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Genes within 1Mb (chr1:48248516:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -223692 sc-eQTL 5.83e-01 -0.0672 0.122 0.15 B L1
ENSG00000162368 CMPK1 914719 sc-eQTL 5.78e-01 0.0473 0.0849 0.15 B L1
ENSG00000162373 BEND5 -528453 sc-eQTL 7.63e-01 -0.0214 0.0707 0.15 B L1
ENSG00000132122 SPATA6 -223692 sc-eQTL 2.72e-01 0.132 0.119 0.15 CD4T L1
ENSG00000162368 CMPK1 914719 sc-eQTL 3.95e-01 0.0681 0.0798 0.15 CD4T L1
ENSG00000162373 BEND5 -528453 sc-eQTL 5.14e-01 0.0694 0.106 0.15 CD4T L1
ENSG00000162368 CMPK1 914719 sc-eQTL 1.21e-01 0.114 0.0733 0.15 CD8T L1
ENSG00000162373 BEND5 -528453 sc-eQTL 9.28e-01 -0.00628 0.0689 0.15 CD8T L1
ENSG00000123473 STIL 934369 sc-eQTL 1.98e-01 -0.144 0.111 0.144 DC L1
ENSG00000132122 SPATA6 -223692 sc-eQTL 3.97e-01 0.106 0.125 0.144 DC L1
ENSG00000162368 CMPK1 914719 sc-eQTL 7.16e-01 -0.0382 0.105 0.144 DC L1
ENSG00000162373 BEND5 -528453 sc-eQTL 8.01e-01 -0.0268 0.106 0.144 DC L1
ENSG00000132122 SPATA6 -223692 sc-eQTL 5.28e-01 0.0568 0.0899 0.15 Mono L1
ENSG00000162368 CMPK1 914719 sc-eQTL 5.56e-03 -0.246 0.0877 0.15 Mono L1
ENSG00000162368 CMPK1 914719 sc-eQTL 6.26e-01 -0.0359 0.0735 0.15 NK L1
ENSG00000123473 STIL 934369 sc-eQTL 6.29e-01 0.031 0.0642 0.15 Other_T L1
ENSG00000162368 CMPK1 914719 sc-eQTL 6.46e-01 0.0467 0.102 0.15 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -223692 sc-eQTL 1.33e-01 -0.173 0.115 0.145 B_Activated L2
ENSG00000162368 CMPK1 914719 sc-eQTL 4.45e-01 -0.106 0.138 0.145 B_Activated L2
ENSG00000162373 BEND5 -528453 sc-eQTL 9.81e-01 0.00333 0.139 0.145 B_Activated L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 3.09e-01 0.123 0.121 0.15 B_Intermediate L2
ENSG00000162368 CMPK1 914719 sc-eQTL 1.18e-01 0.16 0.102 0.15 B_Intermediate L2
ENSG00000162373 BEND5 -528453 sc-eQTL 9.65e-01 -0.00486 0.11 0.15 B_Intermediate L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 2.76e-01 -0.121 0.111 0.147 B_Memory L2
ENSG00000162368 CMPK1 914719 sc-eQTL 8.44e-01 -0.0215 0.109 0.147 B_Memory L2
ENSG00000162373 BEND5 -528453 sc-eQTL 5.77e-01 -0.072 0.129 0.147 B_Memory L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 1.53e-01 -0.18 0.126 0.15 B_Naive1 L2
ENSG00000162368 CMPK1 914719 sc-eQTL 5.43e-01 0.0618 0.102 0.15 B_Naive1 L2
ENSG00000162373 BEND5 -528453 sc-eQTL 3.67e-01 -0.0758 0.0838 0.15 B_Naive1 L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 6.29e-01 -0.062 0.128 0.148 B_Naive2 L2
ENSG00000162368 CMPK1 914719 sc-eQTL 6.59e-01 0.0469 0.106 0.148 B_Naive2 L2
ENSG00000162373 BEND5 -528453 sc-eQTL 1.74e-01 0.129 0.0948 0.148 B_Naive2 L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 5.19e-01 -0.0683 0.106 0.15 CD4_CTL L2
ENSG00000162368 CMPK1 914719 sc-eQTL 5.09e-01 0.0791 0.119 0.15 CD4_CTL L2
ENSG00000162373 BEND5 -528453 sc-eQTL 3.98e-01 -0.0688 0.0813 0.15 CD4_CTL L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 2.34e-01 0.148 0.124 0.15 CD4_Naive L2
