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Genes within 1Mb (chr1:47945268:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -526940 sc-eQTL 5.25e-01 -0.0576 0.0905 0.261 B L1
ENSG00000162368 CMPK1 611471 sc-eQTL 5.94e-01 -0.0335 0.0627 0.261 B L1
ENSG00000162373 BEND5 -831701 sc-eQTL 7.29e-01 0.0181 0.0523 0.261 B L1
ENSG00000132122 SPATA6 -526940 sc-eQTL 3.18e-01 0.0905 0.0903 0.261 CD4T L1
ENSG00000162368 CMPK1 611471 sc-eQTL 6.28e-01 -0.0293 0.0604 0.261 CD4T L1
ENSG00000162373 BEND5 -831701 sc-eQTL 7.32e-01 -0.0276 0.0804 0.261 CD4T L1
ENSG00000162368 CMPK1 611471 sc-eQTL 4.72e-01 -0.04 0.0556 0.261 CD8T L1
ENSG00000162373 BEND5 -831701 sc-eQTL 8.67e-01 -0.00869 0.052 0.261 CD8T L1
ENSG00000123473 STIL 631121 sc-eQTL 6.63e-01 -0.0367 0.0841 0.268 DC L1
ENSG00000132122 SPATA6 -526940 sc-eQTL 9.16e-01 -0.00999 0.0943 0.268 DC L1
ENSG00000162366 PDZK1IP1 754224 sc-eQTL 8.11e-01 -0.0192 0.0798 0.268 DC L1
ENSG00000162368 CMPK1 611471 sc-eQTL 4.68e-01 -0.0573 0.0787 0.268 DC L1
ENSG00000162373 BEND5 -831701 sc-eQTL 6.21e-01 -0.0395 0.0799 0.268 DC L1
ENSG00000132122 SPATA6 -526940 sc-eQTL 6.60e-01 0.0297 0.0673 0.261 Mono L1
ENSG00000162368 CMPK1 611471 sc-eQTL 7.48e-01 0.0215 0.0668 0.261 Mono L1
ENSG00000162368 CMPK1 611471 sc-eQTL 1.69e-01 -0.0773 0.056 0.26 NK L1
ENSG00000123473 STIL 631121 sc-eQTL 1.47e-01 0.0712 0.0488 0.261 Other_T L1
ENSG00000162368 CMPK1 611471 sc-eQTL 8.25e-01 0.0172 0.0777 0.261 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -526940 sc-eQTL 5.97e-01 0.0456 0.0861 0.26 B_Activated L2
ENSG00000162368 CMPK1 611471 sc-eQTL 4.92e-01 0.0709 0.103 0.26 B_Activated L2
ENSG00000162373 BEND5 -831701 sc-eQTL 4.91e-01 0.0714 0.103 0.26 B_Activated L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 2.34e-01 -0.11 0.0919 0.262 B_Intermediate L2
ENSG00000162368 CMPK1 611471 sc-eQTL 2.14e-01 -0.0964 0.0774 0.262 B_Intermediate L2
ENSG00000162373 BEND5 -831701 sc-eQTL 3.00e-01 0.087 0.0837 0.262 B_Intermediate L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 5.21e-01 0.0545 0.0848 0.263 B_Memory L2
ENSG00000162368 CMPK1 611471 sc-eQTL 5.07e-01 0.0553 0.0831 0.263 B_Memory L2
ENSG00000162373 BEND5 -831701 sc-eQTL 8.99e-01 0.0125 0.0982 0.263 B_Memory L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 9.03e-01 -0.0113 0.0931 0.261 B_Naive1 L2
ENSG00000162368 CMPK1 611471 sc-eQTL 1.97e-01 -0.0966 0.0746 0.261 B_Naive1 L2
ENSG00000162373 BEND5 -831701 sc-eQTL 9.16e-01 -0.00656 0.0618 0.261 B_Naive1 L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 5.93e-01 0.0515 0.0962 0.262 B_Naive2 L2
ENSG00000162368 CMPK1 611471 sc-eQTL 9.59e-01 -0.00415 0.0797 0.262 B_Naive2 L2
ENSG00000162373 BEND5 -831701 sc-eQTL 7.00e-01 0.0276 0.0715 0.262 B_Naive2 L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 9.75e-01 -0.00257 0.0835 0.264 CD4_CTL L2
ENSG00000162368 CMPK1 611471 sc-eQTL 4.74e-01 0.0678 0.0944 0.264 CD4_CTL L2
