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Genes within 1Mb (chr1:48114392:CTT:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -357816 sc-eQTL 7.04e-01 -0.0379 0.0997 0.701 B L1
ENSG00000162368 CMPK1 780595 sc-eQTL 5.72e-01 0.0391 0.0691 0.701 B L1
ENSG00000162373 BEND5 -662577 sc-eQTL 8.59e-02 -0.0987 0.0572 0.701 B L1
ENSG00000132122 SPATA6 -357816 sc-eQTL 7.42e-01 -0.033 0.1 0.701 CD4T L1
ENSG00000162368 CMPK1 780595 sc-eQTL 3.61e-01 0.061 0.0667 0.701 CD4T L1
ENSG00000162373 BEND5 -662577 sc-eQTL 1.05e-01 -0.144 0.0883 0.701 CD4T L1
ENSG00000162368 CMPK1 780595 sc-eQTL 1.55e-01 0.088 0.0616 0.701 CD8T L1
ENSG00000162373 BEND5 -662577 sc-eQTL 3.18e-01 -0.0578 0.0578 0.701 CD8T L1
ENSG00000123473 STIL 800245 sc-eQTL 2.82e-01 -0.104 0.0965 0.7 DC L1
ENSG00000132122 SPATA6 -357816 sc-eQTL 2.59e-01 -0.122 0.108 0.7 DC L1
ENSG00000162366 PDZK1IP1 923348 sc-eQTL 7.33e-01 0.0313 0.0918 0.7 DC L1
ENSG00000162368 CMPK1 780595 sc-eQTL 8.80e-01 -0.0137 0.0906 0.7 DC L1
ENSG00000162373 BEND5 -662577 sc-eQTL 8.87e-01 -0.0131 0.0919 0.7 DC L1
ENSG00000132122 SPATA6 -357816 sc-eQTL 4.40e-01 -0.0571 0.0738 0.701 Mono L1
ENSG00000162368 CMPK1 780595 sc-eQTL 6.63e-01 -0.032 0.0733 0.701 Mono L1
ENSG00000162368 CMPK1 780595 sc-eQTL 7.89e-01 0.017 0.0634 0.7 NK L1
ENSG00000123473 STIL 800245 sc-eQTL 2.56e-01 -0.0619 0.0543 0.701 Other_T L1
ENSG00000162368 CMPK1 780595 sc-eQTL 1.42e-01 0.126 0.0858 0.701 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -357816 sc-eQTL 2.09e-01 -0.114 0.0907 0.704 B_Activated L2
ENSG00000162368 CMPK1 780595 sc-eQTL 6.76e-01 -0.0456 0.109 0.704 B_Activated L2
ENSG00000162373 BEND5 -662577 sc-eQTL 7.12e-01 -0.0404 0.109 0.704 B_Activated L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 3.13e-01 0.103 0.102 0.7 B_Intermediate L2
ENSG00000162368 CMPK1 780595 sc-eQTL 9.65e-01 -0.00375 0.0861 0.7 B_Intermediate L2
ENSG00000162373 BEND5 -662577 sc-eQTL 4.01e-01 -0.0781 0.0928 0.7 B_Intermediate L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 9.25e-02 -0.156 0.0921 0.7 B_Memory L2
ENSG00000162368 CMPK1 780595 sc-eQTL 5.58e-01 -0.0533 0.0908 0.7 B_Memory L2
ENSG00000162373 BEND5 -662577 sc-eQTL 6.99e-01 0.0415 0.107 0.7 B_Memory L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 8.58e-01 -0.0183 0.102 0.701 B_Naive1 L2
ENSG00000162368 CMPK1 780595 sc-eQTL 2.41e-01 0.0967 0.0822 0.701 B_Naive1 L2
ENSG00000162373 BEND5 -662577 sc-eQTL 6.06e-01 -0.0352 0.068 0.701 B_Naive1 L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 2.55e-01 -0.12 0.105 0.7 B_Naive2 L2
ENSG00000162368 CMPK1 780595 sc-eQTL 4.69e-01 0.0635 0.0876 0.7 B_Naive2 L2
ENSG00000162373 BEND5 -662577 sc-eQTL 2.36e-01 -0.0933 0.0784 0.7 B_Naive2 L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 9.06e-01 -0.0108 0.0917 0.705 CD4_CTL L2
ENSG00000162368 CMPK1 780595 sc-eQTL 6.18e-01 -0.0518 0.104 0.705 CD4_CTL L2
ENSG00000162373 BEND5 -662577 sc-eQTL 5.02e-01 -0.0475 0.0706 0.705 CD4_CTL L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 9.92e-01 0.00106 0.103 0.701 CD4_Naive L2
