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Genes within 1Mb (chr1:48462250:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -9958 sc-eQTL 6.65e-01 0.0384 0.0885 0.436 B L1
ENSG00000162373 BEND5 -314719 sc-eQTL 8.32e-01 -0.0108 0.0511 0.436 B L1
ENSG00000132122 SPATA6 -9958 sc-eQTL 9.13e-01 0.00967 0.0882 0.436 CD4T L1
ENSG00000162373 BEND5 -314719 sc-eQTL 8.97e-01 -0.0102 0.0783 0.436 CD4T L1
ENSG00000162373 BEND5 -314719 sc-eQTL 9.93e-01 0.00047 0.0523 0.436 CD8T L1
ENSG00000132122 SPATA6 -9958 sc-eQTL 7.73e-01 -0.0258 0.0896 0.439 DC L1
ENSG00000162373 BEND5 -314719 sc-eQTL 4.45e-01 -0.058 0.0758 0.439 DC L1
ENSG00000132122 SPATA6 -9958 sc-eQTL 3.75e-01 0.0578 0.065 0.436 Mono L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -9958 sc-eQTL 7.03e-01 0.0313 0.082 0.436 B_Activated L2
ENSG00000162373 BEND5 -314719 sc-eQTL 8.17e-01 -0.0228 0.0984 0.436 B_Activated L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 3.90e-01 -0.0765 0.0887 0.438 B_Intermediate L2
ENSG00000162373 BEND5 -314719 sc-eQTL 1.59e-01 -0.114 0.0804 0.438 B_Intermediate L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 5.06e-01 0.0538 0.0807 0.435 B_Memory L2
ENSG00000162373 BEND5 -314719 sc-eQTL 4.97e-01 -0.0635 0.0933 0.435 B_Memory L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 8.95e-01 -0.0119 0.0907 0.436 B_Naive1 L2
ENSG00000162373 BEND5 -314719 sc-eQTL 8.42e-01 -0.012 0.0603 0.436 B_Naive1 L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 4.14e-01 0.0773 0.0944 0.436 B_Naive2 L2
ENSG00000162373 BEND5 -314719 sc-eQTL 4.88e-01 -0.0488 0.0703 0.436 B_Naive2 L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 4.26e-02 0.162 0.0791 0.432 CD4_CTL L2
ENSG00000162373 BEND5 -314719 sc-eQTL 2.13e-01 0.0767 0.0614 0.432 CD4_CTL L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 4.13e-01 -0.0744 0.0906 0.436 CD4_Naive L2
ENSG00000162373 BEND5 -314719 sc-eQTL 5.48e-01 -0.0524 0.0872 0.436 CD4_Naive L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 2.17e-01 0.111 0.0898 0.436 CD4_TCM L2
ENSG00000162373 BEND5 -314719 sc-eQTL 9.62e-01 -0.00437 0.0925 0.436 CD4_TCM L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 6.52e-01 -0.0429 0.0948 0.436 CD4_TEM L2
ENSG00000162373 BEND5 -314719 sc-eQTL 2.14e-01 0.0977 0.0784 0.436 CD4_TEM L2
ENSG00000162373 BEND5 -314719 sc-eQTL 5.45e-01 -0.0442 0.0729 0.436 CD8_CTL L2
ENSG00000162373 BEND5 -314719 sc-eQTL 7.61e-01 0.026 0.0856 0.436 CD8_Naive L2
ENSG00000162373 BEND5 -314719 sc-eQTL 4.20e-02 0.189 0.0923 0.424 CD8_TCM L2
ENSG00000162373 BEND5 -314719 sc-eQTL 2.67e-01 -0.0838 0.0753 0.447 CD8_TEM L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 2.08e-01 -0.0986 0.0779 0.411 PB L2
