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Genes within 1Mb (chr1:48252623:CA:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -219585 sc-eQTL 8.26e-01 0.02 0.0911 0.393 B L1
ENSG00000162368 CMPK1 918826 sc-eQTL 4.95e-01 -0.0432 0.0631 0.393 B L1
ENSG00000162373 BEND5 -524346 sc-eQTL 9.18e-01 0.0054 0.0526 0.393 B L1
ENSG00000132122 SPATA6 -219585 sc-eQTL 6.37e-01 0.0433 0.0917 0.393 CD4T L1
ENSG00000162368 CMPK1 918826 sc-eQTL 9.04e-01 -0.0074 0.0613 0.393 CD4T L1
ENSG00000162373 BEND5 -524346 sc-eQTL 9.12e-01 0.00898 0.0815 0.393 CD4T L1
ENSG00000162368 CMPK1 918826 sc-eQTL 7.59e-01 -0.0174 0.0569 0.393 CD8T L1
ENSG00000162373 BEND5 -524346 sc-eQTL 6.69e-01 0.0227 0.0532 0.393 CD8T L1
ENSG00000123473 STIL 938476 sc-eQTL 9.54e-01 0.00487 0.085 0.396 DC L1
ENSG00000132122 SPATA6 -219585 sc-eQTL 9.77e-01 0.00271 0.0952 0.396 DC L1
ENSG00000162368 CMPK1 918826 sc-eQTL 5.62e-01 0.0462 0.0795 0.396 DC L1
ENSG00000162373 BEND5 -524346 sc-eQTL 9.28e-01 0.00729 0.0807 0.396 DC L1
ENSG00000132122 SPATA6 -219585 sc-eQTL 3.21e-01 -0.067 0.0674 0.393 Mono L1
ENSG00000162368 CMPK1 918826 sc-eQTL 7.89e-02 0.117 0.0665 0.393 Mono L1
ENSG00000162368 CMPK1 918826 sc-eQTL 2.61e-01 0.0631 0.056 0.393 NK L1
ENSG00000123473 STIL 938476 sc-eQTL 8.18e-01 0.0113 0.0492 0.393 Other_T L1
ENSG00000162368 CMPK1 918826 sc-eQTL 9.33e-01 0.00658 0.0778 0.393 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -219585 sc-eQTL 8.79e-01 0.013 0.0853 0.383 B_Activated L2
ENSG00000162368 CMPK1 918826 sc-eQTL 6.04e-01 0.053 0.102 0.383 B_Activated L2
ENSG00000162373 BEND5 -524346 sc-eQTL 6.46e-01 -0.047 0.102 0.383 B_Activated L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 5.70e-01 -0.0524 0.092 0.393 B_Intermediate L2
ENSG00000162368 CMPK1 918826 sc-eQTL 4.71e-01 -0.0559 0.0774 0.393 B_Intermediate L2
ENSG00000162373 BEND5 -524346 sc-eQTL 2.36e-01 0.0993 0.0834 0.393 B_Intermediate L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 7.58e-01 -0.0262 0.085 0.397 B_Memory L2
ENSG00000162368 CMPK1 918826 sc-eQTL 7.37e-01 -0.0279 0.0832 0.397 B_Memory L2
ENSG00000162373 BEND5 -524346 sc-eQTL 8.85e-02 0.167 0.0976 0.397 B_Memory L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 1.90e-01 0.124 0.0942 0.393 B_Naive1 L2
ENSG00000162368 CMPK1 918826 sc-eQTL 3.73e-01 -0.0678 0.076 0.393 B_Naive1 L2
ENSG00000162373 BEND5 -524346 sc-eQTL 3.82e-01 0.0549 0.0627 0.393 B_Naive1 L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 7.17e-01 -0.0353 0.0974 0.395 B_Naive2 L2
ENSG00000162368 CMPK1 918826 sc-eQTL 9.25e-01 -0.00757 0.0807 0.395 B_Naive2 L2
ENSG00000162373 BEND5 -524346 sc-eQTL 3.24e-01 -0.0715 0.0723 0.395 B_Naive2 L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 5.48e-01 -0.0497 0.0826 0.395 CD4_CTL L2
ENSG00000162368 CMPK1 918826 sc-eQTL 9.03e-01 -0.0114 0.0936 0.395 CD4_CTL L2
