e-08 1.27e-07 1.7e-07 1.69e-07 4.07e-08 2.37e-07 1.31e-07 1.29e-07 1.26e-07 1.32e-07 1.33e-07 1.22e-07 8.25e-08 4.76e-08 9.9e-08 1.16e-07 3.24e-08 6.04e-08 6.1e-08 5.78e-08 8.09e-08 2.87e-08 1.52e-07 3.09e-08 1.8e-08 1.08e-07 8.42e-09 7.52e-08 2.75e-09 4.67e-08