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Genes within 1Mb (chr1:48488804:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 16596 sc-eQTL 4.77e-01 0.0799 0.112 0.797 B L1
ENSG00000162373 BEND5 -288165 sc-eQTL 5.04e-01 0.0433 0.0647 0.797 B L1
ENSG00000132122 SPATA6 16596 sc-eQTL 5.68e-02 0.211 0.11 0.797 CD4T L1
ENSG00000162373 BEND5 -288165 sc-eQTL 7.34e-01 -0.0336 0.0989 0.797 CD4T L1
ENSG00000162373 BEND5 -288165 sc-eQTL 8.53e-01 0.0118 0.0639 0.797 CD8T L1
ENSG00000132122 SPATA6 16596 sc-eQTL 5.32e-01 -0.071 0.113 0.793 DC L1
ENSG00000162373 BEND5 -288165 sc-eQTL 5.41e-01 0.0589 0.0961 0.793 DC L1
ENSG00000132122 SPATA6 16596 sc-eQTL 6.48e-01 0.0387 0.0845 0.797 Mono L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 16596 sc-eQTL 8.63e-01 -0.018 0.104 0.796 B_Activated L2
ENSG00000162373 BEND5 -288165 sc-eQTL 5.60e-01 0.0729 0.125 0.796 B_Activated L2
ENSG00000132122 SPATA6 16596 sc-eQTL 5.17e-01 0.073 0.112 0.798 B_Intermediate L2
ENSG00000162373 BEND5 -288165 sc-eQTL 2.44e-01 -0.119 0.102 0.798 B_Intermediate L2
ENSG00000132122 SPATA6 16596 sc-eQTL 6.53e-01 0.0462 0.103 0.795 B_Memory L2
ENSG00000162373 BEND5 -288165 sc-eQTL 2.25e-01 -0.144 0.118 0.795 B_Memory L2
ENSG00000132122 SPATA6 16596 sc-eQTL 3.44e-01 -0.11 0.116 0.797 B_Naive1 L2
ENSG00000162373 BEND5 -288165 sc-eQTL 1.91e-01 0.101 0.0769 0.797 B_Naive1 L2
ENSG00000132122 SPATA6 16596 sc-eQTL 2.92e-01 0.126 0.119 0.796 B_Naive2 L2
ENSG00000162373 BEND5 -288165 sc-eQTL 5.37e-01 -0.0549 0.0888 0.796 B_Naive2 L2
ENSG00000132122 SPATA6 16596 sc-eQTL 2.53e-01 0.119 0.104 0.793 CD4_CTL L2
ENSG00000162373 BEND5 -288165 sc-eQTL 7.54e-01 0.0252 0.0802 0.793 CD4_CTL L2
ENSG00000132122 SPATA6 16596 sc-eQTL 4.96e-01 0.0784 0.115 0.797 CD4_Naive L2
ENSG00000162373 BEND5 -288165 sc-eQTL 9.53e-01 0.00653 0.111 0.797 CD4_Naive L2
ENSG00000132122 SPATA6 16596 sc-eQTL 1.34e-01 0.167 0.111 0.797 CD4_TCM L2
ENSG00000162373 BEND5 -288165 sc-eQTL 5.69e-02 -0.217 0.114 0.797 CD4_TCM L2
ENSG00000132122 SPATA6 16596 sc-eQTL 7.63e-02 0.211 0.118 0.797 CD4_TEM L2
ENSG00000162373 BEND5 -288165 sc-eQTL 5.35e-02 -0.19 0.098 0.797 CD4_TEM L2
ENSG00000162373 BEND5 -288165 sc-eQTL 9.06e-01 -0.0105 0.0887 0.797 CD8_CTL L2
ENSG00000162373 BEND5 -288165 sc-eQTL 7.98e-01 0.0272 0.106 0.797 CD8_Naive L2
ENSG00000162373 BEND5 -288165 sc-eQTL 5.69e-01 0.0644 0.113 0.792 CD8_TCM L2
ENSG00000162373 BEND5 -288165 sc-eQTL 8.14e-01 -0.023 0.0976 0.811 CD8_TEM L2
ENSG00000132122 SPATA6 16596 sc-eQTL 3.40e-01 0.0952 0.0993 0.796 PB L2
ENSG00000162373 BEND5 -288165 sc-eQTL 3.24e-01 -0.14 0.141 0.796 PB L2
ENSG00000132122 SPATA6 16596 sc-eQTL 9.40e-02 0.161 0.0959 0.797 Treg L2
ENSG00000162373 BEND5 -288165 sc-eQTL 7.84e-01 -0.0262 0.0952 0.797 Treg L2
ENSG00000132122 SPATA6 16596 sc-eQTL 2.03e-01 -0.15 0.118 0.788 cDC L2
ENSG00000162373 BEND5 -288165 sc-eQTL 3.54e-02 0.2 0.0946 0.788 cDC L2
ENSG00000132122 SPATA6 16596 sc-eQTL 6.91e-01 0.0404 0.102 0.797 cMono_IL1B L2
ENSG00000132122 SPATA6 16596 sc-eQTL 5.61e-01 -0.0634 0.109 0.797 cMono_S100A L2
