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Genes within 1Mb (chr1:48059966:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -412242 sc-eQTL 4.78e-01 0.0696 0.0978 0.246 B L1
ENSG00000162368 CMPK1 726169 sc-eQTL 6.68e-01 0.0291 0.0679 0.246 B L1
ENSG00000162373 BEND5 -717003 sc-eQTL 1.50e-01 -0.0813 0.0562 0.246 B L1
ENSG00000132122 SPATA6 -412242 sc-eQTL 8.91e-01 -0.0135 0.098 0.246 CD4T L1
ENSG00000162368 CMPK1 726169 sc-eQTL 6.31e-01 0.0315 0.0654 0.246 CD4T L1
ENSG00000162373 BEND5 -717003 sc-eQTL 6.85e-01 -0.0353 0.087 0.246 CD4T L1
ENSG00000162368 CMPK1 726169 sc-eQTL 3.27e-01 0.059 0.0601 0.246 CD8T L1
ENSG00000162373 BEND5 -717003 sc-eQTL 7.88e-01 -0.0151 0.0563 0.246 CD8T L1
ENSG00000123473 STIL 745819 sc-eQTL 1.25e-01 -0.143 0.0928 0.239 DC L1
ENSG00000132122 SPATA6 -412242 sc-eQTL 3.56e-01 0.0966 0.104 0.239 DC L1
ENSG00000162366 PDZK1IP1 868922 sc-eQTL 7.58e-01 -0.0274 0.0886 0.239 DC L1
ENSG00000162368 CMPK1 726169 sc-eQTL 4.16e-01 -0.0712 0.0873 0.239 DC L1
ENSG00000162373 BEND5 -717003 sc-eQTL 4.68e-01 0.0644 0.0885 0.239 DC L1
ENSG00000132122 SPATA6 -412242 sc-eQTL 1.32e-02 -0.181 0.0726 0.246 Mono L1
ENSG00000162368 CMPK1 726169 sc-eQTL 2.29e-01 0.0879 0.0728 0.246 Mono L1
ENSG00000162368 CMPK1 726169 sc-eQTL 2.75e-01 0.0657 0.06 0.242 NK L1
ENSG00000123473 STIL 745819 sc-eQTL 5.81e-01 0.0294 0.0532 0.246 Other_T L1
ENSG00000162368 CMPK1 726169 sc-eQTL 2.69e-01 0.0931 0.084 0.246 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -412242 sc-eQTL 1.80e-01 -0.122 0.0906 0.253 B_Activated L2
ENSG00000162368 CMPK1 726169 sc-eQTL 2.82e-01 0.117 0.109 0.253 B_Activated L2
ENSG00000162373 BEND5 -717003 sc-eQTL 3.42e-01 0.104 0.109 0.253 B_Activated L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 9.13e-01 -0.0108 0.0979 0.247 B_Intermediate L2
ENSG00000162368 CMPK1 726169 sc-eQTL 3.48e-01 0.0774 0.0823 0.247 B_Intermediate L2
ENSG00000162373 BEND5 -717003 sc-eQTL 8.38e-01 -0.0182 0.089 0.247 B_Intermediate L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 7.95e-01 -0.0232 0.089 0.248 B_Memory L2
ENSG00000162368 CMPK1 726169 sc-eQTL 7.02e-01 0.0334 0.0872 0.248 B_Memory L2
ENSG00000162373 BEND5 -717003 sc-eQTL 8.41e-01 0.0207 0.103 0.248 B_Memory L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 4.48e-02 0.202 0.1 0.246 B_Naive1 L2
ENSG00000162368 CMPK1 726169 sc-eQTL 4.70e-01 0.0588 0.0812 0.246 B_Naive1 L2
ENSG00000162373 BEND5 -717003 sc-eQTL 9.64e-01 -0.003 0.0671 0.246 B_Naive1 L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 6.34e-01 -0.0502 0.105 0.247 B_Naive2 L2
ENSG00000162368 CMPK1 726169 sc-eQTL 1.81e-01 -0.117 0.087 0.247 B_Naive2 L2
ENSG00000162373 BEND5 -717003 sc-eQTL 1.33e-01 -0.118 0.078 0.247 B_Naive2 L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 9.36e-01 -0.00703 0.0868 0.255 CD4_CTL L2
ENSG00000162368 CMPK1 726169 sc-eQTL 9.80e-02 0.162 0.0975 0.255 CD4_CTL L2
ENSG00000162373 BEND5 -717003 sc-eQTL 8.97e-01 -0.00864 0.0668 0.255 CD4_CTL L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 9.73e-01 0.00337 0.101 0.246 CD4_Naive L2
ENSG00000162368 CMPK1 726169 sc-eQTL 7.39e-01 0.0207 0.0621 0.246 CD4_Naive L2
ENSG00000162373 BEND5 -717003 sc-eQTL 8.00e-01 -0.0247 0.0971 0.246 CD4_Naive L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 9.94e-01 0.000724 0.0997 0.246 CD4_TCM L2
ENSG00000162368 CMPK1 726169 sc-eQTL 6.86e-01 0.028 0.069 0.246 CD4_TCM L2
ENSG00000162373 BEND5 -717003 sc-eQTL 8.01e-01 -0.0259 0.102 0.246 CD4_TCM L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 9.67e-01 -0.00435 0.105 0.246 CD4_TEM L2
ENSG00000162368 CMPK1 726169 sc-eQTL 6.33e-01 -0.0413 0.0863 0.246 CD4_TEM L2
ENSG00000162373 BEND5 -717003 sc-eQTL 7.13e-01 0.0319 0.0867 0.246 CD4_TEM L2
ENSG00000162368 CMPK1 726169 sc-eQTL 6.87e-02 0.145 0.0791 0.246 CD8_CTL L2
ENSG00000162373 BEND5 -717003 sc-eQTL 3.78e-02 0.164 0.0783 0.246 CD8_CTL L2
ENSG00000162368 CMPK1 726169 sc-eQTL 9.63e-01 0.00353 0.0763 0.246 CD8_Naive L2
ENSG00000162373 BEND5 -717003 sc-eQTL 3.89e-01 -0.081 0.0939 0.246 CD8_Naive L2
ENSG00000162368 CMPK1 726169 sc-eQTL 2.61e-01 0.0995 0.0882 0.252 CD8_TCM L2
ENSG00000162373 BEND5 -717003 sc-eQTL 5.91e-01 0.055 0.102 0.252 CD8_TCM L2
ENSG00000162368 CMPK1 726169 sc-eQTL 3.88e-01 0.0832 0.0963 0.247 CD8_TEM L2
ENSG00000162373 BEND5 -717003 sc-eQTL 9.24e-01 -0.00776 0.081 0.247 CD8_TEM L2
ENSG00000123473 STIL 745819 sc-eQTL 1.24e-01 0.129 0.0834 0.247 MAIT L2
ENSG00000162368 CMPK1 726169 sc-eQTL 1.51e-01 0.12 0.0835 0.247 MAIT L2
ENSG00000162368 CMPK1 726169 sc-eQTL 3.71e-01 0.0874 0.0975 0.242 NK_CD56bright L2
ENSG00000162368 CMPK1 726169 sc-eQTL 8.94e-01 -0.00982 0.0734 0.244 NK_CD56dim L2
ENSG00000162368 CMPK1 726169 sc-eQTL 3.36e-01 0.0934 0.0969 0.247 NK_HLA L2
ENSG00000162368 CMPK1 726169 sc-eQTL 4.69e-01 0.0643 0.0887 0.244 NK_cytokine L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 2.71e-01 -0.0936 0.0846 0.248 PB L2
ENSG00000162368 CMPK1 726169 sc-eQTL 4.33e-01 -0.089 0.113 0.248 PB L2
ENSG00000162373 BEND5 -717003 sc-eQTL 5.25e-01 -0.0769 0.121 0.248 PB L2
ENSG00000123473 STIL 745819 sc-eQTL 9.43e-01 0.00469 0.0658 0.246 Pro_T L2
ENSG00000162368 CMPK1 726169 sc-eQTL 6.61e-01 -0.0424 0.0965 0.246 Pro_T L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 3.19e-01 -0.0844 0.0846 0.246 Treg L2
ENSG00000162368 CMPK1 726169 sc-eQTL 9.66e-01 -0.0033 0.0771 0.246 Treg L2
ENSG00000162373 BEND5 -717003 sc-eQTL 4.43e-01 0.0642 0.0835 0.246 Treg L2
ENSG00000123473 STIL 745819 sc-eQTL 2.84e-01 -0.0992 0.0923 0.237 cDC L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 8.30e-01 -0.0235 0.109 0.237 cDC L2
ENSG00000162366 PDZK1IP1 868922 sc-eQTL 9.84e-01 -0.00176 0.0895 0.237 cDC L2
