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Genes within 1Mb (chr1:48902009:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 429801 sc-eQTL 9.77e-01 0.00335 0.116 0.848 B L1
ENSG00000162373 BEND5 125040 sc-eQTL 4.20e-03 -0.19 0.0658 0.848 B L1
ENSG00000132122 SPATA6 429801 sc-eQTL 4.84e-01 -0.0829 0.118 0.848 CD4T L1
ENSG00000162373 BEND5 125040 sc-eQTL 3.64e-03 -0.303 0.103 0.848 CD4T L1
ENSG00000162373 BEND5 125040 sc-eQTL 6.67e-01 0.0297 0.0689 0.848 CD8T L1
ENSG00000132122 SPATA6 429801 sc-eQTL 6.86e-01 -0.0494 0.122 0.849 DC L1
ENSG00000162373 BEND5 125040 sc-eQTL 4.86e-01 0.0722 0.103 0.849 DC L1
ENSG00000132122 SPATA6 429801 sc-eQTL 1.37e-01 -0.129 0.0866 0.848 Mono L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 429801 sc-eQTL 6.55e-01 0.0472 0.106 0.844 B_Activated L2
ENSG00000162373 BEND5 125040 sc-eQTL 6.54e-02 -0.233 0.125 0.844 B_Activated L2
ENSG00000132122 SPATA6 429801 sc-eQTL 7.95e-01 -0.0304 0.117 0.848 B_Intermediate L2
ENSG00000162373 BEND5 125040 sc-eQTL 1.08e-02 -0.27 0.105 0.848 B_Intermediate L2
ENSG00000132122 SPATA6 429801 sc-eQTL 1.05e-01 0.174 0.107 0.847 B_Memory L2
ENSG00000162373 BEND5 125040 sc-eQTL 3.25e-01 -0.123 0.124 0.847 B_Memory L2
ENSG00000132122 SPATA6 429801 sc-eQTL 4.34e-01 -0.0949 0.121 0.848 B_Naive1 L2
ENSG00000162373 BEND5 125040 sc-eQTL 8.74e-02 -0.137 0.0799 0.848 B_Naive1 L2
ENSG00000132122 SPATA6 429801 sc-eQTL 9.18e-01 -0.0129 0.125 0.848 B_Naive2 L2
ENSG00000162373 BEND5 125040 sc-eQTL 1.29e-01 -0.141 0.0925 0.848 B_Naive2 L2
ENSG00000132122 SPATA6 429801 sc-eQTL 5.72e-01 -0.0633 0.112 0.857 CD4_CTL L2
ENSG00000162373 BEND5 125040 sc-eQTL 8.00e-02 -0.151 0.0857 0.857 CD4_CTL L2
ENSG00000132122 SPATA6 429801 sc-eQTL 3.41e-01 -0.117 0.123 0.848 CD4_Naive L2
ENSG00000162373 BEND5 125040 sc-eQTL 4.76e-02 -0.234 0.117 0.848 CD4_Naive L2
ENSG00000132122 SPATA6 429801 sc-eQTL 2.81e-01 0.129 0.119 0.848 CD4_TCM L2
ENSG00000162373 BEND5 125040 sc-eQTL 7.05e-08 -0.64 0.115 0.848 CD4_TCM L2
ENSG00000132122 SPATA6 429801 sc-eQTL 9.48e-01 -0.00831 0.127 0.848 CD4_TEM L2
ENSG00000162373 BEND5 125040 sc-eQTL 5.17e-02 -0.204 0.104 0.848 CD4_TEM L2
ENSG00000162373 BEND5 125040 sc-eQTL 9.90e-02 -0.159 0.0958 0.848 CD8_CTL L2
ENSG00000162373 BEND5 125040 sc-eQTL 2.63e-01 0.127 0.113 0.848 CD8_Naive L2
ENSG00000162373 BEND5 125040 sc-eQTL 4.79e-01 -0.0886 0.125 0.847 CD8_TCM L2
ENSG00000162373 BEND5 125040 sc-eQTL 9.81e-01 -0.00243 0.103 0.858 CD8_TEM L2
ENSG00000132122 SPATA6 429801 sc-eQTL 5.17e-01 -0.0644 0.0991 0.852 PB L2
ENSG00000162373 BEND5 125040 sc-eQTL 1.74e-01 -0.191 0.14 0.852 PB L2
ENSG00000132122 SPATA6 429801 sc-eQTL 2.78e-02 0.235 0.106 0.848 Treg L2
ENSG00000162373 BEND5 125040 sc-eQTL 1.00e-03 -0.344 0.103 0.848 Treg L2
ENSG00000132122 SPATA6 429801 sc-eQTL 2.22e-01 -0.155 0.127 0.849 cDC L2
ENSG00000162373 BEND5 125040 sc-eQTL 2.89e-02 0.224 0.102 0.849 cDC L2
ENSG00000132122 SPATA6 429801 sc-eQTL 8.58e-01 0.0188 0.105 0.848 cMono_IL1B L2
ENSG00000132122 SPATA6 429801 sc-eQTL 2.57e-02 -0.253 0.112 0.848 cMono_S100A L2
ENSG00000132122 SPATA6 429801 sc-eQTL 5.78e-01 -0.0676 0.121 0.842 intMono L2
ENSG00000132122 SPATA6 429801 sc-eQTL 9.79e-01 0.00259 0.0999 0.848 ncMono L2
ENSG00000132122 SPATA6 429801 sc-eQTL 7.58e-01 0.0403 0.131 0.85 pDC L2
ENSG00000162373 BEND5 125040 sc-eQTL 4.61e-01 -0.0918 0.124 0.85 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 429801 sc-eQTL 4.10e-01 0.098 0.119 0.848 B_Memory LOneK1K
ENSG00000162373 BEND5 125040 sc-eQTL 1.37e-02 -0.245 0.0984 0.848 B_Memory LOneK1K
ENSG00000132122 SPATA6 429801 sc-eQTL 4.61e-01 -0.0908 0.123 0.848 B_Naive LOneK1K
ENSG00000162373 BEND5 125040 sc-eQTL 5.17e-02 -0.137 0.0703 0.848 B_Naive LOneK1K
ENSG00000132122 SPATA6 429801 sc-eQTL 2.08e-01 -0.127 0.101 0.848 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 429801 sc-eQTL 6.86e-01 -0.0359 0.0886 0.847 CD16_Mono LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162373 BEND5 125040 eQTL 4.23e-09 -0.124 0.0208 0.00102 0.0 0.184

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162373 BEND5 125040 4.33e-06 4.93e-06 7.64e-07 2.68e-06 1.1e-06 1.27e-06 3.59e-06 1.01e-06 4.99e-06 2.35e-06 5.18e-06 3.52e-06 7.07e-06 2.34e-06 1.36e-06 3.03e-06 2.09e-06 3.05e-06 1.41e-06 9.53e-07 2.41e-06 4.73e-06 3.63e-06 1.55e-06 6.5e-06 1.52e-06 2.35e-06 1.51e-06 4.26e-06 4.36e-06 2.75e-06 5.93e-07 6.49e-07 1.85e-06 2.13e-06 9.44e-07 9.82e-07 4.72e-07 1.08e-06 3.81e-07 3.2e-07 6.1e-06 4.47e-07 1.51e-07 4.13e-07 3.93e-07 7.99e-07 2.33e-07 1.76e-07