ENSG00000162373 BEND5 -524346 sc-eQTL 5.71e-01 0.0362 0.0637 0.395 CD4_CTL L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 5.77e-01 0.0531 0.0949 0.393 CD4_Naive L2
ENSG00000162368 CMPK1 918826 sc-eQTL 9.70e-01 0.00218 0.0584 0.393 CD4_Naive L2
ENSG00000162373 BEND5 -524346 sc-eQTL 5.66e-01 0.0525 0.0912 0.393 CD4_Naive L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 7.51e-01 0.0294 0.0924 0.393 CD4_TCM L2
ENSG00000162368 CMPK1 918826 sc-eQTL 4.36e-01 0.0499 0.0639 0.393 CD4_TCM L2
ENSG00000162373 BEND5 -524346 sc-eQTL 2.92e-01 0.0999 0.0946 0.393 CD4_TCM L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 8.95e-01 -0.0133 0.1 0.393 CD4_TEM L2
ENSG00000162368 CMPK1 918826 sc-eQTL 8.10e-01 0.02 0.0829 0.393 CD4_TEM L2
ENSG00000162373 BEND5 -524346 sc-eQTL 2.87e-01 -0.0886 0.0831 0.393 CD4_TEM L2
ENSG00000162368 CMPK1 918826 sc-eQTL 9.51e-01 0.00463 0.075 0.393 CD8_CTL L2
ENSG00000162373 BEND5 -524346 sc-eQTL 7.49e-01 0.0238 0.0744 0.393 CD8_CTL L2
ENSG00000162368 CMPK1 918826 sc-eQTL 6.33e-01 -0.0339 0.0709 0.393 CD8_Naive L2
ENSG00000162373 BEND5 -524346 sc-eQTL 8.26e-01 0.0193 0.0875 0.393 CD8_Naive L2
ENSG00000162368 CMPK1 918826 sc-eQTL 8.20e-01 -0.0189 0.0826 0.407 CD8_TCM L2
ENSG00000162373 BEND5 -524346 sc-eQTL 9.99e-01 -0.000136 0.0954 0.407 CD8_TCM L2
ENSG00000162368 CMPK1 918826 sc-eQTL 6.68e-01 -0.0401 0.0931 0.386 CD8_TEM L2
ENSG00000162373 BEND5 -524346 sc-eQTL 9.16e-02 -0.132 0.0777 0.386 CD8_TEM L2
ENSG00000123473 STIL 938476 sc-eQTL 9.67e-01 0.00323 0.0783 0.396 MAIT L2
ENSG00000162368 CMPK1 918826 sc-eQTL 7.80e-01 -0.0219 0.0783 0.396 MAIT L2
ENSG00000162368 CMPK1 918826 sc-eQTL 5.11e-01 0.0599 0.0911 0.387 NK_CD56bright L2
ENSG00000162368 CMPK1 918826 sc-eQTL 9.68e-01 -0.00277 0.0686 0.39 NK_CD56dim L2
ENSG00000162368 CMPK1 918826 sc-eQTL 9.54e-01 -0.00536 0.0921 0.39 NK_HLA L2
ENSG00000162368 CMPK1 918826 sc-eQTL 2.13e-01 0.104 0.0834 0.39 NK_cytokine L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 7.21e-02 0.144 0.0795 0.385 PB L2
ENSG00000162368 CMPK1 918826 sc-eQTL 5.82e-01 -0.0592 0.107 0.385 PB L2
ENSG00000162373 BEND5 -524346 sc-eQTL 5.74e-01 0.0645 0.114 0.385 PB L2
ENSG00000123473 STIL 938476 sc-eQTL 1.21e-01 -0.0955 0.0613 0.393 Pro_T L2
ENSG00000162368 CMPK1 918826 sc-eQTL 6.93e-01 0.0357 0.0903 0.393 Pro_T L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 2.58e-01 0.0918 0.0809 0.393 Treg L2
ENSG00000162368 CMPK1 918826 sc-eQTL 3.38e-01 0.0708 0.0737 0.393 Treg L2
ENSG00000162373 BEND5 -524346 sc-eQTL 5.58e-01 0.047 0.08 0.393 Treg L2
ENSG00000123473 STIL 938476 sc-eQTL 3.55e-01 -0.0789 0.0851 0.4 cDC L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 7.57e-01 -0.0312 0.101 0.4 cDC L2
ENSG00000162368 CMPK1 918826 sc-eQTL 4.10e-01 -0.0764 0.0926 0.4 cDC L2
ENSG00000162373 BEND5 -524346 sc-eQTL 3.92e-02 -0.168 0.0807 0.4 cDC L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 3.15e-02 -0.175 0.0807 0.393 cMono_IL1B L2