ENSG00000162368 CMPK1 726169 sc-eQTL 4.34e-01 -0.079 0.101 0.237 cDC L2
ENSG00000162373 BEND5 -717003 sc-eQTL 3.00e-01 -0.0919 0.0884 0.237 cDC L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 5.93e-02 -0.167 0.0882 0.246 cMono_IL1B L2
ENSG00000162368 CMPK1 726169 sc-eQTL 5.02e-01 0.0542 0.0806 0.246 cMono_IL1B L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 1.43e-01 -0.141 0.0961 0.246 cMono_S100A L2
ENSG00000162368 CMPK1 726169 sc-eQTL 5.74e-01 0.0522 0.0927 0.246 cMono_S100A L2
ENSG00000123473 STIL 745819 sc-eQTL 5.40e-01 0.0624 0.101 0.261 gdT L2
ENSG00000162368 CMPK1 726169 sc-eQTL 8.97e-01 -0.0153 0.118 0.261 gdT L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 3.12e-03 -0.297 0.0993 0.24 intMono L2
ENSG00000162368 CMPK1 726169 sc-eQTL 3.43e-01 0.095 0.1 0.24 intMono L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 9.58e-01 -0.00437 0.0823 0.238 ncMono L2
ENSG00000162368 CMPK1 726169 sc-eQTL 4.19e-01 0.0775 0.0958 0.238 ncMono L2
ENSG00000123473 STIL 745819 sc-eQTL 1.90e-01 -0.123 0.0937 0.243 pDC L2
ENSG00000132122 SPATA6 -412242 sc-eQTL 3.86e-01 0.0926 0.107 0.243 pDC L2
ENSG00000162366 PDZK1IP1 868922 sc-eQTL 2.73e-01 -0.095 0.0863 0.243 pDC L2
ENSG00000162368 CMPK1 726169 sc-eQTL 9.83e-01 0.00219 0.103 0.243 pDC L2
ENSG00000162373 BEND5 -717003 sc-eQTL 1.72e-01 0.139 0.101 0.243 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -412242 sc-eQTL 6.55e-01 -0.045 0.101 0.246 B_Memory LOneK1K
ENSG00000162368 CMPK1 726169 sc-eQTL 3.01e-01 0.0833 0.0804 0.246 B_Memory LOneK1K
ENSG00000162373 BEND5 -717003 sc-eQTL 5.81e-01 -0.0467 0.0844 0.246 B_Memory LOneK1K
ENSG00000132122 SPATA6 -412242 sc-eQTL 3.14e-01 0.104 0.103 0.246 B_Naive LOneK1K
ENSG00000162368 CMPK1 726169 sc-eQTL 8.68e-01 0.0134 0.0803 0.246 B_Naive LOneK1K
ENSG00000162373 BEND5 -717003 sc-eQTL 4.18e-01 -0.048 0.0592 0.246 B_Naive LOneK1K
ENSG00000132122 SPATA6 -412242 sc-eQTL 2.44e-02 -0.191 0.0844 0.246 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 726169 sc-eQTL 4.05e-01 0.0616 0.0739 0.246 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -412242 sc-eQTL 2.03e-01 -0.0949 0.0743 0.241 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 726169 sc-eQTL 3.37e-01 0.0836 0.0869 0.241 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 726169 sc-eQTL 6.78e-01 0.0256 0.0615 0.244 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000235105 \N -376001 9.39e-07 6.07e-07 1.23e-07 4.43e-07 1.07e-07 2.63e-07 5.82e-07 1.65e-07 5.06e-07 2.72e-07 7.44e-07 3.91e-07 9.1e-07 1.52e-07 2.57e-07 2.89e-07 3.75e-07 4.24e-07 2.65e-07 1.97e-07 2.38e-07 4.14e-07 3.84e-07 2.24e-07 8.62e-07 2.71e-07 3.48e-07 2.98e-07 4.63e-07 6.19e-07 3.32e-07 5.77e-08 5.3e-08 1.69e-07 3.66e-07 1.8e-07 1.1e-07 1.21e-07 7.54e-08 8.22e-09 1.47e-07 6.15e-07 4.47e-08 1.52e-08 1.96e-07 2.71e-08 1.26e-07 3.01e-08 6.46e-08