ENSG00000162373 BEND5 -831701 sc-eQTL 2.64e-01 0.0719 0.0641 0.264 CD4_CTL L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 1.38e-01 0.139 0.0936 0.261 CD4_Naive L2
ENSG00000162368 CMPK1 611471 sc-eQTL 7.43e-01 -0.019 0.0578 0.261 CD4_Naive L2
ENSG00000162373 BEND5 -831701 sc-eQTL 6.43e-01 -0.042 0.0904 0.261 CD4_Naive L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 2.84e-01 0.0992 0.0923 0.261 CD4_TCM L2
ENSG00000162368 CMPK1 611471 sc-eQTL 7.90e-01 -0.0171 0.0641 0.261 CD4_TCM L2
ENSG00000162373 BEND5 -831701 sc-eQTL 6.75e-01 -0.0398 0.0949 0.261 CD4_TCM L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 3.08e-02 -0.21 0.0965 0.261 CD4_TEM L2
ENSG00000162368 CMPK1 611471 sc-eQTL 7.22e-01 -0.0287 0.0806 0.261 CD4_TEM L2
ENSG00000162373 BEND5 -831701 sc-eQTL 8.75e-01 -0.0128 0.0809 0.261 CD4_TEM L2
ENSG00000162368 CMPK1 611471 sc-eQTL 8.70e-01 -0.0122 0.0742 0.261 CD8_CTL L2
ENSG00000162373 BEND5 -831701 sc-eQTL 2.70e-01 -0.0812 0.0734 0.261 CD8_CTL L2
ENSG00000162368 CMPK1 611471 sc-eQTL 8.95e-01 -0.00937 0.0708 0.261 CD8_Naive L2
ENSG00000162373 BEND5 -831701 sc-eQTL 9.20e-01 -0.00874 0.0873 0.261 CD8_Naive L2
ENSG00000162368 CMPK1 611471 sc-eQTL 1.87e-01 -0.107 0.0808 0.264 CD8_TCM L2
ENSG00000162373 BEND5 -831701 sc-eQTL 9.47e-01 -0.00622 0.0937 0.264 CD8_TCM L2
ENSG00000162368 CMPK1 611471 sc-eQTL 5.84e-01 -0.0516 0.094 0.253 CD8_TEM L2
ENSG00000162373 BEND5 -831701 sc-eQTL 8.04e-01 -0.0196 0.079 0.253 CD8_TEM L2
ENSG00000123473 STIL 631121 sc-eQTL 6.85e-01 0.0319 0.0784 0.262 MAIT L2
ENSG00000162368 CMPK1 611471 sc-eQTL 7.28e-01 0.0273 0.0784 0.262 MAIT L2
ENSG00000162368 CMPK1 611471 sc-eQTL 2.42e-01 0.107 0.0915 0.262 NK_CD56bright L2
ENSG00000162368 CMPK1 611471 sc-eQTL 1.64e-02 -0.164 0.0679 0.261 NK_CD56dim L2
ENSG00000162368 CMPK1 611471 sc-eQTL 8.96e-01 -0.0122 0.0931 0.256 NK_HLA L2
ENSG00000162368 CMPK1 611471 sc-eQTL 3.76e-01 -0.0741 0.0835 0.261 NK_cytokine L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 6.86e-01 -0.0338 0.0835 0.244 PB L2
ENSG00000162368 CMPK1 611471 sc-eQTL 1.32e-01 0.167 0.11 0.244 PB L2
ENSG00000162373 BEND5 -831701 sc-eQTL 5.37e-01 -0.0735 0.119 0.244 PB L2
ENSG00000123473 STIL 631121 sc-eQTL 8.93e-03 0.162 0.0613 0.259 Pro_T L2
ENSG00000162368 CMPK1 611471 sc-eQTL 4.91e-03 0.255 0.0896 0.259 Pro_T L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 7.79e-02 0.139 0.0782 0.261 Treg L2
ENSG00000162368 CMPK1 611471 sc-eQTL 4.31e-01 -0.0564 0.0715 0.261 Treg L2
ENSG00000162373 BEND5 -831701 sc-eQTL 3.64e-01 0.0705 0.0775 0.261 Treg L2
ENSG00000123473 STIL 631121 sc-eQTL 3.65e-01 -0.0753 0.0829 0.276 cDC L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 7.73e-01 0.0284 0.0981 0.276 cDC L2
ENSG00000162366 PDZK1IP1 754224 sc-eQTL 8.59e-01 -0.0143 0.0803 0.276 cDC L2
ENSG00000162368 CMPK1 611471 sc-eQTL 9.93e-01 0.000829 0.0905 0.276 cDC L2