ENSG00000162373 BEND5 -314719 sc-eQTL 9.54e-01 0.00648 0.111 0.411 PB L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 9.83e-01 -0.00165 0.0772 0.436 Treg L2
ENSG00000162373 BEND5 -314719 sc-eQTL 7.02e-01 -0.0292 0.0761 0.436 Treg L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 9.89e-01 -0.00134 0.0936 0.444 cDC L2
ENSG00000162373 BEND5 -314719 sc-eQTL 5.77e-02 0.144 0.0751 0.444 cDC L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 1.78e-01 0.107 0.0792 0.436 cMono_IL1B L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 7.64e-01 -0.0257 0.0854 0.436 cMono_S100A L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 6.65e-01 -0.0395 0.0911 0.436 intMono L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 1.60e-01 0.103 0.0732 0.439 ncMono L2
ENSG00000132122 SPATA6 -9958 sc-eQTL 6.18e-01 -0.046 0.0921 0.46 pDC L2
ENSG00000162373 BEND5 -314719 sc-eQTL 3.13e-01 -0.0884 0.0874 0.46 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -9958 sc-eQTL 9.02e-01 -0.011 0.0891 0.436 B_Memory LOneK1K
ENSG00000162373 BEND5 -314719 sc-eQTL 2.32e-01 -0.0894 0.0745 0.436 B_Memory LOneK1K
ENSG00000132122 SPATA6 -9958 sc-eQTL 6.95e-01 0.0363 0.0924 0.436 B_Naive LOneK1K
ENSG00000162373 BEND5 -314719 sc-eQTL 9.83e-01 -0.00116 0.0533 0.436 B_Naive LOneK1K
ENSG00000132122 SPATA6 -9958 sc-eQTL 3.64e-01 0.0684 0.0751 0.436 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -9958 sc-eQTL 2.46e-01 0.0776 0.0668 0.44 CD16_Mono LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117834 SLC5A9 239565 eQTL 0.000352 0.0562 0.0157 0.0 0.0 0.425
ENSG00000132122 SPATA6 -9958 eQTL 0.145 -0.0268 0.0184 0.001 0.0 0.425
ENSG00000162373 BEND5 -314719 eQTL 0.0196 0.0399 0.0171 0.0 0.0 0.425
ENSG00000272491 AL109659.2 232689 eQTL 2.02e-16 0.257 0.0307 0.0271 0.0261 0.425

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117834 SLC5A9 239565 1.57e-06 1.52e-06 2.75e-07 1.27e-06 4.75e-07 6.4e-07 1.25e-06 4.41e-07 1.75e-06 7.2e-07 1.86e-06 1.29e-06 2.69e-06 4.11e-07 3.28e-07 1.06e-06 1.04e-06 1.29e-06 5.23e-07 6.51e-07 6.41e-07 1.96e-06 1.58e-06 9.69e-07 2.43e-06 1.07e-06 1.05e-06 1.01e-06 1.73e-06 1.4e-06 7.58e-07 2.46e-07 3.58e-07 8e-07 7.35e-07 6.4e-07 6.85e-07 3.66e-07 5.35e-07 2.26e-07 2.88e-07 2.2e-06 3.43e-07 1.66e-07 3.83e-07 3.24e-07 3.99e-07 1.97e-07 2.44e-07
ENSG00000272491 AL109659.2 232689 1.65e-06 1.84e-06 2.98e-07 1.22e-06 4.49e-07 6.48e-07 1.21e-06 4.99e-07 1.76e-06 6.77e-07 1.91e-06 1.29e-06 2.73e-06 4.82e-07 3.68e-07 1.15e-06 1.06e-06 1.34e-06 5.54e-07 7.64e-07 6.24e-07 1.95e-06 1.56e-06 9.16e-07 2.43e-06 1.13e-06 1.14e-06 1.06e-06 1.62e-06 1.5e-06 7.56e-07 2.81e-07 3.84e-07 8.83e-07 8.1e-07 6.4e-07 6.55e-07 3.35e-07 5.47e-07 2.13e-07 3.04e-07 2.41e-06 3.52e-07 1.91e-07 3.38e-07 3.32e-07 4.08e-07 2.49e-07 2.14e-07