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Genes within 1Mb (chr1:48303121:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -169087 sc-eQTL 7.71e-01 0.0259 0.089 0.447 B L1
ENSG00000162368 CMPK1 969324 sc-eQTL 4.08e-01 0.0511 0.0616 0.447 B L1
ENSG00000162373 BEND5 -473848 sc-eQTL 9.45e-01 0.00354 0.0514 0.447 B L1
ENSG00000132122 SPATA6 -169087 sc-eQTL 8.75e-01 -0.0139 0.0883 0.447 CD4T L1
ENSG00000162368 CMPK1 969324 sc-eQTL 4.02e-01 -0.0494 0.0589 0.447 CD4T L1
ENSG00000162373 BEND5 -473848 sc-eQTL 9.77e-01 -0.00222 0.0784 0.447 CD4T L1
ENSG00000162368 CMPK1 969324 sc-eQTL 1.83e-01 -0.0745 0.0558 0.447 CD8T L1
ENSG00000162373 BEND5 -473848 sc-eQTL 9.32e-01 -0.00445 0.0524 0.447 CD8T L1
ENSG00000123473 STIL 988974 sc-eQTL 2.86e-01 0.0851 0.0795 0.448 DC L1
ENSG00000132122 SPATA6 -169087 sc-eQTL 8.57e-01 -0.0161 0.0893 0.448 DC L1
ENSG00000162368 CMPK1 969324 sc-eQTL 7.13e-01 -0.0275 0.0746 0.448 DC L1
ENSG00000162373 BEND5 -473848 sc-eQTL 5.73e-01 -0.0428 0.0756 0.448 DC L1
ENSG00000132122 SPATA6 -169087 sc-eQTL 5.59e-01 0.0383 0.0655 0.447 Mono L1
ENSG00000162368 CMPK1 969324 sc-eQTL 6.83e-01 0.0266 0.065 0.447 Mono L1
ENSG00000162368 CMPK1 969324 sc-eQTL 9.58e-01 0.0029 0.055 0.448 NK L1
ENSG00000123473 STIL 988974 sc-eQTL 9.73e-01 0.00161 0.0478 0.447 Other_T L1
ENSG00000162368 CMPK1 969324 sc-eQTL 8.21e-01 -0.0171 0.0757 0.447 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -169087 sc-eQTL 7.90e-01 0.0219 0.0823 0.449 B_Activated L2
ENSG00000162368 CMPK1 969324 sc-eQTL 2.84e-01 0.105 0.0981 0.449 B_Activated L2
ENSG00000162373 BEND5 -473848 sc-eQTL 9.43e-01 0.00713 0.0988 0.449 B_Activated L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 3.18e-01 -0.0889 0.0888 0.448 B_Intermediate L2
ENSG00000162368 CMPK1 969324 sc-eQTL 7.70e-01 -0.0219 0.0749 0.448 B_Intermediate L2
ENSG00000162373 BEND5 -473848 sc-eQTL 2.01e-01 -0.103 0.0806 0.448 B_Intermediate L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 5.32e-01 0.0506 0.0808 0.446 B_Memory L2
ENSG00000162368 CMPK1 969324 sc-eQTL 4.80e-01 0.056 0.0792 0.446 B_Memory L2
ENSG00000162373 BEND5 -473848 sc-eQTL 4.53e-01 -0.0703 0.0934 0.446 B_Memory L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 9.45e-01 -0.00626 0.0912 0.447 B_Naive1 L2
ENSG00000162368 CMPK1 969324 sc-eQTL 2.19e-01 0.0902 0.0731 0.447 B_Naive1 L2
ENSG00000162373 BEND5 -473848 sc-eQTL 8.39e-01 -0.0123 0.0606 0.447 B_Naive1 L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 5.71e-01 0.0538 0.0948 0.446 B_Naive2 L2
ENSG00000162368 CMPK1 969324 sc-eQTL 2.53e-01 -0.0897 0.0783 0.446 B_Naive2 L2
ENSG00000162373 BEND5 -473848 sc-eQTL 6.88e-01 -0.0284 0.0705 0.446 B_Naive2 L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 4.66e-02 0.159 0.0794 0.443 CD4_CTL L2
ENSG00000162368 CMPK1 969324 sc-eQTL 6.03e-01 -0.0473 0.0907 0.443 CD4_CTL L2
ENSG00000162373 BEND5 -473848 sc-eQTL 3.68e-01 0.0556 0.0617 0.443 CD4_CTL L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 3.27e-01 -0.0892 0.0907 0.447 CD4_Naive L2
