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Genes within 1Mb (chr1:48200852:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -271356 sc-eQTL 7.15e-01 0.0332 0.0908 0.592 B L1
ENSG00000162368 CMPK1 867055 sc-eQTL 1.83e-01 0.0837 0.0627 0.592 B L1
ENSG00000162373 BEND5 -576117 sc-eQTL 8.43e-01 0.0104 0.0524 0.592 B L1
ENSG00000132122 SPATA6 -271356 sc-eQTL 8.17e-01 -0.0211 0.0914 0.592 CD4T L1
ENSG00000162368 CMPK1 867055 sc-eQTL 9.81e-01 -0.00147 0.061 0.592 CD4T L1
ENSG00000162373 BEND5 -576117 sc-eQTL 9.96e-01 -0.000415 0.0811 0.592 CD4T L1
ENSG00000162368 CMPK1 867055 sc-eQTL 3.40e-01 0.0536 0.0561 0.592 CD8T L1
ENSG00000162373 BEND5 -576117 sc-eQTL 6.77e-01 -0.0219 0.0526 0.592 CD8T L1
ENSG00000123473 STIL 886705 sc-eQTL 9.41e-01 -0.00622 0.0846 0.59 DC L1
ENSG00000132122 SPATA6 -271356 sc-eQTL 8.29e-01 0.0205 0.0947 0.59 DC L1
ENSG00000162368 CMPK1 867055 sc-eQTL 2.22e-01 -0.0967 0.0789 0.59 DC L1
ENSG00000162373 BEND5 -576117 sc-eQTL 9.95e-01 0.000462 0.0803 0.59 DC L1
ENSG00000132122 SPATA6 -271356 sc-eQTL 4.73e-01 0.0485 0.0674 0.592 Mono L1
ENSG00000162368 CMPK1 867055 sc-eQTL 4.15e-01 -0.0547 0.0669 0.592 Mono L1
ENSG00000162368 CMPK1 867055 sc-eQTL 6.87e-01 -0.0228 0.0566 0.592 NK L1
ENSG00000123473 STIL 886705 sc-eQTL 7.92e-01 0.0129 0.0489 0.592 Other_T L1
ENSG00000162368 CMPK1 867055 sc-eQTL 8.67e-01 0.013 0.0775 0.592 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -271356 sc-eQTL 7.34e-01 0.0289 0.0849 0.589 B_Activated L2
ENSG00000162368 CMPK1 867055 sc-eQTL 3.74e-01 -0.0904 0.101 0.589 B_Activated L2
ENSG00000162373 BEND5 -576117 sc-eQTL 6.92e-01 0.0404 0.102 0.589 B_Activated L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 9.17e-01 0.00964 0.0927 0.594 B_Intermediate L2
ENSG00000162368 CMPK1 867055 sc-eQTL 1.04e-01 0.127 0.0776 0.594 B_Intermediate L2
ENSG00000162373 BEND5 -576117 sc-eQTL 4.36e-01 -0.0658 0.0842 0.594 B_Intermediate L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 8.49e-01 0.0162 0.0849 0.588 B_Memory L2
ENSG00000162368 CMPK1 867055 sc-eQTL 3.08e-01 0.0848 0.083 0.588 B_Memory L2
ENSG00000162373 BEND5 -576117 sc-eQTL 5.40e-01 -0.0603 0.0981 0.588 B_Memory L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 9.24e-01 0.00905 0.0943 0.592 B_Naive1 L2
ENSG00000162368 CMPK1 867055 sc-eQTL 1.83e-01 0.101 0.0755 0.592 B_Naive1 L2
ENSG00000162373 BEND5 -576117 sc-eQTL 6.96e-01 -0.0245 0.0626 0.592 B_Naive1 L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 5.79e-01 -0.0547 0.0985 0.59 B_Naive2 L2
ENSG00000162368 CMPK1 867055 sc-eQTL 5.12e-01 0.0536 0.0816 0.59 B_Naive2 L2
ENSG00000162373 BEND5 -576117 sc-eQTL 2.23e-01 0.0894 0.0731 0.59 B_Naive2 L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 6.59e-01 0.0363 0.0821 0.582 CD4_CTL L2
ENSG00000162368 CMPK1 867055 sc-eQTL 9.41e-01 -0.00688 0.093 0.582 CD4_CTL L2