ENSG00000162368 CMPK1 780595 sc-eQTL 2.89e-01 0.0673 0.0633 0.701 CD4_Naive L2
ENSG00000162373 BEND5 -662577 sc-eQTL 3.38e-01 -0.0951 0.0991 0.701 CD4_Naive L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 1.87e-01 -0.135 0.102 0.701 CD4_TCM L2
ENSG00000162368 CMPK1 780595 sc-eQTL 4.24e-01 0.0566 0.0707 0.701 CD4_TCM L2
ENSG00000162373 BEND5 -662577 sc-eQTL 2.66e-02 -0.232 0.104 0.701 CD4_TCM L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 5.19e-02 0.209 0.107 0.701 CD4_TEM L2
ENSG00000162368 CMPK1 780595 sc-eQTL 7.51e-02 0.158 0.0885 0.701 CD4_TEM L2
ENSG00000162373 BEND5 -662577 sc-eQTL 1.41e-01 -0.131 0.0891 0.701 CD4_TEM L2
ENSG00000162368 CMPK1 780595 sc-eQTL 2.71e-01 0.0907 0.0822 0.701 CD8_CTL L2
ENSG00000162373 BEND5 -662577 sc-eQTL 4.79e-01 0.0579 0.0817 0.701 CD8_CTL L2
ENSG00000162368 CMPK1 780595 sc-eQTL 9.53e-01 -0.00469 0.0794 0.701 CD8_Naive L2
ENSG00000162373 BEND5 -662577 sc-eQTL 7.37e-01 -0.0329 0.0979 0.701 CD8_Naive L2
ENSG00000162368 CMPK1 780595 sc-eQTL 8.81e-01 -0.0138 0.0919 0.701 CD8_TCM L2
ENSG00000162373 BEND5 -662577 sc-eQTL 1.31e-01 -0.16 0.105 0.701 CD8_TCM L2
ENSG00000162368 CMPK1 780595 sc-eQTL 8.29e-03 0.261 0.0978 0.699 CD8_TEM L2
ENSG00000162373 BEND5 -662577 sc-eQTL 3.18e-01 0.0836 0.0835 0.699 CD8_TEM L2
ENSG00000123473 STIL 800245 sc-eQTL 9.48e-01 0.00578 0.0886 0.699 MAIT L2
ENSG00000162368 CMPK1 780595 sc-eQTL 2.31e-01 0.106 0.0883 0.699 MAIT L2
ENSG00000162368 CMPK1 780595 sc-eQTL 9.46e-01 -0.00689 0.102 0.698 NK_CD56bright L2
ENSG00000162368 CMPK1 780595 sc-eQTL 5.77e-01 0.0433 0.0775 0.7 NK_CD56dim L2
ENSG00000162368 CMPK1 780595 sc-eQTL 9.67e-01 -0.00409 0.0978 0.696 NK_HLA L2
ENSG00000162368 CMPK1 780595 sc-eQTL 3.39e-01 0.0896 0.0934 0.7 NK_cytokine L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 6.42e-01 0.0402 0.0863 0.73 PB L2
ENSG00000162368 CMPK1 780595 sc-eQTL 2.83e-01 -0.123 0.114 0.73 PB L2
ENSG00000162373 BEND5 -662577 sc-eQTL 8.32e-01 0.026 0.123 0.73 PB L2
ENSG00000123473 STIL 800245 sc-eQTL 4.21e-01 -0.0533 0.066 0.7 Pro_T L2
ENSG00000162368 CMPK1 780595 sc-eQTL 5.39e-01 -0.0596 0.0969 0.7 Pro_T L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 9.06e-01 -0.0104 0.0876 0.701 Treg L2
ENSG00000162368 CMPK1 780595 sc-eQTL 4.67e-01 0.058 0.0796 0.701 Treg L2
ENSG00000162373 BEND5 -662577 sc-eQTL 3.00e-02 -0.187 0.0855 0.701 Treg L2
ENSG00000123473 STIL 800245 sc-eQTL 5.98e-01 -0.0507 0.096 0.707 cDC L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 2.81e-01 -0.122 0.113 0.707 cDC L2
ENSG00000162366 PDZK1IP1 923348 sc-eQTL 6.86e-01 0.0376 0.0928 0.707 cDC L2
ENSG00000162368 CMPK1 780595 sc-eQTL 3.65e-01 -0.0948 0.104 0.707 cDC L2
ENSG00000162373 BEND5 -662577 sc-eQTL 1.20e-02 -0.229 0.0904 0.707 cDC L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 8.68e-01 -0.0149 0.0897 0.701 cMono_IL1B L2
ENSG00000162368 CMPK1 780595 sc-eQTL 8.94e-01 0.0108 0.0813 0.701 cMono_IL1B L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 2.14e-01 -0.12 0.0965 0.701 cMono_S100A L2
ENSG00000162368 CMPK1 780595 sc-eQTL 6.48e-01 -0.0425 0.093 0.701 cMono_S100A L2
