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Genes within 1Mb (chr1:48393469:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -78739 sc-eQTL 6.55e-01 -0.0618 0.138 0.098 B L1
ENSG00000162373 BEND5 -383500 sc-eQTL 5.88e-01 -0.0433 0.0798 0.098 B L1
ENSG00000132122 SPATA6 -78739 sc-eQTL 1.39e-01 -0.198 0.133 0.098 CD4T L1
ENSG00000162373 BEND5 -383500 sc-eQTL 1.01e-01 -0.195 0.118 0.098 CD4T L1
ENSG00000162373 BEND5 -383500 sc-eQTL 6.10e-01 0.0407 0.0797 0.098 CD8T L1
ENSG00000132122 SPATA6 -78739 sc-eQTL 6.73e-01 0.0593 0.14 0.097 DC L1
ENSG00000162373 BEND5 -383500 sc-eQTL 8.46e-01 0.0231 0.119 0.097 DC L1
ENSG00000132122 SPATA6 -78739 sc-eQTL 6.01e-01 0.0531 0.101 0.098 Mono L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -78739 sc-eQTL 9.45e-01 -0.00876 0.126 0.099 B_Activated L2
ENSG00000162373 BEND5 -383500 sc-eQTL 6.15e-01 -0.076 0.151 0.099 B_Activated L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 4.55e-01 -0.103 0.138 0.099 B_Intermediate L2
ENSG00000162373 BEND5 -383500 sc-eQTL 2.48e-01 -0.145 0.125 0.099 B_Intermediate L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 7.26e-01 -0.0446 0.127 0.097 B_Memory L2
ENSG00000162373 BEND5 -383500 sc-eQTL 6.12e-01 0.0747 0.147 0.097 B_Memory L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 6.09e-01 -0.0723 0.141 0.098 B_Naive1 L2
ENSG00000162373 BEND5 -383500 sc-eQTL 7.53e-01 -0.0296 0.0938 0.098 B_Naive1 L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 7.11e-01 -0.054 0.146 0.097 B_Naive2 L2
ENSG00000162373 BEND5 -383500 sc-eQTL 7.66e-01 -0.0323 0.108 0.097 B_Naive2 L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 9.60e-02 0.215 0.128 0.091 CD4_CTL L2
ENSG00000162373 BEND5 -383500 sc-eQTL 2.20e-01 -0.122 0.0992 0.091 CD4_CTL L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 1.05e-02 -0.355 0.137 0.098 CD4_Naive L2
ENSG00000162373 BEND5 -383500 sc-eQTL 3.15e-01 -0.135 0.134 0.098 CD4_Naive L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 7.59e-01 0.0422 0.137 0.098 CD4_TCM L2
ENSG00000162373 BEND5 -383500 sc-eQTL 3.12e-03 -0.412 0.138 0.098 CD4_TCM L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 2.22e-01 0.177 0.145 0.098 CD4_TEM L2
ENSG00000162373 BEND5 -383500 sc-eQTL 7.82e-01 0.0334 0.12 0.098 CD4_TEM L2
ENSG00000162373 BEND5 -383500 sc-eQTL 5.69e-01 0.0638 0.112 0.098 CD8_CTL L2
ENSG00000162373 BEND5 -383500 sc-eQTL 5.05e-01 0.0917 0.137 0.098 CD8_Naive L2
ENSG00000162373 BEND5 -383500 sc-eQTL 6.91e-02 0.267 0.146 0.095 CD8_TCM L2
ENSG00000162373 BEND5 -383500 sc-eQTL 3.36e-01 -0.114 0.118 0.098 CD8_TEM L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 5.29e-01 -0.0814 0.129 0.078 PB L2
ENSG00000162373 BEND5 -383500 sc-eQTL 3.48e-01 -0.172 0.183 0.078 PB L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 5.42e-01 0.0727 0.119 0.098 Treg L2
ENSG00000162373 BEND5 -383500 sc-eQTL 2.73e-01 -0.129 0.117 0.098 Treg L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 7.64e-01 -0.0438 0.146 0.095 cDC L2
ENSG00000162373 BEND5 -383500 sc-eQTL 8.96e-01 -0.0155 0.118 0.095 cDC L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 4.04e-01 0.103 0.123 0.098 cMono_IL1B L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 6.59e-01 -0.0591 0.134 0.098 cMono_S100A L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 6.78e-01 0.0583 0.14 0.096 intMono L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 5.55e-01 0.0665 0.112 0.097 ncMono L2
ENSG00000132122 SPATA6 -78739 sc-eQTL 6.89e-01 0.0577 0.144 0.11 pDC L2
ENSG00000162373 BEND5 -383500 sc-eQTL 7.21e-01 0.049 0.137 0.11 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -78739 sc-eQTL 7.60e-01 0.0424 0.139 0.098 B_Memory LOneK1K
ENSG00000162373 BEND5 -383500 sc-eQTL 9.75e-01 -0.00364 0.116 0.098 B_Memory LOneK1K
ENSG00000132122 SPATA6 -78739 sc-eQTL 5.94e-01 -0.0766 0.143 0.098 B_Naive LOneK1K
ENSG00000162373 BEND5 -383500 sc-eQTL 9.80e-01 -0.00209 0.0827 0.098 B_Naive LOneK1K
ENSG00000132122 SPATA6 -78739 sc-eQTL 7.53e-01 0.0369 0.117 0.098 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -78739 sc-eQTL 4.41e-01 0.0785 0.102 0.099 CD16_Mono LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117834 SLC5A9 170784 eQTL 0.0479 0.058 0.0293 0.0 0.0 0.078
ENSG00000162373 BEND5 -383500 eQTL 0.0351 0.067 0.0317 0.0 0.0 0.078
ENSG00000272491 AL109659.2 163908 eQTL 0.000406 0.208 0.0587 0.0 0.0 0.078

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000272491 AL109659.2 163908 3.59e-06 4.35e-06 6.67e-07 2.14e-06 8.48e-07 8.69e-07 2.41e-06 8.92e-07 3.18e-06 1.7e-06 4.08e-06 2.52e-06 5.6e-06 1.33e-06 9.97e-07 2.11e-06 1.79e-06 2.22e-06 1.49e-06 8.79e-07 1.96e-06 3.79e-06 3.17e-06 1.8e-06 4.69e-06 1.24e-06 1.87e-06 1.57e-06 3.78e-06 2.71e-06 2e-06 5.43e-07 6.49e-07 1.66e-06 1.91e-06 9.23e-07 9.88e-07 4.52e-07 1.31e-06 3.64e-07 2.78e-07 4.29e-06 5.72e-07 1.66e-07 3.46e-07 3.41e-07 8.74e-07 3.18e-07 3.18e-07