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Genes within 1Mb (chr1:48003249:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -468959 sc-eQTL 3.55e-01 -0.119 0.128 0.12 B L1
ENSG00000162368 CMPK1 669452 sc-eQTL 7.88e-01 0.024 0.0891 0.12 B L1
ENSG00000162373 BEND5 -773720 sc-eQTL 2.03e-01 0.0944 0.0739 0.12 B L1
ENSG00000132122 SPATA6 -468959 sc-eQTL 8.28e-01 0.0278 0.127 0.12 CD4T L1
ENSG00000162368 CMPK1 669452 sc-eQTL 7.88e-01 -0.023 0.0851 0.12 CD4T L1
ENSG00000162373 BEND5 -773720 sc-eQTL 7.76e-01 -0.0322 0.113 0.12 CD4T L1
ENSG00000162368 CMPK1 669452 sc-eQTL 5.50e-01 0.0471 0.0787 0.12 CD8T L1
ENSG00000162373 BEND5 -773720 sc-eQTL 3.88e-01 -0.0637 0.0735 0.12 CD8T L1
ENSG00000123473 STIL 689102 sc-eQTL 9.41e-01 -0.00869 0.117 0.124 DC L1
ENSG00000132122 SPATA6 -468959 sc-eQTL 4.15e-01 0.107 0.13 0.124 DC L1
ENSG00000162366 PDZK1IP1 812205 sc-eQTL 3.37e-01 -0.106 0.11 0.124 DC L1
ENSG00000162368 CMPK1 669452 sc-eQTL 6.01e-01 -0.0572 0.109 0.124 DC L1
ENSG00000162373 BEND5 -773720 sc-eQTL 8.61e-01 -0.0194 0.111 0.124 DC L1
ENSG00000132122 SPATA6 -468959 sc-eQTL 6.44e-01 -0.0439 0.095 0.12 Mono L1
ENSG00000162368 CMPK1 669452 sc-eQTL 8.81e-01 0.0141 0.0943 0.12 Mono L1
ENSG00000162368 CMPK1 669452 sc-eQTL 3.55e-01 -0.0732 0.079 0.12 NK L1
ENSG00000123473 STIL 689102 sc-eQTL 6.55e-02 0.126 0.0683 0.12 Other_T L1
ENSG00000162368 CMPK1 669452 sc-eQTL 7.45e-01 0.0355 0.109 0.12 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -468959 sc-eQTL 2.51e-01 -0.136 0.118 0.122 B_Activated L2
ENSG00000162368 CMPK1 669452 sc-eQTL 2.33e-01 0.168 0.141 0.122 B_Activated L2
ENSG00000162373 BEND5 -773720 sc-eQTL 6.62e-01 -0.0622 0.142 0.122 B_Activated L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 1.38e-01 -0.193 0.13 0.12 B_Intermediate L2
ENSG00000162368 CMPK1 669452 sc-eQTL 7.23e-01 -0.0389 0.11 0.12 B_Intermediate L2
ENSG00000162373 BEND5 -773720 sc-eQTL 7.25e-02 0.212 0.117 0.12 B_Intermediate L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 2.98e-01 -0.123 0.118 0.121 B_Memory L2
ENSG00000162368 CMPK1 669452 sc-eQTL 7.61e-01 -0.0353 0.116 0.121 B_Memory L2
ENSG00000162373 BEND5 -773720 sc-eQTL 1.95e-01 0.177 0.136 0.121 B_Memory L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 8.78e-01 0.0205 0.133 0.12 B_Naive1 L2
ENSG00000162368 CMPK1 669452 sc-eQTL 9.64e-01 -0.00491 0.107 0.12 B_Naive1 L2
ENSG00000162373 BEND5 -773720 sc-eQTL 9.83e-01 -0.00191 0.0885 0.12 B_Naive1 L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 5.11e-01 -0.0899 0.136 0.12 B_Naive2 L2
ENSG00000162368 CMPK1 669452 sc-eQTL 2.83e-01 -0.121 0.113 0.12 B_Naive2 L2
ENSG00000162373 BEND5 -773720 sc-eQTL 4.92e-01 0.0698 0.101 0.12 B_Naive2 L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 6.95e-01 0.047 0.12 0.123 CD4_CTL L2