ENSG00000132122 SPATA6 16596 sc-eQTL 2.06e-01 -0.145 0.114 0.8 intMono L2
ENSG00000132122 SPATA6 16596 sc-eQTL 4.37e-01 0.072 0.0925 0.801 ncMono L2
ENSG00000132122 SPATA6 16596 sc-eQTL 9.49e-01 0.00787 0.122 0.782 pDC L2
ENSG00000162373 BEND5 -288165 sc-eQTL 6.21e-01 0.0575 0.116 0.782 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 16596 sc-eQTL 6.36e-01 0.0542 0.114 0.797 B_Memory LOneK1K
ENSG00000162373 BEND5 -288165 sc-eQTL 8.98e-02 -0.162 0.0952 0.797 B_Memory LOneK1K
ENSG00000132122 SPATA6 16596 sc-eQTL 8.37e-01 -0.0243 0.118 0.797 B_Naive LOneK1K
ENSG00000162373 BEND5 -288165 sc-eQTL 3.13e-01 0.0688 0.068 0.797 B_Naive LOneK1K
ENSG00000132122 SPATA6 16596 sc-eQTL 6.48e-01 0.0448 0.0978 0.797 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 16596 sc-eQTL 7.66e-01 -0.0251 0.0843 0.8 CD16_Mono LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117834 SLC5A9 266119 eQTL 0.00119 0.0644 0.0198 0.00139 0.00511 0.195
ENSG00000132122 SPATA6 16596 eQTL 0.000984 0.0763 0.0231 0.0 0.0 0.195
ENSG00000272491 AL109659.2 259243 eQTL 0.000792 0.134 0.0399 0.0 0.0 0.195

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117834 SLC5A9 266119 4.04e-06 4.7e-06 6.67e-07 2.42e-06 8e-07 9.33e-07 2.38e-06 9.98e-07 3.53e-06 1.61e-06 3.7e-06 2.5e-06 4.48e-06 1.37e-06 1.3e-06 2.07e-06 1.79e-06 2.26e-06 1.27e-06 9.7e-07 1.9e-06 3.58e-06 3.38e-06 1.64e-06 4.62e-06 1.23e-06 1.77e-06 1.82e-06 3.27e-06 2.49e-06 1.98e-06 5.09e-07 7.75e-07 1.31e-06 1.81e-06 9.52e-07 9.07e-07 4.92e-07 1.31e-06 3.42e-07 2.54e-07 4.22e-06 4.2e-07 1.82e-07 3.41e-07 3.72e-07 7.1e-07 3.18e-07 3.4e-07
ENSG00000132122 SPATA6 16596 3.63e-05 3.46e-05 6.4e-06 1.61e-05 6.17e-06 1.52e-05 4.59e-05 5.07e-06 3.38e-05 1.69e-05 4.09e-05 1.86e-05 5.21e-05 1.46e-05 7.62e-06 2.07e-05 1.84e-05 2.61e-05 8.46e-06 7.09e-06 1.64e-05 3.5e-05 3.33e-05 9.6e-06 4.66e-05 8.28e-06 1.6e-05 1.43e-05 3.39e-05 2.5e-05 2.22e-05 1.61e-06 2.83e-06 7.58e-06 1.24e-05 6.12e-06 3.26e-06 3.2e-06 5.18e-06 3.56e-06 1.74e-06 3.92e-05 3.46e-06 4.08e-07 2.59e-06 4.6e-06 4.42e-06 1.71e-06 1.52e-06
ENSG00000235105 \N 52837 2.02e-05 2.58e-05 3.08e-06 1.31e-05 3.29e-06 9.05e-06 2.75e-05 3.73e-06 2.17e-05 1.02e-05 2.63e-05 1.05e-05 3.55e-05 8.94e-06 5.37e-06 1.18e-05 1.04e-05 1.73e-05 5.66e-06 4.99e-06 9.16e-06 2.16e-05 1.98e-05 5.86e-06 3.04e-05 5.34e-06 9.54e-06 9.46e-06 2.04e-05 1.58e-05 1.29e-05 1.67e-06 1.91e-06 5.15e-06 8.98e-06 4.57e-06 2.15e-06 2.72e-06 3.52e-06 2.88e-06 1.48e-06 2.57e-05 2.7e-06 2.96e-07 1.83e-06 2.81e-06 3.25e-06 1.51e-06 1.32e-06
ENSG00000272491 AL109659.2 259243 4.39e-06 4.77e-06 6.93e-07 2.44e-06 8.14e-07 1.09e-06 2.69e-06 9.93e-07 3.9e-06 1.7e-06 4.22e-06 2.72e-06 5.05e-06 1.62e-06 1.42e-06 2.23e-06 1.79e-06 2.37e-06 1.41e-06 9.88e-07 2.2e-06 3.96e-06 3.24e-06 1.82e-06 4.77e-06 1.17e-06 1.9e-06 1.71e-06 3.74e-06 2.75e-06 2.02e-06 5.42e-07 8.13e-07 1.32e-06 1.92e-06 8.84e-07 9.38e-07 5.11e-07 1.39e-06 4.29e-07 2.23e-07 4.74e-06 3.83e-07 1.66e-07 3.45e-07 3.61e-07 6.81e-07 4.1e-07 3.26e-07