logo

Genes within 1Mb (chr1:48247722:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -224486 sc-eQTL 4.24e-01 0.0878 0.11 0.793 B L1
ENSG00000162368 CMPK1 913925 sc-eQTL 9.75e-01 0.00241 0.0761 0.793 B L1
ENSG00000162373 BEND5 -529247 sc-eQTL 3.60e-01 0.058 0.0632 0.793 B L1
ENSG00000132122 SPATA6 -224486 sc-eQTL 9.04e-01 -0.0133 0.11 0.793 CD4T L1
ENSG00000162368 CMPK1 913925 sc-eQTL 8.30e-01 -0.0158 0.0735 0.793 CD4T L1
ENSG00000162373 BEND5 -529247 sc-eQTL 6.89e-01 0.0392 0.0977 0.793 CD4T L1
ENSG00000162368 CMPK1 913925 sc-eQTL 1.20e-01 -0.104 0.0666 0.793 CD8T L1
ENSG00000162373 BEND5 -529247 sc-eQTL 7.39e-01 0.0209 0.0627 0.793 CD8T L1
ENSG00000123473 STIL 933575 sc-eQTL 5.19e-01 0.0643 0.0996 0.795 DC L1
ENSG00000132122 SPATA6 -224486 sc-eQTL 5.00e-01 -0.0753 0.112 0.795 DC L1
ENSG00000162368 CMPK1 913925 sc-eQTL 6.71e-01 0.0397 0.0933 0.795 DC L1
ENSG00000162373 BEND5 -529247 sc-eQTL 7.16e-01 -0.0345 0.0946 0.795 DC L1
ENSG00000132122 SPATA6 -224486 sc-eQTL 8.10e-01 -0.0191 0.0794 0.793 Mono L1
ENSG00000162368 CMPK1 913925 sc-eQTL 3.35e-03 0.229 0.0772 0.793 Mono L1
ENSG00000162368 CMPK1 913925 sc-eQTL 2.04e-01 0.0851 0.0668 0.792 NK L1
ENSG00000123473 STIL 933575 sc-eQTL 8.38e-01 -0.0117 0.0573 0.793 Other_T L1
ENSG00000162368 CMPK1 913925 sc-eQTL 9.19e-01 -0.00925 0.0907 0.793 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -224486 sc-eQTL 2.66e-01 0.111 0.0997 0.788 B_Activated L2
ENSG00000162368 CMPK1 913925 sc-eQTL 3.53e-01 0.111 0.119 0.788 B_Activated L2
ENSG00000162373 BEND5 -529247 sc-eQTL 6.22e-01 0.0593 0.12 0.788 B_Activated L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 3.63e-01 -0.0988 0.108 0.794 B_Intermediate L2
ENSG00000162368 CMPK1 913925 sc-eQTL 2.27e-01 -0.11 0.091 0.794 B_Intermediate L2
ENSG00000162373 BEND5 -529247 sc-eQTL 4.17e-01 -0.08 0.0985 0.794 B_Intermediate L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 3.63e-01 0.0902 0.099 0.795 B_Memory L2
ENSG00000162368 CMPK1 913925 sc-eQTL 2.95e-01 0.102 0.0969 0.795 B_Memory L2
ENSG00000162373 BEND5 -529247 sc-eQTL 3.72e-01 0.102 0.114 0.795 B_Memory L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 2.18e-01 0.137 0.111 0.793 B_Naive1 L2
ENSG00000162368 CMPK1 913925 sc-eQTL 9.75e-01 -0.00278 0.0895 0.793 B_Naive1 L2
ENSG00000162373 BEND5 -529247 sc-eQTL 1.63e-01 0.103 0.0736 0.793 B_Naive1 L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 6.38e-01 0.0535 0.113 0.794 B_Naive2 L2
ENSG00000162368 CMPK1 913925 sc-eQTL 5.83e-01 -0.0516 0.094 0.794 B_Naive2 L2
ENSG00000162373 BEND5 -529247 sc-eQTL 2.62e-01 -0.0946 0.0842 0.794 B_Naive2 L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 2.20e-01 0.117 0.0954 0.791 CD4_CTL L2
ENSG00000162368 CMPK1 913925 sc-eQTL 8.03e-01 -0.0271 0.108 0.791 CD4_CTL L2
ENSG00000162373 BEND5 -529247 sc-eQTL 2.14e-01 0.0917 0.0735 0.791 CD4_CTL L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 9.45e-01 0.0078 0.114 0.793 CD4_Naive L2
ENSG00000162368 CMPK1 913925 sc-eQTL 7.11e-01 -0.026 0.07 0.793 CD4_Naive L2
ENSG00000162373 BEND5 -529247 sc-eQTL 5.84e-01 0.06 0.109 0.793 CD4_Naive L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 8.70e-01 0.0184 0.112 0.793 CD4_TCM L2
ENSG00000162368 CMPK1 913925 sc-eQTL 7.91e-01 0.0205 0.0776 0.793 CD4_TCM L2
ENSG00000162373 BEND5 -529247 sc-eQTL 9.23e-01 0.0111 0.115 0.793 CD4_TCM L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 2.48e-01 -0.134 0.116 0.793 CD4_TEM L2
ENSG00000162368 CMPK1 913925 sc-eQTL 6.26e-01 -0.0468 0.096 0.793 CD4_TEM L2
ENSG00000162373 BEND5 -529247 sc-eQTL 8.92e-01 0.0131 0.0964 0.793 CD4_TEM L2
ENSG00000162368 CMPK1 913925 sc-eQTL 6.71e-02 -0.159 0.0866 0.793 CD8_CTL L2
ENSG00000162373 BEND5 -529247 sc-eQTL 9.58e-01 0.00458 0.0866 0.793 CD8_CTL L2
ENSG00000162368 CMPK1 913925 sc-eQTL 3.17e-01 -0.0856 0.0854 0.793 CD8_Naive L2
ENSG00000162373 BEND5 -529247 sc-eQTL 9.20e-01 0.0106 0.106 0.793 CD8_Naive L2
ENSG00000162368 CMPK1 913925 sc-eQTL 2.42e-01 -0.112 0.0952 0.792 CD8_TCM L2
ENSG00000162373 BEND5 -529247 sc-eQTL 4.99e-02 0.215 0.109 0.792 CD8_TCM L2
ENSG00000162368 CMPK1 913925 sc-eQTL 4.93e-01 -0.073 0.106 0.795 CD8_TEM L2
ENSG00000162373 BEND5 -529247 sc-eQTL 9.20e-03 -0.231 0.088 0.795 CD8_TEM L2
ENSG00000123473 STIL 933575 sc-eQTL 1.01e-01 -0.152 0.0921 0.797 MAIT L2
ENSG00000162368 CMPK1 913925 sc-eQTL 5.07e-01 0.0616 0.0927 0.797 MAIT L2
ENSG00000162368 CMPK1 913925 sc-eQTL 2.57e-01 0.12 0.106 0.793 NK_CD56bright L2
ENSG00000162368 CMPK1 913925 sc-eQTL 9.09e-01 0.00933 0.0816 0.791 NK_CD56dim L2
ENSG00000162368 CMPK1 913925 sc-eQTL 8.07e-01 -0.0269 0.11 0.799 NK_HLA L2
ENSG00000162368 CMPK1 913925 sc-eQTL 1.11e-01 -0.154 0.0962 0.791 NK_cytokine L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 9.42e-01 0.00726 0.0989 0.763 PB L2
ENSG00000162368 CMPK1 913925 sc-eQTL 4.37e-01 0.103 0.131 0.763 PB L2
ENSG00000162373 BEND5 -529247 sc-eQTL 8.97e-01 0.0182 0.14 0.763 PB L2
ENSG00000123473 STIL 933575 sc-eQTL 5.33e-01 -0.045 0.0721 0.791 Pro_T L2
ENSG00000162368 CMPK1 913925 sc-eQTL 4.97e-01 0.072 0.106 0.791 Pro_T L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 4.37e-01 0.0748 0.096 0.793 Treg L2
ENSG00000162368 CMPK1 913925 sc-eQTL 7.04e-01 -0.0332 0.0874 0.793 Treg L2
ENSG00000162373 BEND5 -529247 sc-eQTL 7.55e-02 0.168 0.0941 0.793 Treg L2
ENSG00000123473 STIL 933575 sc-eQTL 3.21e-01 -0.0986 0.0991 0.8 cDC L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 4.58e-01 -0.087 0.117 0.8 cDC L2
ENSG00000162368 CMPK1 913925 sc-eQTL 2.68e-01 0.12 0.108 0.8 cDC L2
ENSG00000162373 BEND5 -529247 sc-eQTL 5.92e-01 0.051 0.095 0.8 cDC L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 4.71e-01 -0.0693 0.0959 0.793 cMono_IL1B L2
ENSG00000162368 CMPK1 913925 sc-eQTL 2.39e-01 0.103 0.0868 0.793 cMono_IL1B L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 4.10e-01 0.0866 0.105 0.793 cMono_S100A L2
ENSG00000162368 CMPK1 913925 sc-eQTL 6.68e-03 0.272 0.0992 0.793 cMono_S100A L2