ENSG00000162368 CMPK1 669452 sc-eQTL 3.88e-01 0.117 0.135 0.123 CD4_CTL L2
ENSG00000162373 BEND5 -773720 sc-eQTL 6.64e-01 0.0402 0.0924 0.123 CD4_CTL L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 7.38e-01 0.044 0.132 0.12 CD4_Naive L2
ENSG00000162368 CMPK1 669452 sc-eQTL 9.87e-01 0.00129 0.0808 0.12 CD4_Naive L2
ENSG00000162373 BEND5 -773720 sc-eQTL 7.70e-01 -0.0371 0.126 0.12 CD4_Naive L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 6.08e-01 0.0669 0.13 0.12 CD4_TCM L2
ENSG00000162368 CMPK1 669452 sc-eQTL 4.35e-01 -0.0704 0.09 0.12 CD4_TCM L2
ENSG00000162373 BEND5 -773720 sc-eQTL 1.38e-01 0.198 0.133 0.12 CD4_TCM L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 1.01e-02 -0.355 0.137 0.12 CD4_TEM L2
ENSG00000162368 CMPK1 669452 sc-eQTL 2.21e-01 -0.141 0.114 0.12 CD4_TEM L2
ENSG00000162373 BEND5 -773720 sc-eQTL 4.83e-01 0.081 0.115 0.12 CD4_TEM L2
ENSG00000162368 CMPK1 669452 sc-eQTL 7.39e-01 -0.0352 0.105 0.12 CD8_CTL L2
ENSG00000162373 BEND5 -773720 sc-eQTL 8.53e-01 0.0194 0.104 0.12 CD8_CTL L2
ENSG00000162368 CMPK1 669452 sc-eQTL 9.68e-01 0.00406 0.101 0.12 CD8_Naive L2
ENSG00000162373 BEND5 -773720 sc-eQTL 5.08e-01 -0.0823 0.124 0.12 CD8_Naive L2
ENSG00000162368 CMPK1 669452 sc-eQTL 3.85e-01 -0.0985 0.113 0.123 CD8_TCM L2
ENSG00000162373 BEND5 -773720 sc-eQTL 6.30e-01 -0.0631 0.131 0.123 CD8_TCM L2
ENSG00000162368 CMPK1 669452 sc-eQTL 7.03e-01 -0.0517 0.135 0.116 CD8_TEM L2
ENSG00000162373 BEND5 -773720 sc-eQTL 7.62e-01 -0.0345 0.114 0.116 CD8_TEM L2
ENSG00000123473 STIL 689102 sc-eQTL 1.26e-01 0.171 0.111 0.121 MAIT L2
ENSG00000162368 CMPK1 669452 sc-eQTL 8.60e-01 -0.0198 0.112 0.121 MAIT L2
ENSG00000162368 CMPK1 669452 sc-eQTL 5.70e-01 -0.0728 0.128 0.122 NK_CD56bright L2
ENSG00000162368 CMPK1 669452 sc-eQTL 2.21e-01 -0.118 0.0963 0.121 NK_CD56dim L2
ENSG00000162368 CMPK1 669452 sc-eQTL 4.08e-01 -0.111 0.134 0.121 NK_HLA L2
ENSG00000162368 CMPK1 669452 sc-eQTL 3.54e-01 -0.108 0.116 0.121 NK_cytokine L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 7.70e-01 0.0349 0.119 0.104 PB L2
ENSG00000162368 CMPK1 669452 sc-eQTL 2.04e-01 -0.202 0.158 0.104 PB L2
ENSG00000162373 BEND5 -773720 sc-eQTL 1.99e-01 -0.217 0.168 0.104 PB L2
ENSG00000123473 STIL 689102 sc-eQTL 2.81e-01 0.0931 0.0861 0.12 Pro_T L2
ENSG00000162368 CMPK1 669452 sc-eQTL 2.76e-02 0.278 0.125 0.12 Pro_T L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 8.26e-01 -0.025 0.113 0.12 Treg L2
ENSG00000162368 CMPK1 669452 sc-eQTL 4.36e-01 -0.0802 0.103 0.12 Treg L2
ENSG00000162373 BEND5 -773720 sc-eQTL 8.88e-01 -0.0158 0.112 0.12 Treg L2