ENSG00000162368 CMPK1 969324 sc-eQTL 1.88e-01 -0.0736 0.0556 0.447 CD4_Naive L2
ENSG00000162373 BEND5 -473848 sc-eQTL 6.54e-01 -0.0392 0.0874 0.447 CD4_Naive L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 3.22e-01 0.0895 0.0901 0.447 CD4_TCM L2
ENSG00000162368 CMPK1 969324 sc-eQTL 2.55e-01 -0.0711 0.0623 0.447 CD4_TCM L2
ENSG00000162373 BEND5 -473848 sc-eQTL 8.04e-01 -0.023 0.0926 0.447 CD4_TCM L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 5.39e-01 -0.0585 0.0949 0.447 CD4_TEM L2
ENSG00000162368 CMPK1 969324 sc-eQTL 2.00e-01 -0.1 0.0782 0.447 CD4_TEM L2
ENSG00000162373 BEND5 -473848 sc-eQTL 1.03e-01 0.128 0.0783 0.447 CD4_TEM L2
ENSG00000162368 CMPK1 969324 sc-eQTL 9.36e-02 -0.123 0.0729 0.447 CD8_CTL L2
ENSG00000162373 BEND5 -473848 sc-eQTL 6.32e-01 -0.0349 0.0727 0.447 CD8_CTL L2
ENSG00000162368 CMPK1 969324 sc-eQTL 4.43e-01 -0.0534 0.0695 0.447 CD8_Naive L2
ENSG00000162373 BEND5 -473848 sc-eQTL 8.26e-01 0.0189 0.0858 0.447 CD8_Naive L2
ENSG00000162368 CMPK1 969324 sc-eQTL 6.21e-01 -0.0401 0.0811 0.435 CD8_TCM L2
ENSG00000162373 BEND5 -473848 sc-eQTL 5.26e-02 0.181 0.0928 0.435 CD8_TCM L2
ENSG00000162368 CMPK1 969324 sc-eQTL 8.01e-01 -0.0227 0.0899 0.457 CD8_TEM L2
ENSG00000162373 BEND5 -473848 sc-eQTL 4.70e-01 -0.0546 0.0755 0.457 CD8_TEM L2
ENSG00000123473 STIL 988974 sc-eQTL 8.71e-01 -0.0126 0.077 0.448 MAIT L2
ENSG00000162368 CMPK1 969324 sc-eQTL 6.50e-01 0.035 0.077 0.448 MAIT L2
ENSG00000162368 CMPK1 969324 sc-eQTL 7.85e-01 0.0241 0.0882 0.46 NK_CD56bright L2
ENSG00000162368 CMPK1 969324 sc-eQTL 9.52e-01 -0.00404 0.0678 0.45 NK_CD56dim L2
ENSG00000162368 CMPK1 969324 sc-eQTL 6.03e-01 -0.0463 0.0889 0.459 NK_HLA L2
ENSG00000162368 CMPK1 969324 sc-eQTL 1.80e-01 -0.108 0.0805 0.45 NK_cytokine L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 3.45e-01 -0.0728 0.0767 0.426 PB L2
ENSG00000162368 CMPK1 969324 sc-eQTL 2.16e-01 0.127 0.102 0.426 PB L2
ENSG00000162373 BEND5 -473848 sc-eQTL 7.11e-01 -0.0406 0.109 0.426 PB L2
ENSG00000123473 STIL 988974 sc-eQTL 2.53e-01 0.0681 0.0594 0.446 Pro_T L2
ENSG00000162368 CMPK1 969324 sc-eQTL 5.44e-01 -0.0531 0.0873 0.446 Pro_T L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 8.03e-01 -0.0194 0.0775 0.447 Treg L2
ENSG00000162368 CMPK1 969324 sc-eQTL 2.56e-01 -0.08 0.0702 0.447 Treg L2
ENSG00000162373 BEND5 -473848 sc-eQTL 8.58e-01 -0.0137 0.0764 0.447 Treg L2
ENSG00000123473 STIL 988974 sc-eQTL 7.73e-02 0.14 0.0789 0.451 cDC L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 9.67e-01 -0.00385 0.0939 0.451 cDC L2
ENSG00000162368 CMPK1 969324 sc-eQTL 4.48e-01 0.0658 0.0864 0.451 cDC L2
ENSG00000162373 BEND5 -473848 sc-eQTL 6.44e-02 0.14 0.0754 0.451 cDC L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 1.47e-01 0.115 0.0789 0.447 cMono_IL1B L2
ENSG00000162368 CMPK1 969324 sc-eQTL 7.94e-01 0.0188 0.0719 0.447 cMono_IL1B L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 5.43e-01 -0.0519 0.0852 0.447 cMono_S100A L2
ENSG00000162368 CMPK1 969324 sc-eQTL 6.52e-01 0.037 0.0819 0.447 cMono_S100A L2
ENSG00000123473 STIL 988974 sc-eQTL 8.75e-02 -0.153 0.0886 0.461 gdT L2