ENSG00000123473 STIL 933575 sc-eQTL 9.43e-01 0.0074 0.103 0.794 gdT L2
ENSG00000162368 CMPK1 913925 sc-eQTL 2.85e-02 -0.261 0.118 0.794 gdT L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 8.62e-01 -0.0198 0.114 0.791 intMono L2
ENSG00000162368 CMPK1 913925 sc-eQTL 2.35e-01 0.133 0.112 0.791 intMono L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 8.23e-02 0.154 0.088 0.792 ncMono L2
ENSG00000162368 CMPK1 913925 sc-eQTL 6.26e-01 0.0505 0.103 0.792 ncMono L2
ENSG00000123473 STIL 933575 sc-eQTL 1.36e-01 0.148 0.0988 0.797 pDC L2
ENSG00000132122 SPATA6 -224486 sc-eQTL 1.44e-01 0.165 0.112 0.797 pDC L2
ENSG00000162368 CMPK1 913925 sc-eQTL 1.54e-01 -0.155 0.109 0.797 pDC L2
ENSG00000162373 BEND5 -529247 sc-eQTL 4.18e-01 -0.0869 0.107 0.797 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -224486 sc-eQTL 8.84e-01 0.0159 0.109 0.793 B_Memory LOneK1K
ENSG00000162368 CMPK1 913925 sc-eQTL 9.62e-01 -0.00414 0.0875 0.793 B_Memory LOneK1K
ENSG00000162373 BEND5 -529247 sc-eQTL 8.01e-01 -0.0232 0.0917 0.793 B_Memory LOneK1K
ENSG00000132122 SPATA6 -224486 sc-eQTL 2.59e-01 0.127 0.112 0.793 B_Naive LOneK1K
ENSG00000162368 CMPK1 913925 sc-eQTL 5.91e-01 -0.0472 0.0877 0.793 B_Naive LOneK1K
ENSG00000162373 BEND5 -529247 sc-eQTL 3.50e-01 0.0605 0.0646 0.793 B_Naive LOneK1K
ENSG00000132122 SPATA6 -224486 sc-eQTL 7.23e-01 -0.0327 0.0919 0.793 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 913925 sc-eQTL 1.09e-02 0.201 0.0784 0.793 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -224486 sc-eQTL 1.79e-01 0.109 0.081 0.791 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 913925 sc-eQTL 4.69e-01 0.0689 0.0948 0.791 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 913925 sc-eQTL 2.97e-01 0.0719 0.0688 0.791 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117834 SLC5A9 25037 eQTL 1.97e-05 0.0841 0.0196 0.00484 0.00708 0.18
ENSG00000272491 AL109659.2 18161 eQTL 7.24e-05 0.158 0.0396 0.0 0.0 0.18

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117834 SLC5A9 25037 3.08e-05 1.92e-05 3.15e-06 1.06e-05 2.79e-06 8.91e-06 2.18e-05 2.46e-06 1.64e-05 7.58e-06 2.08e-05 8.32e-06 2.97e-05 7.44e-06 4.55e-06 9.99e-06 8.8e-06 1.56e-05 3.87e-06 4.13e-06 7.79e-06 1.7e-05 1.77e-05 4.56e-06 2.75e-05 5.5e-06 8e-06 6.83e-06 1.8e-05 1.63e-05 1.12e-05 1.01e-06 1.45e-06 4.02e-06 7.35e-06 3.78e-06 1.71e-06 2.4e-06 2.73e-06 1.65e-06 1.21e-06 2.26e-05 2.63e-06 1.33e-07 1.41e-06 2.34e-06 2.4e-06 8.65e-07 5.34e-07
ENSG00000272491 AL109659.2 18161 3.32e-05 2.26e-05 4.31e-06 1.24e-05 3.32e-06 1.05e-05 2.62e-05 3.36e-06 1.87e-05 9.53e-06 2.48e-05 9.87e-06 3.48e-05 8.97e-06 5.23e-06 1.15e-05 1.05e-05 1.84e-05 4.67e-06 4.75e-06 9.2e-06 2.16e-05 2.15e-05 5.48e-06 3.11e-05 5.96e-06 8.4e-06 8.11e-06 2.18e-05 1.93e-05 1.28e-05 1.4e-06 1.66e-06 4.84e-06 8.64e-06 4.37e-06 2.04e-06 2.71e-06 3.31e-06 2.18e-06 1.69e-06 2.67e-05 2.8e-06 2.01e-07 1.97e-06 2.84e-06 3.11e-06 1.28e-06 1.01e-06