ENSG00000123473 STIL 689102 sc-eQTL 6.33e-01 0.0543 0.114 0.124 cDC L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 5.80e-01 0.0744 0.134 0.124 cDC L2
ENSG00000162366 PDZK1IP1 812205 sc-eQTL 5.29e-01 -0.0692 0.11 0.124 cDC L2
ENSG00000162368 CMPK1 669452 sc-eQTL 3.33e-01 -0.12 0.123 0.124 cDC L2
ENSG00000162373 BEND5 -773720 sc-eQTL 7.83e-01 0.03 0.109 0.124 cDC L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 6.01e-01 -0.0602 0.115 0.12 cMono_IL1B L2
ENSG00000162368 CMPK1 669452 sc-eQTL 4.33e-01 0.0818 0.104 0.12 cMono_IL1B L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 8.17e-01 0.029 0.125 0.12 cMono_S100A L2
ENSG00000162368 CMPK1 669452 sc-eQTL 1.47e-01 -0.174 0.12 0.12 cMono_S100A L2
ENSG00000123473 STIL 689102 sc-eQTL 3.41e-01 0.122 0.127 0.136 gdT L2
ENSG00000162368 CMPK1 669452 sc-eQTL 3.68e-01 0.134 0.148 0.136 gdT L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 9.32e-01 0.0114 0.134 0.12 intMono L2
ENSG00000162368 CMPK1 669452 sc-eQTL 9.85e-01 0.00242 0.132 0.12 intMono L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 6.98e-01 -0.0421 0.108 0.122 ncMono L2
ENSG00000162368 CMPK1 669452 sc-eQTL 8.72e-01 -0.0203 0.126 0.122 ncMono L2
ENSG00000123473 STIL 689102 sc-eQTL 8.58e-01 -0.0223 0.124 0.124 pDC L2
ENSG00000132122 SPATA6 -468959 sc-eQTL 2.90e-01 0.149 0.141 0.124 pDC L2
ENSG00000162366 PDZK1IP1 812205 sc-eQTL 2.95e-01 -0.12 0.114 0.124 pDC L2
ENSG00000162368 CMPK1 669452 sc-eQTL 4.03e-01 -0.114 0.136 0.124 pDC L2
ENSG00000162373 BEND5 -773720 sc-eQTL 9.59e-01 0.00687 0.134 0.124 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -468959 sc-eQTL 1.54e-01 -0.187 0.131 0.12 B_Memory LOneK1K
ENSG00000162368 CMPK1 669452 sc-eQTL 7.87e-01 -0.0284 0.105 0.12 B_Memory LOneK1K
ENSG00000162373 BEND5 -773720 sc-eQTL 1.60e-02 0.264 0.109 0.12 B_Memory LOneK1K
ENSG00000132122 SPATA6 -468959 sc-eQTL 9.81e-01 0.00322 0.135 0.12 B_Naive LOneK1K
ENSG00000162368 CMPK1 669452 sc-eQTL 9.31e-01 -0.00912 0.106 0.12 B_Naive LOneK1K
ENSG00000162373 BEND5 -773720 sc-eQTL 5.34e-01 0.0485 0.0779 0.12 B_Naive LOneK1K
ENSG00000132122 SPATA6 -468959 sc-eQTL 6.55e-01 -0.0494 0.11 0.12 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 669452 sc-eQTL 9.25e-01 -0.00901 0.0955 0.12 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -468959 sc-eQTL 9.59e-01 0.00497 0.0969 0.121 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 669452 sc-eQTL 9.49e-01 0.00731 0.113 0.121 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 669452 sc-eQTL 2.13e-01 -0.101 0.0808 0.121 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000186564 FOXD2 567232 eQTL 4.19e-02 0.0854 0.0419 0.0 0.0 0.0957
ENSG00000237424 FOXD2-AS1 568608 eQTL 0.148 0.0608 0.042 0.0012 0.0 0.0957

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina