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Genes within 1Mb (chr1:48208073:A:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -264135 sc-eQTL 7.18e-01 0.0333 0.092 0.6 B L1
ENSG00000162368 CMPK1 874276 sc-eQTL 2.56e-01 0.0725 0.0636 0.6 B L1
ENSG00000162373 BEND5 -568896 sc-eQTL 9.62e-01 -0.00251 0.0531 0.6 B L1
ENSG00000132122 SPATA6 -264135 sc-eQTL 7.82e-01 -0.0255 0.0922 0.6 CD4T L1
ENSG00000162368 CMPK1 874276 sc-eQTL 8.90e-01 -0.00851 0.0616 0.6 CD4T L1
ENSG00000162373 BEND5 -568896 sc-eQTL 8.73e-01 -0.0131 0.0819 0.6 CD4T L1
ENSG00000162368 CMPK1 874276 sc-eQTL 3.63e-01 0.0518 0.0568 0.6 CD8T L1
ENSG00000162373 BEND5 -568896 sc-eQTL 7.82e-01 -0.0148 0.0532 0.6 CD8T L1
ENSG00000123473 STIL 893926 sc-eQTL 7.51e-01 0.027 0.0851 0.599 DC L1
ENSG00000132122 SPATA6 -264135 sc-eQTL 6.53e-01 0.0429 0.0953 0.599 DC L1
ENSG00000162368 CMPK1 874276 sc-eQTL 2.52e-01 -0.0912 0.0795 0.599 DC L1
ENSG00000162373 BEND5 -568896 sc-eQTL 8.47e-01 -0.0157 0.0808 0.599 DC L1
ENSG00000132122 SPATA6 -264135 sc-eQTL 4.13e-01 0.0556 0.0678 0.6 Mono L1
ENSG00000162368 CMPK1 874276 sc-eQTL 2.08e-01 -0.0848 0.0671 0.6 Mono L1
ENSG00000162368 CMPK1 874276 sc-eQTL 6.14e-01 -0.029 0.0574 0.601 NK L1
ENSG00000123473 STIL 893926 sc-eQTL 7.63e-01 -0.0148 0.0491 0.6 Other_T L1
ENSG00000162368 CMPK1 874276 sc-eQTL 7.50e-01 0.0248 0.0778 0.6 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -264135 sc-eQTL 6.62e-01 0.0373 0.0851 0.599 B_Activated L2
ENSG00000162368 CMPK1 874276 sc-eQTL 3.37e-01 -0.0978 0.102 0.599 B_Activated L2
ENSG00000162373 BEND5 -568896 sc-eQTL 7.68e-01 0.0302 0.102 0.599 B_Activated L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 9.55e-01 0.00525 0.0935 0.603 B_Intermediate L2
ENSG00000162368 CMPK1 874276 sc-eQTL 1.16e-01 0.123 0.0783 0.603 B_Intermediate L2
ENSG00000162373 BEND5 -568896 sc-eQTL 6.29e-01 -0.0411 0.085 0.603 B_Intermediate L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 8.77e-01 0.0132 0.0855 0.597 B_Memory L2
ENSG00000162368 CMPK1 874276 sc-eQTL 4.07e-01 0.0696 0.0837 0.597 B_Memory L2
ENSG00000162373 BEND5 -568896 sc-eQTL 3.63e-01 -0.0901 0.0987 0.597 B_Memory L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 9.56e-01 -0.00531 0.0953 0.6 B_Naive1 L2
ENSG00000162368 CMPK1 874276 sc-eQTL 3.01e-01 0.0792 0.0764 0.6 B_Naive1 L2
ENSG00000162373 BEND5 -568896 sc-eQTL 6.50e-01 -0.0287 0.0633 0.6 B_Naive1 L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 8.61e-01 -0.0175 0.1 0.599 B_Naive2 L2
ENSG00000162368 CMPK1 874276 sc-eQTL 5.26e-01 0.0526 0.0829 0.599 B_Naive2 L2
ENSG00000162373 BEND5 -568896 sc-eQTL 2.51e-01 0.0855 0.0743 0.599 B_Naive2 L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 6.42e-01 0.0388 0.0833 0.593 CD4_CTL L2
ENSG00000162368 CMPK1 874276 sc-eQTL 9.81e-01 0.0023 0.0943 0.593 CD4_CTL L2