ENSG00000162373 BEND5 -576117 sc-eQTL 3.00e-01 -0.0656 0.0631 0.582 CD4_CTL L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 6.64e-01 -0.0409 0.0941 0.592 CD4_Naive L2
ENSG00000162368 CMPK1 867055 sc-eQTL 9.99e-01 7.56e-05 0.0579 0.592 CD4_Naive L2
ENSG00000162373 BEND5 -576117 sc-eQTL 8.39e-01 -0.0185 0.0905 0.592 CD4_Naive L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 8.21e-01 0.0208 0.092 0.592 CD4_TCM L2
ENSG00000162368 CMPK1 867055 sc-eQTL 8.06e-01 -0.0157 0.0637 0.592 CD4_TCM L2
ENSG00000162373 BEND5 -576117 sc-eQTL 3.49e-01 -0.0884 0.0942 0.592 CD4_TCM L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 3.91e-01 -0.0848 0.0987 0.592 CD4_TEM L2
ENSG00000162368 CMPK1 867055 sc-eQTL 7.98e-01 0.0209 0.0817 0.592 CD4_TEM L2
ENSG00000162373 BEND5 -576117 sc-eQTL 4.55e-01 0.0613 0.0819 0.592 CD4_TEM L2
ENSG00000162368 CMPK1 867055 sc-eQTL 5.79e-02 0.14 0.0734 0.592 CD8_CTL L2
ENSG00000162373 BEND5 -576117 sc-eQTL 8.05e-01 0.0182 0.0734 0.592 CD8_CTL L2
ENSG00000162368 CMPK1 867055 sc-eQTL 8.90e-01 0.00989 0.0716 0.592 CD8_Naive L2
ENSG00000162373 BEND5 -576117 sc-eQTL 7.82e-01 0.0244 0.0883 0.592 CD8_Naive L2
ENSG00000162368 CMPK1 867055 sc-eQTL 4.23e-01 0.0658 0.082 0.583 CD8_TCM L2
ENSG00000162373 BEND5 -576117 sc-eQTL 9.99e-01 -0.000134 0.0948 0.583 CD8_TCM L2
ENSG00000162368 CMPK1 867055 sc-eQTL 8.56e-01 -0.0168 0.0927 0.596 CD8_TEM L2
ENSG00000162373 BEND5 -576117 sc-eQTL 9.37e-01 0.00612 0.0779 0.596 CD8_TEM L2
ENSG00000123473 STIL 886705 sc-eQTL 9.96e-01 0.000368 0.0792 0.589 MAIT L2
ENSG00000162368 CMPK1 867055 sc-eQTL 5.54e-01 0.0469 0.0792 0.589 MAIT L2
ENSG00000162368 CMPK1 867055 sc-eQTL 8.00e-01 -0.0229 0.0905 0.596 NK_CD56bright L2
ENSG00000162368 CMPK1 867055 sc-eQTL 5.50e-01 0.0417 0.0695 0.593 NK_CD56dim L2
ENSG00000162368 CMPK1 867055 sc-eQTL 8.02e-01 -0.0229 0.0912 0.6 NK_HLA L2
ENSG00000162368 CMPK1 867055 sc-eQTL 4.81e-01 -0.0595 0.0844 0.593 NK_cytokine L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 1.53e-01 -0.114 0.0795 0.604 PB L2
ENSG00000162368 CMPK1 867055 sc-eQTL 3.82e-01 0.0936 0.107 0.604 PB L2
ENSG00000162373 BEND5 -576117 sc-eQTL 5.51e-01 -0.0681 0.114 0.604 PB L2
ENSG00000123473 STIL 886705 sc-eQTL 1.22e-01 0.0943 0.0608 0.593 Pro_T L2
ENSG00000162368 CMPK1 867055 sc-eQTL 5.97e-01 -0.0475 0.0896 0.593 Pro_T L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 5.70e-01 -0.0454 0.0797 0.592 Treg L2
ENSG00000162368 CMPK1 867055 sc-eQTL 2.77e-01 -0.0789 0.0723 0.592 Treg L2
ENSG00000162373 BEND5 -576117 sc-eQTL 9.05e-01 -0.00938 0.0787 0.592 Treg L2
ENSG00000123473 STIL 886705 sc-eQTL 9.02e-01 -0.0106 0.0858 0.578 cDC L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 4.04e-01 0.0846 0.101 0.578 cDC L2
ENSG00000162368 CMPK1 867055 sc-eQTL 3.47e-01 0.0877 0.0931 0.578 cDC L2