ENSG00000162373 BEND5 -831701 sc-eQTL 6.14e-01 0.0402 0.0795 0.276 cDC L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 8.71e-01 -0.0133 0.0818 0.261 cMono_IL1B L2
ENSG00000162368 CMPK1 611471 sc-eQTL 8.46e-01 0.0144 0.0742 0.261 cMono_IL1B L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 5.83e-01 0.0487 0.0885 0.261 cMono_S100A L2
ENSG00000162368 CMPK1 611471 sc-eQTL 2.36e-01 0.101 0.0849 0.261 cMono_S100A L2
ENSG00000123473 STIL 631121 sc-eQTL 5.06e-01 0.0609 0.0914 0.264 gdT L2
ENSG00000162368 CMPK1 611471 sc-eQTL 5.47e-01 0.0643 0.106 0.264 gdT L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 6.14e-01 -0.047 0.0929 0.264 intMono L2
ENSG00000162368 CMPK1 611471 sc-eQTL 9.63e-01 0.00424 0.0918 0.264 intMono L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 4.19e-01 0.0609 0.0752 0.265 ncMono L2
ENSG00000162368 CMPK1 611471 sc-eQTL 3.32e-02 -0.186 0.0868 0.265 ncMono L2
ENSG00000123473 STIL 631121 sc-eQTL 8.96e-01 -0.0121 0.0925 0.266 pDC L2
ENSG00000132122 SPATA6 -526940 sc-eQTL 8.07e-01 0.0257 0.105 0.266 pDC L2
ENSG00000162366 PDZK1IP1 754224 sc-eQTL 9.01e-01 0.0106 0.0851 0.266 pDC L2
ENSG00000162368 CMPK1 611471 sc-eQTL 2.29e-01 -0.122 0.101 0.266 pDC L2
ENSG00000162373 BEND5 -831701 sc-eQTL 2.80e-01 -0.108 0.0993 0.266 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -526940 sc-eQTL 6.08e-01 -0.0476 0.0926 0.261 B_Memory LOneK1K
ENSG00000162368 CMPK1 611471 sc-eQTL 6.50e-01 -0.0337 0.0742 0.261 B_Memory LOneK1K
ENSG00000162373 BEND5 -831701 sc-eQTL 2.05e-01 0.0985 0.0775 0.261 B_Memory LOneK1K
ENSG00000132122 SPATA6 -526940 sc-eQTL 8.89e-01 0.0131 0.0943 0.261 B_Naive LOneK1K
ENSG00000162368 CMPK1 611471 sc-eQTL 4.99e-01 -0.0498 0.0736 0.261 B_Naive LOneK1K
ENSG00000162373 BEND5 -831701 sc-eQTL 6.95e-01 0.0213 0.0543 0.261 B_Naive LOneK1K
ENSG00000132122 SPATA6 -526940 sc-eQTL 9.05e-01 0.00936 0.0783 0.261 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 611471 sc-eQTL 6.24e-01 0.0333 0.0678 0.261 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -526940 sc-eQTL 2.94e-01 0.0716 0.068 0.261 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 611471 sc-eQTL 2.83e-01 -0.0854 0.0794 0.261 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 611471 sc-eQTL 2.91e-02 -0.125 0.0571 0.261 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000186564 FOXD2 509251 eQTL 2.04e-02 0.0652 0.0281 0.00108 0.0 0.254

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000186564 FOXD2 509251 3.53e-07 1.56e-07 6.15e-08 2.24e-07 9.82e-08 8.37e-08 2.24e-07 5.75e-08 1.54e-07 8.53e-08 1.83e-07 1.46e-07 2.38e-07 8.44e-08 5.43e-08 8.08e-08 4.45e-08 1.72e-07 7.36e-08 5.07e-08 1.22e-07 1.42e-07 1.62e-07 3.42e-08 2.17e-07 1.22e-07 1.19e-07 1.1e-07 1.31e-07 1.59e-07 1.22e-07 3.72e-08 3.56e-08 9.58e-08 3.36e-08 2.85e-08 4.62e-08 8.57e-08 6.39e-08 5.13e-08 5.59e-08 1.59e-07 3.18e-08 1.08e-08 3.71e-08 1.01e-08 9.29e-08 2.13e-09 4.81e-08