ENSG00000123473 STIL 800245 sc-eQTL 7.79e-01 -0.0289 0.103 0.694 gdT L2
ENSG00000162368 CMPK1 780595 sc-eQTL 1.50e-01 0.172 0.119 0.694 gdT L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 8.59e-01 0.0188 0.106 0.7 intMono L2
ENSG00000162368 CMPK1 780595 sc-eQTL 2.35e-01 0.124 0.104 0.7 intMono L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 7.06e-01 0.031 0.0819 0.69 ncMono L2
ENSG00000162368 CMPK1 780595 sc-eQTL 2.17e-01 -0.118 0.0952 0.69 ncMono L2
ENSG00000123473 STIL 800245 sc-eQTL 4.36e-01 -0.0794 0.102 0.703 pDC L2
ENSG00000132122 SPATA6 -357816 sc-eQTL 8.52e-01 -0.0216 0.115 0.703 pDC L2
ENSG00000162366 PDZK1IP1 923348 sc-eQTL 2.23e-01 -0.114 0.0932 0.703 pDC L2
ENSG00000162368 CMPK1 780595 sc-eQTL 3.93e-01 -0.0956 0.112 0.703 pDC L2
ENSG00000162373 BEND5 -662577 sc-eQTL 1.43e-01 0.16 0.109 0.703 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -357816 sc-eQTL 8.54e-01 -0.019 0.103 0.701 B_Memory LOneK1K
ENSG00000162368 CMPK1 780595 sc-eQTL 9.58e-01 0.00432 0.0823 0.701 B_Memory LOneK1K
ENSG00000162373 BEND5 -662577 sc-eQTL 4.24e-01 -0.0691 0.0861 0.701 B_Memory LOneK1K
ENSG00000132122 SPATA6 -357816 sc-eQTL 5.01e-01 -0.0699 0.104 0.701 B_Naive LOneK1K
ENSG00000162368 CMPK1 780595 sc-eQTL 3.74e-01 0.0721 0.081 0.701 B_Naive LOneK1K
ENSG00000162373 BEND5 -662577 sc-eQTL 2.08e-01 -0.0753 0.0596 0.701 B_Naive LOneK1K
ENSG00000132122 SPATA6 -357816 sc-eQTL 6.28e-01 -0.0417 0.086 0.701 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 780595 sc-eQTL 3.63e-01 -0.0679 0.0744 0.701 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -357816 sc-eQTL 7.60e-01 0.0233 0.0762 0.698 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 780595 sc-eQTL 8.31e-01 0.019 0.089 0.698 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 780595 sc-eQTL 8.12e-01 0.0156 0.0655 0.7 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117834 SLC5A9 -108293 eQTL 0.0377 -0.0356 0.0171 0.0 0.0 0.297
ENSG00000132122 SPATA6 -357816 eQTL 0.00415 0.0572 0.0199 0.0 0.0 0.297
ENSG00000272491 AL109659.2 -115169 eQTL 0.00778 -0.0918 0.0344 0.0 0.0 0.297

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000132122 SPATA6 -357816 7.57e-07 8.47e-07 3.25e-07 6.45e-07 1.06e-07 4.23e-07 1.58e-06 5.89e-08 8.7e-07 3.22e-07 1.07e-06 2.49e-07 1.63e-06 2.1e-07 1.12e-07 5.29e-07 7.74e-07 4.31e-07 3.51e-07 1.28e-07 3.99e-07 6.27e-07 6.63e-07 1.21e-07 1.52e-06 2.64e-07 6.37e-07 3.95e-07 5.42e-07 1.2e-06 5.37e-07 6.2e-08 4.23e-08 2.98e-07 3.71e-07 1.16e-07 6.29e-08 6.56e-08 6.03e-07 3.03e-07 5.94e-08 4.42e-07 1.21e-08 1.43e-08 4.99e-08 4.53e-08 7.8e-08 1.93e-09 4.88e-08
ENSG00000272491 AL109659.2 -115169 4.58e-06 5.69e-06 1.31e-06 3.92e-06 1.71e-06 3.28e-06 9.57e-06 1.03e-06 4.89e-06 4.06e-06 8.89e-06 3.22e-06 1.31e-05 3.13e-06 1.33e-06 4.63e-06 4.11e-06 3.78e-06 1.51e-06 1.64e-06 4.54e-06 7.67e-06 6.71e-06 1.47e-06 9.1e-06 2.27e-06 2.72e-06 3.43e-06 6.71e-06 9.15e-06 3.43e-06 5.11e-07 7.51e-07 2.53e-06 2.09e-06 1.25e-06 1.05e-06 4.26e-07 3.24e-06 9.96e-07 8.23e-07 4.67e-06 3.83e-07 1.66e-07 3.62e-07 1.01e-06 9.78e-07 2.38e-07 1.78e-07