ENSG00000162368 CMPK1 914719 sc-eQTL 2.63e-01 0.0856 0.0762 0.15 CD4_Naive L2
ENSG00000162373 BEND5 -528453 sc-eQTL 4.70e-01 0.0864 0.119 0.15 CD4_Naive L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 8.99e-01 -0.0155 0.122 0.15 CD4_TCM L2
ENSG00000162368 CMPK1 914719 sc-eQTL 6.88e-01 0.0339 0.0842 0.15 CD4_TCM L2
ENSG00000162373 BEND5 -528453 sc-eQTL 8.80e-01 -0.0189 0.125 0.15 CD4_TCM L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 3.98e-01 0.109 0.128 0.15 CD4_TEM L2
ENSG00000162368 CMPK1 914719 sc-eQTL 6.76e-01 0.0443 0.106 0.15 CD4_TEM L2
ENSG00000162373 BEND5 -528453 sc-eQTL 2.39e-01 -0.125 0.106 0.15 CD4_TEM L2
ENSG00000162368 CMPK1 914719 sc-eQTL 5.04e-02 0.19 0.0967 0.15 CD8_CTL L2
ENSG00000162373 BEND5 -528453 sc-eQTL 2.49e-01 0.112 0.0965 0.15 CD8_CTL L2
ENSG00000162368 CMPK1 914719 sc-eQTL 5.04e-01 0.0627 0.0937 0.15 CD8_Naive L2
ENSG00000162373 BEND5 -528453 sc-eQTL 6.21e-01 0.0572 0.116 0.15 CD8_Naive L2
ENSG00000162368 CMPK1 914719 sc-eQTL 8.40e-01 0.0215 0.106 0.15 CD8_TCM L2
ENSG00000162373 BEND5 -528453 sc-eQTL 1.48e-02 -0.297 0.121 0.15 CD8_TCM L2
ENSG00000162368 CMPK1 914719 sc-eQTL 3.02e-01 0.125 0.121 0.151 CD8_TEM L2
ENSG00000162373 BEND5 -528453 sc-eQTL 2.33e-02 0.229 0.1 0.151 CD8_TEM L2
ENSG00000123473 STIL 934369 sc-eQTL 3.80e-01 0.0904 0.103 0.145 MAIT L2
ENSG00000162368 CMPK1 914719 sc-eQTL 5.22e-01 0.0659 0.103 0.145 MAIT L2
ENSG00000162368 CMPK1 914719 sc-eQTL 3.06e-01 -0.12 0.117 0.149 NK_CD56bright L2
ENSG00000162368 CMPK1 914719 sc-eQTL 5.47e-01 0.054 0.0895 0.151 NK_CD56dim L2
ENSG00000162368 CMPK1 914719 sc-eQTL 5.95e-01 0.0639 0.12 0.148 NK_HLA L2
ENSG00000162368 CMPK1 914719 sc-eQTL 4.45e-01 0.0826 0.108 0.151 NK_cytokine L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 8.82e-01 0.0161 0.108 0.17 PB L2
ENSG00000162368 CMPK1 914719 sc-eQTL 1.63e-01 -0.201 0.143 0.17 PB L2
ENSG00000162373 BEND5 -528453 sc-eQTL 3.08e-01 -0.156 0.153 0.17 PB L2
ENSG00000123473 STIL 934369 sc-eQTL 1.72e-01 0.11 0.0804 0.152 Pro_T L2
ENSG00000162368 CMPK1 914719 sc-eQTL 7.25e-02 -0.212 0.118 0.152 Pro_T L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 7.98e-01 -0.0271 0.106 0.15 Treg L2
ENSG00000162368 CMPK1 914719 sc-eQTL 9.67e-01 -0.00392 0.0962 0.15 Treg L2
ENSG00000162373 BEND5 -528453 sc-eQTL 3.59e-01 -0.0957 0.104 0.15 Treg L2
ENSG00000123473 STIL 934369 sc-eQTL 7.94e-01 -0.0298 0.114 0.139 cDC L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 5.05e-01 0.0898 0.135 0.139 cDC L2
ENSG00000162368 CMPK1 914719 sc-eQTL 2.53e-01 -0.142 0.124 0.139 cDC L2
ENSG00000162373 BEND5 -528453 sc-eQTL 9.18e-01 0.0112 0.109 0.139 cDC L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 6.10e-01 0.0554 0.109 0.15 cMono_IL1B L2
ENSG00000162368 CMPK1 914719 sc-eQTL 3.94e-01 -0.084 0.0983 0.15 cMono_IL1B L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 6.59e-01 -0.0529 0.12 0.15 cMono_S100A L2
ENSG00000162368 CMPK1 914719 sc-eQTL 9.10e-03 -0.298 0.113 0.15 cMono_S100A L2
ENSG00000123473 STIL 934369 sc-eQTL 8.30e-01 0.0248 0.116 0.145 gdT L2
ENSG00000162368 CMPK1 914719 sc-eQTL 4.74e-02 0.265 0.133 0.145 gdT L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 7.80e-01 0.0364 0.131 0.149 intMono L2
ENSG00000162368 CMPK1 914719 sc-eQTL 8.02e-02 -0.225 0.128 0.149 intMono L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 1.65e-01 -0.136 0.0979 0.152 ncMono L2
ENSG00000162368 CMPK1 914719 sc-eQTL 9.58e-01 0.00603 0.115 0.152 ncMono L2
ENSG00000123473 STIL 934369 sc-eQTL 9.21e-02 -0.192 0.113 0.138 pDC L2
ENSG00000132122 SPATA6 -223692 sc-eQTL 4.08e-01 -0.107 0.13 0.138 pDC L2
ENSG00000162368 CMPK1 914719 sc-eQTL 1.99e-01 0.161 0.125 0.138 pDC L2
ENSG00000162373 BEND5 -528453 sc-eQTL 7.55e-01 0.0386 0.123 0.138 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -223692 sc-eQTL 8.70e-01 -0.0199 0.122 0.15 B_Memory LOneK1K
ENSG00000162368 CMPK1 914719 sc-eQTL 3.57e-01 0.0898 0.0972 0.15 B_Memory LOneK1K
ENSG00000162373 BEND5 -528453 sc-eQTL 9.89e-01 -0.00147 0.102 0.15 B_Memory LOneK1K
ENSG00000132122 SPATA6 -223692 sc-eQTL 2.51e-01 -0.146 0.126 0.15 B_Naive LOneK1K
ENSG00000162368 CMPK1 914719 sc-eQTL 4.09e-01 0.0819 0.0989 0.15 B_Naive LOneK1K
ENSG00000162373 BEND5 -528453 sc-eQTL 8.98e-01 -0.00939 0.0731 0.15 B_Naive LOneK1K
ENSG00000132122 SPATA6 -223692 sc-eQTL 7.24e-01 0.037 0.105 0.15 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 914719 sc-eQTL 9.92e-03 -0.232 0.0891 0.15 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -223692 sc-eQTL 3.52e-01 -0.0844 0.0905 0.151 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 914719 sc-eQTL 5.49e-01 -0.0635 0.106 0.151 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 914719 sc-eQTL 6.84e-01 -0.0308 0.0756 0.151 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117834 SLC5A9 25831 eQTL 0.000124 -0.0863 0.0224 0.00128 0.00153 0.131
ENSG00000272491 AL109659.2 18955 eQTL 0.00319 -0.134 0.0453 0.0 0.0 0.131

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117834 SLC5A9 25831 1.46e-05 1.69e-05 3.15e-06 1.01e-05 3.06e-06 7.99e-06 2.32e-05 2.99e-06 1.64e-05 8.48e-06 2.09e-05 8.18e-06 3.03e-05 7.35e-06 5.19e-06 9.71e-06 8.87e-06 1.41e-05 5.17e-06 4.41e-06 8.39e-06 1.65e-05 1.71e-05 5.59e-06 2.77e-05 5.41e-06 8e-06 7.77e-06 1.95e-05 1.88e-05 1.13e-05 1.26e-06 1.88e-06 5.09e-06 7.51e-06 4.2e-06 2.12e-06 2.71e-06 3.35e-06 2.42e-06 1.63e-06 2e-05 2.47e-06 2.96e-07 1.9e-06 2.61e-06 2.9e-06 1.29e-06 1.04e-06
ENSG00000272491 AL109659.2 18955 1.67e-05 2.1e-05 4.28e-06 1.21e-05 3.7e-06 9.84e-06 2.88e-05 3.41e-06 1.84e-05 9.88e-06 2.48e-05 9.59e-06 3.56e-05 9.13e-06 5.36e-06 1.13e-05 1.08e-05 1.69e-05 6.45e-06 5.22e-06 9.54e-06 2.04e-05 2.02e-05 6.81e-06 3.2e-05 5.72e-06 8.23e-06 8.88e-06 2.39e-05 2.23e-05 1.29e-05 1.58e-06 2.24e-06 6.01e-06 8.76e-06 4.54e-06 2.68e-06 2.83e-06 3.81e-06 2.92e-06 1.66e-06 2.41e-05 2.66e-06 3.59e-07 2.03e-06 2.75e-06 3.43e-06 1.5e-06 1.32e-06