ENSG00000162373 BEND5 -576117 sc-eQTL 2.99e-02 0.177 0.0811 0.578 cDC L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 1.93e-01 0.107 0.0816 0.592 cMono_IL1B L2
ENSG00000162368 CMPK1 867055 sc-eQTL 9.97e-01 0.000287 0.0743 0.592 cMono_IL1B L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 5.65e-01 -0.0512 0.0889 0.592 cMono_S100A L2
ENSG00000162368 CMPK1 867055 sc-eQTL 3.54e-01 -0.0793 0.0853 0.592 cMono_S100A L2
ENSG00000123473 STIL 886705 sc-eQTL 5.33e-01 0.0592 0.0948 0.582 gdT L2
ENSG00000162368 CMPK1 867055 sc-eQTL 2.32e-01 0.132 0.11 0.582 gdT L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 5.65e-01 -0.0552 0.0957 0.591 intMono L2
ENSG00000162368 CMPK1 867055 sc-eQTL 1.10e-01 -0.151 0.0939 0.591 intMono L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 5.17e-01 -0.05 0.0771 0.595 ncMono L2
ENSG00000162368 CMPK1 867055 sc-eQTL 9.94e-01 0.000724 0.0899 0.595 ncMono L2
ENSG00000123473 STIL 886705 sc-eQTL 6.57e-01 -0.0404 0.0908 0.59 pDC L2
ENSG00000132122 SPATA6 -271356 sc-eQTL 1.02e-01 -0.168 0.102 0.59 pDC L2
ENSG00000162368 CMPK1 867055 sc-eQTL 4.41e-01 -0.077 0.0996 0.59 pDC L2
ENSG00000162373 BEND5 -576117 sc-eQTL 5.65e-01 -0.0564 0.0978 0.59 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -271356 sc-eQTL 7.39e-01 0.0311 0.0932 0.592 B_Memory LOneK1K
ENSG00000162368 CMPK1 867055 sc-eQTL 8.72e-02 0.127 0.0741 0.592 B_Memory LOneK1K
ENSG00000162373 BEND5 -576117 sc-eQTL 7.01e-01 -0.03 0.0782 0.592 B_Memory LOneK1K
ENSG00000132122 SPATA6 -271356 sc-eQTL 9.80e-01 -0.00237 0.0955 0.592 B_Naive LOneK1K
ENSG00000162368 CMPK1 867055 sc-eQTL 1.99e-01 0.0956 0.0743 0.592 B_Naive LOneK1K
ENSG00000162373 BEND5 -576117 sc-eQTL 7.75e-01 0.0158 0.055 0.592 B_Naive LOneK1K
ENSG00000132122 SPATA6 -271356 sc-eQTL 4.84e-01 0.055 0.0784 0.592 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 867055 sc-eQTL 6.22e-01 -0.0336 0.068 0.592 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -271356 sc-eQTL 5.71e-01 -0.0395 0.0697 0.595 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 867055 sc-eQTL 6.27e-01 -0.0396 0.0813 0.595 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 867055 sc-eQTL 7.75e-01 -0.0167 0.0583 0.593 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000132122 SPATA6 -271356 eQTL 0.0153 -0.0433 0.0178 0.0 0.0 0.458
ENSG00000272491 AL109659.2 -28709 eQTL 1.56e-06 0.147 0.0305 0.0 0.0 0.458

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000272491 AL109659.2 -28709 1.95e-05 2.73e-05 5.89e-06 1.51e-05 5.65e-06 1.37e-05 3.63e-05 4.69e-06 2.55e-05 1.38e-05 3.39e-05 1.63e-05 4.8e-05 1.32e-05 6.73e-06 1.59e-05 1.55e-05 2.16e-05 8.79e-06 7.7e-06 1.42e-05 2.81e-05 2.61e-05 9.41e-06 4.24e-05 8.02e-06 1.35e-05 1.19e-05 3.19e-05 3.11e-05 1.73e-05 1.63e-06 3.98e-06 8.17e-06 1.17e-05 6.29e-06 3.92e-06 3.42e-06 6.16e-06 4.01e-06 1.87e-06 3.02e-05 3.24e-06 5.03e-07 2.75e-06 4.63e-06 4.14e-06 2.19e-06 1.53e-06