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Genes within 1Mb (chr1:48096102:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -376106 sc-eQTL 7.62e-01 0.0307 0.101 0.263 B L1
ENSG00000162368 CMPK1 762305 sc-eQTL 9.40e-01 0.00524 0.07 0.263 B L1
ENSG00000162373 BEND5 -680867 sc-eQTL 1.98e-01 0.075 0.0581 0.263 B L1
ENSG00000132122 SPATA6 -376106 sc-eQTL 9.07e-01 -0.0119 0.101 0.263 CD4T L1
ENSG00000162368 CMPK1 762305 sc-eQTL 6.75e-01 -0.0284 0.0677 0.263 CD4T L1
ENSG00000162373 BEND5 -680867 sc-eQTL 1.36e-01 0.134 0.0895 0.263 CD4T L1
ENSG00000162368 CMPK1 762305 sc-eQTL 1.80e-01 -0.0833 0.0619 0.263 CD8T L1
ENSG00000162373 BEND5 -680867 sc-eQTL 8.86e-01 0.00832 0.0582 0.263 CD8T L1
ENSG00000123473 STIL 781955 sc-eQTL 4.94e-01 0.0661 0.0964 0.264 DC L1
ENSG00000132122 SPATA6 -376106 sc-eQTL 4.32e-01 0.085 0.108 0.264 DC L1
ENSG00000162366 PDZK1IP1 905058 sc-eQTL 8.93e-01 -0.0124 0.0916 0.264 DC L1
ENSG00000162368 CMPK1 762305 sc-eQTL 9.66e-01 0.0039 0.0904 0.264 DC L1
ENSG00000162373 BEND5 -680867 sc-eQTL 8.14e-01 0.0216 0.0917 0.264 DC L1
ENSG00000132122 SPATA6 -376106 sc-eQTL 8.31e-01 0.016 0.0748 0.263 Mono L1
ENSG00000162368 CMPK1 762305 sc-eQTL 2.97e-01 0.0774 0.074 0.263 Mono L1
ENSG00000162368 CMPK1 762305 sc-eQTL 8.47e-01 0.0123 0.0637 0.264 NK L1
ENSG00000123473 STIL 781955 sc-eQTL 8.02e-02 0.0968 0.055 0.263 Other_T L1
ENSG00000162368 CMPK1 762305 sc-eQTL 1.14e-01 -0.139 0.0872 0.263 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -376106 sc-eQTL 5.54e-01 0.054 0.091 0.26 B_Activated L2
ENSG00000162368 CMPK1 762305 sc-eQTL 7.89e-01 -0.0292 0.109 0.26 B_Activated L2
ENSG00000162373 BEND5 -680867 sc-eQTL 5.64e-01 0.0631 0.109 0.26 B_Activated L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 4.95e-01 -0.0697 0.102 0.264 B_Intermediate L2
ENSG00000162368 CMPK1 762305 sc-eQTL 3.67e-01 0.0776 0.0859 0.264 B_Intermediate L2
ENSG00000162373 BEND5 -680867 sc-eQTL 9.17e-01 0.00973 0.0929 0.264 B_Intermediate L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 1.34e-01 0.14 0.093 0.263 B_Memory L2
ENSG00000162368 CMPK1 762305 sc-eQTL 2.35e-01 0.109 0.0913 0.263 B_Memory L2
ENSG00000162373 BEND5 -680867 sc-eQTL 8.77e-01 0.0167 0.108 0.263 B_Memory L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 6.04e-01 0.0538 0.104 0.263 B_Naive1 L2
ENSG00000162368 CMPK1 762305 sc-eQTL 5.32e-01 -0.0521 0.0833 0.263 B_Naive1 L2
ENSG00000162373 BEND5 -680867 sc-eQTL 8.76e-01 0.0108 0.0688 0.263 B_Naive1 L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 7.69e-01 0.0315 0.107 0.264 B_Naive2 L2
ENSG00000162368 CMPK1 762305 sc-eQTL 5.65e-01 -0.0511 0.0887 0.264 B_Naive2 L2
ENSG00000162373 BEND5 -680867 sc-eQTL 3.93e-01 0.068 0.0795 0.264 B_Naive2 L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 3.57e-01 -0.0838 0.0908 0.259 CD4_CTL L2
ENSG00000162368 CMPK1 762305 sc-eQTL 6.76e-01 0.0431 0.103 0.259 CD4_CTL L2
