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Genes within 1Mb (chr1:48565566:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 93358 sc-eQTL 1.89e-01 -0.118 0.0896 0.419 B L1
ENSG00000162373 BEND5 -211403 sc-eQTL 8.20e-01 -0.0118 0.0519 0.419 B L1
ENSG00000132122 SPATA6 93358 sc-eQTL 2.25e-01 -0.109 0.0893 0.419 CD4T L1
ENSG00000162373 BEND5 -211403 sc-eQTL 7.55e-01 -0.0248 0.0796 0.419 CD4T L1
ENSG00000162373 BEND5 -211403 sc-eQTL 8.32e-01 -0.011 0.052 0.419 CD8T L1
ENSG00000132122 SPATA6 93358 sc-eQTL 4.10e-01 -0.0771 0.0935 0.412 DC L1
ENSG00000162373 BEND5 -211403 sc-eQTL 8.63e-01 0.0137 0.0794 0.412 DC L1
ENSG00000132122 SPATA6 93358 sc-eQTL 9.62e-01 0.0032 0.0669 0.419 Mono L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 93358 sc-eQTL 9.12e-01 0.00938 0.0847 0.429 B_Activated L2
ENSG00000162373 BEND5 -211403 sc-eQTL 1.66e-02 0.242 0.1 0.429 B_Activated L2
ENSG00000132122 SPATA6 93358 sc-eQTL 4.31e-01 -0.0723 0.0916 0.421 B_Intermediate L2
ENSG00000162373 BEND5 -211403 sc-eQTL 2.05e-01 -0.106 0.083 0.421 B_Intermediate L2
ENSG00000132122 SPATA6 93358 sc-eQTL 8.01e-02 -0.144 0.0818 0.418 B_Memory L2
ENSG00000162373 BEND5 -211403 sc-eQTL 3.91e-01 -0.0818 0.0951 0.418 B_Memory L2
ENSG00000132122 SPATA6 93358 sc-eQTL 3.96e-02 -0.191 0.0924 0.419 B_Naive1 L2
ENSG00000162373 BEND5 -211403 sc-eQTL 3.69e-01 -0.0557 0.0619 0.419 B_Naive1 L2
ENSG00000132122 SPATA6 93358 sc-eQTL 2.04e-01 -0.122 0.0956 0.418 B_Naive2 L2
ENSG00000162373 BEND5 -211403 sc-eQTL 5.87e-01 0.0388 0.0714 0.418 B_Naive2 L2
ENSG00000132122 SPATA6 93358 sc-eQTL 7.17e-01 -0.0295 0.0814 0.411 CD4_CTL L2
ENSG00000162373 BEND5 -211403 sc-eQTL 8.10e-01 0.0151 0.0627 0.411 CD4_CTL L2
ENSG00000132122 SPATA6 93358 sc-eQTL 5.02e-01 -0.0628 0.0933 0.419 CD4_Naive L2
ENSG00000162373 BEND5 -211403 sc-eQTL 7.87e-01 -0.0243 0.0898 0.419 CD4_Naive L2
ENSG00000132122 SPATA6 93358 sc-eQTL 2.78e-01 -0.0986 0.0906 0.419 CD4_TCM L2
ENSG00000162373 BEND5 -211403 sc-eQTL 2.53e-01 0.106 0.0929 0.419 CD4_TCM L2
ENSG00000132122 SPATA6 93358 sc-eQTL 2.74e-01 -0.105 0.0955 0.419 CD4_TEM L2
ENSG00000162373 BEND5 -211403 sc-eQTL 7.06e-01 0.03 0.0795 0.419 CD4_TEM L2
ENSG00000162373 BEND5 -211403 sc-eQTL 6.96e-01 0.0288 0.0736 0.419 CD8_CTL L2
ENSG00000162373 BEND5 -211403 sc-eQTL 9.59e-01 -0.00446 0.0875 0.419 CD8_Naive L2
ENSG00000162373 BEND5 -211403 sc-eQTL 8.84e-01 0.0133 0.0914 0.414 CD8_TCM L2
ENSG00000162373 BEND5 -211403 sc-eQTL 6.16e-01 0.0397 0.079 0.425 CD8_TEM L2
ENSG00000132122 SPATA6 93358 sc-eQTL 2.44e-01 -0.0938 0.0801 0.43 PB L2
ENSG00000162373 BEND5 -211403 sc-eQTL 6.06e-01 -0.0591 0.114 0.43 PB L2
ENSG00000132122 SPATA6 93358 sc-eQTL 4.78e-03 -0.221 0.0774 0.419 Treg L2
ENSG00000162373 BEND5 -211403 sc-eQTL 2.71e-01 -0.0856 0.0775 0.419 Treg L2
ENSG00000132122 SPATA6 93358 sc-eQTL 6.54e-01 -0.044 0.0981 0.415 cDC L2
ENSG00000162373 BEND5 -211403 sc-eQTL 8.01e-01 0.0201 0.0796 0.415 cDC L2
ENSG00000132122 SPATA6 93358 sc-eQTL 8.78e-01 0.0125 0.0812 0.419 cMono_IL1B L2
ENSG00000132122 SPATA6 93358 sc-eQTL 6.66e-01 0.0376 0.0872 0.419 cMono_S100A L2
ENSG00000132122 SPATA6 93358 sc-eQTL 3.19e-02 -0.199 0.0919 0.416 intMono L2
ENSG00000132122 SPATA6 93358 sc-eQTL 3.24e-01 0.0736 0.0744 0.414 ncMono L2
ENSG00000132122 SPATA6 93358 sc-eQTL 4.27e-01 -0.0774 0.0971 0.427 pDC L2
ENSG00000162373 BEND5 -211403 sc-eQTL 6.19e-01 0.0461 0.0925 0.427 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 93358 sc-eQTL 5.27e-01 -0.0588 0.0928 0.419 B_Memory LOneK1K
ENSG00000162373 BEND5 -211403 sc-eQTL 4.10e-01 -0.0642 0.0778 0.419 B_Memory LOneK1K
ENSG00000132122 SPATA6 93358 sc-eQTL 3.59e-02 -0.197 0.0932 0.419 B_Naive LOneK1K
ENSG00000162373 BEND5 -211403 sc-eQTL 7.63e-01 -0.0164 0.0543 0.419 B_Naive LOneK1K
ENSG00000132122 SPATA6 93358 sc-eQTL 6.28e-01 0.0376 0.0774 0.419 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 93358 sc-eQTL 9.87e-01 0.0011 0.0678 0.418 CD16_Mono LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000132122 SPATA6 93358 eQTL 0.00339 -0.0526 0.0179 0.00161 0.0 0.42
ENSG00000162373 BEND5 -211403 eQTL 0.0389 0.0346 0.0167 0.0 0.0 0.42

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162373 BEND5 -211403 1.81e-06 2.06e-06 2.59e-07 1.27e-06 4.39e-07 6.94e-07 1.31e-06 4.95e-07 1.75e-06 7.72e-07 1.87e-06 1.29e-06 2.72e-06 5.23e-07 3.84e-07 1.2e-06 1.1e-06 1.33e-06 5.66e-07 7.99e-07 6.56e-07 1.94e-06 1.68e-06 9.74e-07 2.5e-06 1.22e-06 1.12e-06 1.06e-06 1.68e-06 1.66e-06 7.57e-07 2.73e-07 3.75e-07 8.88e-07 7.59e-07 6.58e-07 7.33e-07 3.27e-07 6.78e-07 2.17e-07 3.05e-07 2.46e-06 3.9e-07 1.91e-07 3.39e-07 3.21e-07 4.27e-07 2.53e-07 2.27e-07