ENSG00000162368 CMPK1 969324 sc-eQTL 3.94e-01 -0.0889 0.104 0.461 gdT L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 5.25e-01 -0.0578 0.0908 0.444 intMono L2
ENSG00000162368 CMPK1 969324 sc-eQTL 9.63e-01 -0.0042 0.0897 0.444 intMono L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 2.73e-01 0.0811 0.0738 0.45 ncMono L2
ENSG00000162368 CMPK1 969324 sc-eQTL 6.75e-01 -0.0361 0.0862 0.45 ncMono L2
ENSG00000123473 STIL 988974 sc-eQTL 8.77e-01 0.0127 0.0816 0.472 pDC L2
ENSG00000132122 SPATA6 -169087 sc-eQTL 8.33e-01 -0.0195 0.0925 0.472 pDC L2
ENSG00000162368 CMPK1 969324 sc-eQTL 2.02e-01 -0.114 0.0892 0.472 pDC L2
ENSG00000162373 BEND5 -473848 sc-eQTL 5.49e-01 -0.0527 0.0879 0.472 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -169087 sc-eQTL 7.92e-01 -0.0236 0.0895 0.447 B_Memory LOneK1K
ENSG00000162368 CMPK1 969324 sc-eQTL 4.53e-01 0.0537 0.0716 0.447 B_Memory LOneK1K
ENSG00000162373 BEND5 -473848 sc-eQTL 3.16e-01 -0.0753 0.0749 0.447 B_Memory LOneK1K
ENSG00000132122 SPATA6 -169087 sc-eQTL 7.55e-01 0.0291 0.093 0.447 B_Naive LOneK1K
ENSG00000162368 CMPK1 969324 sc-eQTL 8.52e-01 0.0135 0.0727 0.447 B_Naive LOneK1K
ENSG00000162373 BEND5 -473848 sc-eQTL 9.16e-01 0.00565 0.0536 0.447 B_Naive LOneK1K
ENSG00000132122 SPATA6 -169087 sc-eQTL 4.88e-01 0.0524 0.0755 0.447 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 969324 sc-eQTL 6.55e-01 0.0293 0.0654 0.447 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -169087 sc-eQTL 4.58e-01 0.0501 0.0673 0.45 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 969324 sc-eQTL 8.89e-01 -0.011 0.0787 0.45 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 969324 sc-eQTL 8.44e-01 0.0112 0.0566 0.45 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117834 SLC5A9 80436 eQTL 0.00129 0.05 0.0155 0.0 0.0 0.429
ENSG00000132122 SPATA6 -169087 eQTL 0.0157 -0.0439 0.0181 0.0 0.0 0.429
ENSG00000162373 BEND5 -473848 eQTL 0.0164 0.0405 0.0169 0.0 0.0 0.429
ENSG00000272491 AL109659.2 73560 eQTL 1.41e-15 0.247 0.0304 0.0044 0.00617 0.429

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117834 SLC5A9 80436 6.87e-06 9.39e-06 1.3e-06 4.31e-06 2.25e-06 3.11e-06 9.67e-06 1.69e-06 6.53e-06 4.26e-06 9.93e-06 4.59e-06 1.15e-05 3.66e-06 2e-06 5.84e-06 3.75e-06 4.46e-06 2.66e-06 2.82e-06 4.57e-06 7.64e-06 6.75e-06 3.21e-06 1.19e-05 3.11e-06 4.48e-06 3e-06 7.52e-06 7.87e-06 4.12e-06 8.06e-07 1.12e-06 2.88e-06 3.09e-06 2.22e-06 1.72e-06 1.83e-06 1.62e-06 9.79e-07 9.79e-07 9.93e-06 1.04e-06 2.22e-07 7.85e-07 1.47e-06 9.03e-07 7.2e-07 4.32e-07
ENSG00000272491 AL109659.2 73560 7.68e-06 9.42e-06 1.29e-06 4.82e-06 2.44e-06 3.79e-06 9.8e-06 1.81e-06 7.89e-06 4.76e-06 1.07e-05 4.97e-06 1.24e-05 3.91e-06 2.23e-06 6.42e-06 3.8e-06 5.56e-06 2.55e-06 2.91e-06 4.67e-06 8.06e-06 6.85e-06 3.32e-06 1.26e-05 3.55e-06 4.63e-06 3.29e-06 8.33e-06 7.93e-06 4.61e-06 9.88e-07 1.27e-06 3.01e-06 3.62e-06 2.56e-06 1.86e-06 1.97e-06 1.89e-06 9.56e-07 1.01e-06 1.14e-05 1.3e-06 2.5e-07 8.27e-07 1.63e-06 1.06e-06 6.88e-07 4.62e-07