ENSG00000162373 BEND5 -680867 sc-eQTL 2.82e-01 0.0753 0.0699 0.259 CD4_CTL L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 8.21e-01 -0.0235 0.104 0.263 CD4_Naive L2
ENSG00000162368 CMPK1 762305 sc-eQTL 6.72e-01 -0.0271 0.0637 0.263 CD4_Naive L2
ENSG00000162373 BEND5 -680867 sc-eQTL 4.35e-01 0.078 0.0996 0.263 CD4_Naive L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 4.70e-01 0.0748 0.103 0.263 CD4_TCM L2
ENSG00000162368 CMPK1 762305 sc-eQTL 7.00e-01 -0.0277 0.0717 0.263 CD4_TCM L2
ENSG00000162373 BEND5 -680867 sc-eQTL 1.90e-01 0.139 0.106 0.263 CD4_TCM L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 1.04e-01 -0.177 0.109 0.263 CD4_TEM L2
ENSG00000162368 CMPK1 762305 sc-eQTL 3.84e-02 -0.186 0.0894 0.263 CD4_TEM L2
ENSG00000162373 BEND5 -680867 sc-eQTL 2.36e-01 0.107 0.0903 0.263 CD4_TEM L2
ENSG00000162368 CMPK1 762305 sc-eQTL 4.20e-01 -0.0663 0.0821 0.263 CD8_CTL L2
ENSG00000162373 BEND5 -680867 sc-eQTL 8.39e-01 0.0165 0.0816 0.263 CD8_CTL L2
ENSG00000162368 CMPK1 762305 sc-eQTL 8.59e-01 -0.0141 0.0795 0.263 CD8_Naive L2
ENSG00000162373 BEND5 -680867 sc-eQTL 9.08e-01 0.0114 0.098 0.263 CD8_Naive L2
ENSG00000162368 CMPK1 762305 sc-eQTL 7.47e-01 0.0295 0.0912 0.264 CD8_TCM L2
ENSG00000162373 BEND5 -680867 sc-eQTL 2.36e-01 0.125 0.105 0.264 CD8_TCM L2
ENSG00000162368 CMPK1 762305 sc-eQTL 1.55e-02 -0.241 0.0989 0.265 CD8_TEM L2
ENSG00000162373 BEND5 -680867 sc-eQTL 2.14e-02 -0.193 0.0832 0.265 CD8_TEM L2
ENSG00000123473 STIL 781955 sc-eQTL 6.26e-01 0.0436 0.0895 0.264 MAIT L2
ENSG00000162368 CMPK1 762305 sc-eQTL 4.15e-01 -0.073 0.0894 0.264 MAIT L2
ENSG00000162368 CMPK1 762305 sc-eQTL 2.76e-01 0.11 0.1 0.264 NK_CD56bright L2
ENSG00000162368 CMPK1 762305 sc-eQTL 5.08e-01 -0.0516 0.0778 0.263 NK_CD56dim L2
ENSG00000162368 CMPK1 762305 sc-eQTL 9.90e-01 -0.0012 0.0996 0.272 NK_HLA L2
ENSG00000162368 CMPK1 762305 sc-eQTL 4.89e-01 -0.0649 0.0936 0.263 NK_cytokine L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 5.74e-01 -0.0505 0.0894 0.241 PB L2
ENSG00000162368 CMPK1 762305 sc-eQTL 1.69e-01 0.164 0.118 0.241 PB L2
ENSG00000162373 BEND5 -680867 sc-eQTL 7.33e-01 -0.0435 0.127 0.241 PB L2
ENSG00000123473 STIL 781955 sc-eQTL 2.33e-01 0.0803 0.0672 0.263 Pro_T L2
ENSG00000162368 CMPK1 762305 sc-eQTL 7.52e-01 0.0313 0.0989 0.263 Pro_T L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 7.18e-01 0.0315 0.0873 0.263 Treg L2
ENSG00000162368 CMPK1 762305 sc-eQTL 4.53e-01 -0.0597 0.0793 0.263 Treg L2
ENSG00000162373 BEND5 -680867 sc-eQTL 4.41e-02 0.173 0.0853 0.263 Treg L2
ENSG00000123473 STIL 781955 sc-eQTL 7.26e-01 -0.0335 0.0952 0.256 cDC L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 2.01e-01 0.144 0.112 0.256 cDC L2
ENSG00000162366 PDZK1IP1 905058 sc-eQTL 7.29e-01 -0.0319 0.092 0.256 cDC L2
ENSG00000162368 CMPK1 762305 sc-eQTL 2.33e-01 0.124 0.103 0.256 cDC L2
ENSG00000162373 BEND5 -680867 sc-eQTL 3.90e-03 0.261 0.0891 0.256 cDC L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 8.33e-01 -0.0192 0.0909 0.263 cMono_IL1B L2
ENSG00000162368 CMPK1 762305 sc-eQTL 7.57e-01 0.0255 0.0824 0.263 cMono_IL1B L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 6.74e-01 0.0412 0.0978 0.263 cMono_S100A L2
ENSG00000162368 CMPK1 762305 sc-eQTL 7.55e-01 0.0293 0.094 0.263 cMono_S100A L2
ENSG00000123473 STIL 781955 sc-eQTL 3.65e-01 0.0931 0.103 0.264 gdT L2
ENSG00000162368 CMPK1 762305 sc-eQTL 2.05e-01 -0.151 0.119 0.264 gdT L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 4.24e-01 -0.085 0.106 0.262 intMono L2
ENSG00000162368 CMPK1 762305 sc-eQTL 3.98e-01 -0.0887 0.105 0.262 intMono L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 8.02e-01 0.0207 0.0825 0.274 ncMono L2
ENSG00000162368 CMPK1 762305 sc-eQTL 1.59e-01 0.135 0.0957 0.274 ncMono L2
ENSG00000123473 STIL 781955 sc-eQTL 3.17e-01 0.101 0.101 0.26 pDC L2
ENSG00000132122 SPATA6 -376106 sc-eQTL 9.54e-01 0.0066 0.115 0.26 pDC L2
ENSG00000162366 PDZK1IP1 905058 sc-eQTL 2.45e-01 0.108 0.0925 0.26 pDC L2
ENSG00000162368 CMPK1 762305 sc-eQTL 9.56e-01 -0.00615 0.111 0.26 pDC L2
ENSG00000162373 BEND5 -680867 sc-eQTL 1.87e-01 -0.143 0.108 0.26 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -376106 sc-eQTL 7.66e-01 0.0309 0.104 0.263 B_Memory LOneK1K
ENSG00000162368 CMPK1 762305 sc-eQTL 5.04e-01 0.0555 0.0829 0.263 B_Memory LOneK1K
ENSG00000162373 BEND5 -680867 sc-eQTL 7.09e-01 0.0325 0.0869 0.263 B_Memory LOneK1K
ENSG00000132122 SPATA6 -376106 sc-eQTL 5.39e-01 0.0645 0.105 0.263 B_Naive LOneK1K
ENSG00000162368 CMPK1 762305 sc-eQTL 5.52e-01 -0.0487 0.0819 0.263 B_Naive LOneK1K
ENSG00000162373 BEND5 -680867 sc-eQTL 4.44e-01 0.0463 0.0604 0.263 B_Naive LOneK1K
ENSG00000132122 SPATA6 -376106 sc-eQTL 8.90e-01 -0.012 0.0871 0.263 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 762305 sc-eQTL 2.14e-01 0.0938 0.0752 0.263 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -376106 sc-eQTL 9.82e-01 0.00173 0.0767 0.265 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 762305 sc-eQTL 7.91e-01 0.0237 0.0895 0.265 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 762305 sc-eQTL 9.03e-01 0.00809 0.066 0.263 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117834 SLC5A9 -126583 eQTL 0.0367 0.0384 0.0183 0.0 0.0 0.253
ENSG00000132122 SPATA6 -376106 eQTL 0.0223 -0.0489 0.0214 0.0 0.0 0.253
ENSG00000272491 AL109659.2 -133459 eQTL 0.000744 0.125 0.0368 0.0 0.0 0.253

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000272491 AL109659.2 -133459 4.27e-06 3.66e-06 6.69e-07 2.02e-06 8.63e-07 9.09e-07 2.69e-06 9.93e-07 3.03e-06 1.7e-06 3.95e-06 2.2e-06 6.16e-06 1.37e-06 9.71e-07 2.35e-06 1.58e-06 2.39e-06 1.45e-06 9.91e-07 1.92e-06 3.79e-06 3.3e-06 1.85e-06 4.78e-06 1.29e-06 1.84e-06 1.48e-06 3.76e-06 3.39e-06 2.03e-06 4.73e-07 7.34e-07 1.74e-06 1.86e-06 9.24e-07 9.22e-07 4.68e-07 1.39e-06 3.28e-07 4.42e-07 4.65e-06 4.46e-07 1.81e-07 3.58e-07 3.21e-07 6.79e-07 2.35e-07 3.03e-07