ENSG00000162373 BEND5 -568896 sc-eQTL 4.31e-01 -0.0506 0.0641 0.593 CD4_CTL L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 6.83e-01 -0.039 0.0953 0.6 CD4_Naive L2
ENSG00000162368 CMPK1 874276 sc-eQTL 8.32e-01 -0.0125 0.0586 0.6 CD4_Naive L2
ENSG00000162373 BEND5 -568896 sc-eQTL 6.99e-01 -0.0355 0.0916 0.6 CD4_Naive L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 8.57e-01 0.0167 0.0925 0.6 CD4_TCM L2
ENSG00000162368 CMPK1 874276 sc-eQTL 7.65e-01 -0.0192 0.0641 0.6 CD4_TCM L2
ENSG00000162373 BEND5 -568896 sc-eQTL 5.30e-01 -0.0596 0.0948 0.6 CD4_TCM L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 3.57e-01 -0.0919 0.0995 0.6 CD4_TEM L2
ENSG00000162368 CMPK1 874276 sc-eQTL 5.80e-01 0.0456 0.0823 0.6 CD4_TEM L2
ENSG00000162373 BEND5 -568896 sc-eQTL 3.44e-01 0.0783 0.0825 0.6 CD4_TEM L2
ENSG00000162368 CMPK1 874276 sc-eQTL 7.54e-02 0.133 0.0745 0.6 CD8_CTL L2
ENSG00000162373 BEND5 -568896 sc-eQTL 6.24e-01 0.0365 0.0744 0.6 CD8_CTL L2
ENSG00000162368 CMPK1 874276 sc-eQTL 8.23e-01 0.0161 0.072 0.6 CD8_Naive L2
ENSG00000162373 BEND5 -568896 sc-eQTL 8.38e-01 0.0181 0.0888 0.6 CD8_Naive L2
ENSG00000162368 CMPK1 874276 sc-eQTL 3.18e-01 0.0823 0.0821 0.593 CD8_TCM L2
ENSG00000162373 BEND5 -568896 sc-eQTL 7.96e-01 -0.0246 0.095 0.593 CD8_TCM L2
ENSG00000162368 CMPK1 874276 sc-eQTL 8.08e-01 -0.0228 0.0936 0.605 CD8_TEM L2
ENSG00000162373 BEND5 -568896 sc-eQTL 5.08e-01 0.0522 0.0786 0.605 CD8_TEM L2
ENSG00000123473 STIL 893926 sc-eQTL 8.29e-01 -0.0172 0.0796 0.597 MAIT L2
ENSG00000162368 CMPK1 874276 sc-eQTL 4.69e-01 0.0577 0.0795 0.597 MAIT L2
ENSG00000162368 CMPK1 874276 sc-eQTL 7.79e-01 -0.0259 0.092 0.607 NK_CD56bright L2
ENSG00000162368 CMPK1 874276 sc-eQTL 5.60e-01 0.0411 0.0703 0.603 NK_CD56dim L2
ENSG00000162368 CMPK1 874276 sc-eQTL 8.26e-01 -0.0205 0.093 0.61 NK_HLA L2
ENSG00000162368 CMPK1 874276 sc-eQTL 5.85e-01 -0.0468 0.0856 0.603 NK_cytokine L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 1.55e-01 -0.112 0.0785 0.604 PB L2
ENSG00000162368 CMPK1 874276 sc-eQTL 4.04e-01 0.0881 0.105 0.604 PB L2
ENSG00000162373 BEND5 -568896 sc-eQTL 5.24e-01 -0.0718 0.112 0.604 PB L2
ENSG00000123473 STIL 893926 sc-eQTL 2.23e-01 0.0749 0.0613 0.602 Pro_T L2
ENSG00000162368 CMPK1 874276 sc-eQTL 5.45e-01 -0.0546 0.0902 0.602 Pro_T L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 5.55e-01 -0.048 0.0812 0.6 Treg L2
ENSG00000162368 CMPK1 874276 sc-eQTL 2.62e-01 -0.0829 0.0737 0.6 Treg L2
ENSG00000162373 BEND5 -568896 sc-eQTL 5.37e-01 -0.0495 0.0801 0.6 Treg L2
ENSG00000123473 STIL 893926 sc-eQTL 8.81e-01 0.0131 0.0869 0.59 cDC L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 2.36e-01 0.122 0.102 0.59 cDC L2
ENSG00000162368 CMPK1 874276 sc-eQTL 5.01e-01 0.0637 0.0945 0.59 cDC L2
ENSG00000162373 BEND5 -568896 sc-eQTL 3.77e-02 0.172 0.0823 0.59 cDC L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 1.59e-01 0.116 0.0819 0.6 cMono_IL1B L2