ENSG00000162368 CMPK1 918826 sc-eQTL 3.70e-01 0.0663 0.0738 0.393 cMono_IL1B L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 7.60e-01 0.0271 0.0886 0.393 cMono_S100A L2
ENSG00000162368 CMPK1 918826 sc-eQTL 1.01e-01 0.139 0.0846 0.393 cMono_S100A L2
ENSG00000123473 STIL 938476 sc-eQTL 6.20e-01 0.0479 0.0962 0.394 gdT L2
ENSG00000162368 CMPK1 918826 sc-eQTL 8.42e-01 -0.0224 0.112 0.394 gdT L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 2.56e-01 0.108 0.0953 0.393 intMono L2
ENSG00000162368 CMPK1 918826 sc-eQTL 2.19e-01 0.116 0.094 0.393 intMono L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 6.39e-01 0.0366 0.0779 0.389 ncMono L2
ENSG00000162368 CMPK1 918826 sc-eQTL 1.59e-01 0.128 0.0903 0.389 ncMono L2
ENSG00000123473 STIL 938476 sc-eQTL 6.21e-01 0.0461 0.0931 0.376 pDC L2
ENSG00000132122 SPATA6 -219585 sc-eQTL 4.77e-02 0.208 0.104 0.376 pDC L2
ENSG00000162368 CMPK1 918826 sc-eQTL 9.15e-01 0.0109 0.102 0.376 pDC L2
ENSG00000162373 BEND5 -524346 sc-eQTL 5.57e-01 0.0591 0.1 0.376 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -219585 sc-eQTL 6.72e-01 -0.0396 0.0933 0.393 B_Memory LOneK1K
ENSG00000162368 CMPK1 918826 sc-eQTL 3.78e-01 -0.0658 0.0746 0.393 B_Memory LOneK1K
ENSG00000162373 BEND5 -524346 sc-eQTL 2.05e-01 0.0991 0.078 0.393 B_Memory LOneK1K
ENSG00000132122 SPATA6 -219585 sc-eQTL 3.38e-01 0.0918 0.0955 0.393 B_Naive LOneK1K
ENSG00000162368 CMPK1 918826 sc-eQTL 4.27e-01 -0.0595 0.0747 0.393 B_Naive LOneK1K
ENSG00000162373 BEND5 -524346 sc-eQTL 9.72e-01 0.00195 0.0552 0.393 B_Naive LOneK1K
ENSG00000132122 SPATA6 -219585 sc-eQTL 1.43e-01 -0.114 0.0778 0.393 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 918826 sc-eQTL 1.30e-01 0.102 0.0674 0.393 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -219585 sc-eQTL 3.82e-01 0.061 0.0696 0.39 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 918826 sc-eQTL 2.56e-01 0.0925 0.0811 0.39 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 918826 sc-eQTL 4.22e-01 0.0463 0.0576 0.39 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000132122 SPATA6 -219585 eQTL 0.000136 0.0678 0.0177 0.0 0.0 0.428
ENSG00000162373 BEND5 -524346 eQTL 0.0272 -0.0366 0.0166 0.0 0.0 0.428
ENSG00000237424 FOXD2-AS1 817982 eQTL 0.0286 0.0526 0.024 0.0 0.0 0.428
ENSG00000272491 AL109659.2 23062 eQTL 3.32e-05 -0.127 0.0306 0.0 0.0 0.428

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000272491 AL109659.2 23062 1.8e-05 1.96e-05 2.64e-06 1.24e-05 3.09e-06 8.35e-06 2.95e-05 3.08e-06 1.88e-05 9.45e-06 2.38e-05 9.95e-06 3.03e-05 9.95e-06 4.91e-06 1.59e-05 8.19e-06 1.57e-05 4.28e-06 3.8e-06 8.31e-06 1.87e-05 1.87e-05 5.44e-06 4.33e-05 5.25e-06 8.97e-06 8.34e-06 2.03e-05 1.25e-05 1.18e-05 1.58e-06 1.27e-06 4.85e-06 8.76e-06 3.82e-06 1.85e-06 2.39e-06 2.81e-06 2.86e-06 1.44e-06 2.55e-05 2.75e-06 3.66e-07 1.95e-06 2.77e-06 3.36e-06 1.48e-06 1.12e-06