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Genes within 1Mb (chr1:48329883:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -142325 sc-eQTL 9.79e-01 0.00269 0.102 0.194 B L1
ENSG00000162368 CMPK1 996086 sc-eQTL 3.21e-02 -0.151 0.0698 0.194 B L1
ENSG00000162373 BEND5 -447086 sc-eQTL 3.81e-01 0.0515 0.0587 0.194 B L1
ENSG00000132122 SPATA6 -142325 sc-eQTL 6.63e-01 0.0439 0.101 0.194 CD4T L1
ENSG00000162368 CMPK1 996086 sc-eQTL 8.12e-01 -0.0161 0.0673 0.194 CD4T L1
ENSG00000162373 BEND5 -447086 sc-eQTL 2.04e-01 -0.114 0.0891 0.194 CD4T L1
ENSG00000162368 CMPK1 996086 sc-eQTL 4.41e-01 -0.0478 0.0618 0.194 CD8T L1
ENSG00000162373 BEND5 -447086 sc-eQTL 9.87e-01 -0.000967 0.0579 0.194 CD8T L1
ENSG00000132122 SPATA6 -142325 sc-eQTL 3.94e-01 -0.0913 0.107 0.191 DC L1
ENSG00000162368 CMPK1 996086 sc-eQTL 9.56e-01 -0.00491 0.0894 0.191 DC L1
ENSG00000162373 BEND5 -447086 sc-eQTL 6.41e-02 0.167 0.0899 0.191 DC L1
ENSG00000132122 SPATA6 -142325 sc-eQTL 3.06e-01 -0.0766 0.0747 0.194 Mono L1
ENSG00000162368 CMPK1 996086 sc-eQTL 5.83e-01 -0.0408 0.0742 0.194 Mono L1
ENSG00000162368 CMPK1 996086 sc-eQTL 8.35e-01 -0.013 0.0623 0.195 NK L1
ENSG00000162368 CMPK1 996086 sc-eQTL 7.19e-01 0.0312 0.0868 0.194 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -142325 sc-eQTL 6.70e-01 0.0413 0.0967 0.202 B_Activated L2
ENSG00000162368 CMPK1 996086 sc-eQTL 4.30e-01 -0.0914 0.116 0.202 B_Activated L2
ENSG00000162373 BEND5 -447086 sc-eQTL 6.68e-01 0.0499 0.116 0.202 B_Activated L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 9.14e-01 -0.0109 0.101 0.193 B_Intermediate L2
ENSG00000162368 CMPK1 996086 sc-eQTL 6.19e-02 -0.159 0.0845 0.193 B_Intermediate L2
ENSG00000162373 BEND5 -447086 sc-eQTL 4.51e-01 0.0694 0.0919 0.193 B_Intermediate L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 4.03e-01 0.0778 0.0929 0.196 B_Memory L2
ENSG00000162368 CMPK1 996086 sc-eQTL 9.36e-02 -0.153 0.0906 0.196 B_Memory L2
ENSG00000162373 BEND5 -447086 sc-eQTL 5.10e-01 0.0709 0.107 0.196 B_Memory L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 3.16e-01 0.106 0.105 0.194 B_Naive1 L2
ENSG00000162368 CMPK1 996086 sc-eQTL 3.18e-02 -0.181 0.0839 0.194 B_Naive1 L2
ENSG00000162373 BEND5 -447086 sc-eQTL 2.18e-01 0.0862 0.0698 0.194 B_Naive1 L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 6.55e-01 -0.0487 0.109 0.195 B_Naive2 L2
ENSG00000162368 CMPK1 996086 sc-eQTL 6.17e-01 0.0452 0.0902 0.195 B_Naive2 L2
ENSG00000162373 BEND5 -447086 sc-eQTL 5.12e-01 0.0531 0.0809 0.195 B_Naive2 L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 3.02e-01 -0.094 0.0908 0.198 CD4_CTL L2
ENSG00000162368 CMPK1 996086 sc-eQTL 8.24e-01 -0.023 0.103 0.198 CD4_CTL L2
ENSG00000162373 BEND5 -447086 sc-eQTL 6.67e-01 -0.0302 0.0701 0.198 CD4_CTL L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 7.38e-01 0.0349 0.104 0.194 CD4_Naive L2
ENSG00000162368 CMPK1 996086 sc-eQTL 9.46e-01 -0.00436 0.0639 0.194 CD4_Naive L2
ENSG00000162373 BEND5 -447086 sc-eQTL 5.80e-01 -0.0554 0.1 0.194 CD4_Naive L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 6.28e-01 0.0499 0.103 0.194 CD4_TCM L2
ENSG00000162368 CMPK1 996086 sc-eQTL 8.87e-01 0.0101 0.0712 0.194 CD4_TCM L2
ENSG00000162373 BEND5 -447086 sc-eQTL 2.51e-01 -0.121 0.105 0.194 CD4_TCM L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 2.29e-01 0.129 0.107 0.194 CD4_TEM L2
ENSG00000162368 CMPK1 996086 sc-eQTL 9.22e-01 -0.00874 0.0888 0.194 CD4_TEM L2
ENSG00000162373 BEND5 -447086 sc-eQTL 3.49e-01 -0.0835 0.089 0.194 CD4_TEM L2
ENSG00000162368 CMPK1 996086 sc-eQTL 9.36e-01 0.00656 0.082 0.194 CD8_CTL L2
ENSG00000162373 BEND5 -447086 sc-eQTL 8.39e-01 -0.0165 0.0813 0.194 CD8_CTL L2
ENSG00000162368 CMPK1 996086 sc-eQTL 2.68e-01 -0.0877 0.0789 0.194 CD8_Naive L2
ENSG00000162373 BEND5 -447086 sc-eQTL 4.29e-01 -0.0773 0.0974 0.194 CD8_Naive L2
ENSG00000162368 CMPK1 996086 sc-eQTL 8.83e-01 -0.0135 0.0918 0.197 CD8_TCM L2
ENSG00000162373 BEND5 -447086 sc-eQTL 5.63e-01 0.0614 0.106 0.197 CD8_TCM L2
ENSG00000162368 CMPK1 996086 sc-eQTL 4.10e-01 0.0849 0.103 0.194 CD8_TEM L2
ENSG00000162373 BEND5 -447086 sc-eQTL 8.86e-01 -0.0124 0.0866 0.194 CD8_TEM L2
ENSG00000162368 CMPK1 996086 sc-eQTL 1.59e-01 -0.124 0.0876 0.195 MAIT L2
ENSG00000162368 CMPK1 996086 sc-eQTL 5.37e-01 -0.0634 0.103 0.187 NK_CD56bright L2
ENSG00000162368 CMPK1 996086 sc-eQTL 6.28e-01 -0.0373 0.0768 0.196 NK_CD56dim L2
ENSG00000162368 CMPK1 996086 sc-eQTL 3.89e-01 0.0872 0.101 0.185 NK_HLA L2
ENSG00000162368 CMPK1 996086 sc-eQTL 1.85e-01 0.123 0.0927 0.196 NK_cytokine L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 2.85e-01 0.095 0.0884 0.204 PB L2
ENSG00000162368 CMPK1 996086 sc-eQTL 7.28e-01 0.0413 0.118 0.204 PB L2
ENSG00000162373 BEND5 -447086 sc-eQTL 7.84e-01 -0.0346 0.126 0.204 PB L2
ENSG00000162368 CMPK1 996086 sc-eQTL 4.05e-01 0.0826 0.0991 0.191 Pro_T L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 2.61e-01 0.0988 0.0877 0.194 Treg L2
ENSG00000162368 CMPK1 996086 sc-eQTL 6.17e-01 0.04 0.08 0.194 Treg L2
ENSG00000162373 BEND5 -447086 sc-eQTL 8.29e-01 -0.0188 0.0868 0.194 Treg L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 3.89e-01 -0.0975 0.113 0.188 cDC L2
ENSG00000162368 CMPK1 996086 sc-eQTL 8.63e-02 -0.178 0.103 0.188 cDC L2
ENSG00000162373 BEND5 -447086 sc-eQTL 1.85e-01 -0.121 0.0913 0.188 cDC L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 1.13e-01 -0.143 0.0901 0.194 cMono_IL1B L2
ENSG00000162368 CMPK1 996086 sc-eQTL 1.49e-01 -0.119 0.0818 0.194 cMono_IL1B L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 8.81e-01 0.0147 0.0977 0.194 cMono_S100A L2
ENSG00000162368 CMPK1 996086 sc-eQTL 3.77e-01 -0.083 0.0938 0.194 cMono_S100A L2
ENSG00000162368 CMPK1 996086 sc-eQTL 8.67e-01 0.0216 0.128 0.176 gdT L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 5.70e-01 -0.0596 0.105 0.198 intMono L2
ENSG00000162368 CMPK1 996086 sc-eQTL 3.01e-01 0.107 0.103 0.198 intMono L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 8.24e-01 -0.0196 0.0878 0.192 ncMono L2
ENSG00000162368 CMPK1 996086 sc-eQTL 8.39e-01 0.0209 0.102 0.192 ncMono L2
ENSG00000132122 SPATA6 -142325 sc-eQTL 7.34e-01 0.0412 0.121 0.167 pDC L2
ENSG00000162368 CMPK1 996086 sc-eQTL 4.69e-01 0.0849 0.117 0.167 pDC L2
ENSG00000162373 BEND5 -447086 sc-eQTL 6.70e-02 0.21 0.114 0.167 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -142325 sc-eQTL 8.33e-01 0.0216 0.103 0.194 B_Memory LOneK1K
ENSG00000162368 CMPK1 996086 sc-eQTL 1.15e-02 -0.206 0.0809 0.194 B_Memory LOneK1K
ENSG00000162373 BEND5 -447086 sc-eQTL 4.76e-01 0.0614 0.086 0.194 B_Memory LOneK1K
ENSG00000132122 SPATA6 -142325 sc-eQTL 6.32e-01 0.0514 0.107 0.194 B_Naive LOneK1K
ENSG00000162368 CMPK1 996086 sc-eQTL 2.97e-01 -0.0873 0.0836 0.194 B_Naive LOneK1K
ENSG00000162373 BEND5 -447086 sc-eQTL 1.97e-01 0.0797 0.0616 0.194 B_Naive LOneK1K
ENSG00000132122 SPATA6 -142325 sc-eQTL 3.47e-01 -0.0821 0.0871 0.194 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 996086 sc-eQTL 3.59e-01 -0.0693 0.0755 0.194 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -142325 sc-eQTL 3.02e-01 -0.08 0.0774 0.194 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 996086 sc-eQTL 6.99e-01 0.0351 0.0905 0.194 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 996086 sc-eQTL 8.41e-01 0.013 0.0645 0.196 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000132122 SPATA6 -142325 eQTL 0.0514 0.0401 0.0205 0.00521 0.00208 0.248
ENSG00000162373 BEND5 -447086 eQTL 0.0292 -0.0417 0.0191 0.0 0.0 0.248
ENSG00000272491 AL109659.2 100322 eQTL 1.8e-06 -0.169 0.0351 0.0 0.0 0.248

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000272491 AL109659.2 100322 5.93e-06 9.1e-06 9.94e-07 4.25e-06 2.25e-06 2.7e-06 9.6e-06 1.76e-06 6.61e-06 4.24e-06 1.01e-05 4.54e-06 1.13e-05 3.82e-06 2.01e-06 5.82e-06 3.7e-06 4.39e-06 2.53e-06 2.63e-06 4.46e-06 7.55e-06 6.17e-06 2.82e-06 1.16e-05 2.89e-06 4.47e-06 3.31e-06 7.34e-06 7.69e-06 4.13e-06 8.06e-07 1.22e-06 2.85e-06 3.3e-06 2.12e-06 1.71e-06 1.68e-06 1.64e-06 9.75e-07 9.4e-07 8.73e-06 8.82e-07 1.88e-07 7.56e-07 1.63e-06 1.08e-06 6.88e-07 4.82e-07