ENSG00000162368 CMPK1 874276 sc-eQTL 9.34e-01 -0.00615 0.0746 0.6 cMono_IL1B L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 7.41e-01 -0.0296 0.0895 0.6 cMono_S100A L2
ENSG00000162368 CMPK1 874276 sc-eQTL 2.79e-01 -0.0931 0.0858 0.6 cMono_S100A L2
ENSG00000123473 STIL 893926 sc-eQTL 5.50e-01 0.0577 0.0964 0.597 gdT L2
ENSG00000162368 CMPK1 874276 sc-eQTL 2.32e-01 0.134 0.112 0.597 gdT L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 7.43e-01 -0.0316 0.0962 0.6 intMono L2
ENSG00000162368 CMPK1 874276 sc-eQTL 9.41e-02 -0.159 0.0943 0.6 intMono L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 2.68e-01 -0.0862 0.0777 0.604 ncMono L2
ENSG00000162368 CMPK1 874276 sc-eQTL 9.98e-01 -0.000274 0.0908 0.604 ncMono L2
ENSG00000123473 STIL 893926 sc-eQTL 9.68e-01 -0.00373 0.092 0.605 pDC L2
ENSG00000132122 SPATA6 -264135 sc-eQTL 1.65e-01 -0.145 0.104 0.605 pDC L2
ENSG00000162368 CMPK1 874276 sc-eQTL 7.53e-01 -0.0319 0.101 0.605 pDC L2
ENSG00000162373 BEND5 -568896 sc-eQTL 4.74e-01 -0.071 0.099 0.605 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -264135 sc-eQTL 7.98e-01 0.0241 0.0937 0.6 B_Memory LOneK1K
ENSG00000162368 CMPK1 874276 sc-eQTL 1.17e-01 0.118 0.0746 0.6 B_Memory LOneK1K
ENSG00000162373 BEND5 -568896 sc-eQTL 8.16e-01 -0.0183 0.0786 0.6 B_Memory LOneK1K
ENSG00000132122 SPATA6 -264135 sc-eQTL 9.57e-01 0.00525 0.0967 0.6 B_Naive LOneK1K
ENSG00000162368 CMPK1 874276 sc-eQTL 2.44e-01 0.088 0.0753 0.6 B_Naive LOneK1K
ENSG00000162373 BEND5 -568896 sc-eQTL 8.41e-01 0.0112 0.0557 0.6 B_Naive LOneK1K
ENSG00000132122 SPATA6 -264135 sc-eQTL 3.51e-01 0.0736 0.0788 0.6 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 874276 sc-eQTL 4.06e-01 -0.0568 0.0682 0.6 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -264135 sc-eQTL 4.26e-01 -0.0559 0.07 0.603 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 874276 sc-eQTL 4.84e-01 -0.0573 0.0818 0.603 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 874276 sc-eQTL 6.86e-01 -0.0239 0.059 0.603 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000132122 SPATA6 -264135 eQTL 0.00298 -0.0527 0.0177 0.0 0.0 0.443
ENSG00000162373 BEND5 -568896 eQTL 0.0395 0.0341 0.0165 0.0 0.0 0.443
ENSG00000272491 AL109659.2 -21488 eQTL 7.32e-05 0.121 0.0305 0.0 0.0 0.443

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000272491 AL109659.2 -21488 2.02e-05 2.36e-05 3.89e-06 1.28e-05 3.64e-06 8.91e-06 3.03e-05 3.76e-06 2.01e-05 9.83e-06 2.63e-05 1.05e-05 3.48e-05 1.06e-05 5.19e-06 1.34e-05 1.05e-05 1.87e-05 5.69e-06 4.62e-06 9.17e-06 2.15e-05 2.17e-05 5.74e-06 3.73e-05 5.36e-06 9.65e-06 8.35e-06 2.12e-05 1.71e-05 1.29e-05 1.58e-06 1.61e-06 5.15e-06 9.06e-06 4.06e-06 1.91e-06 2.7e-06 3.31e-06 2.38e-06 1.52e-06 2.9e-05 2.65e-06 3.57e-07 1.95e-06 2.75e-06 3.37e-06 1.27e-06 1.1e-06