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Genes within 1Mb (chr1:47943542:A:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -528666 sc-eQTL 4.84e-01 0.0608 0.0867 0.607 B L1
ENSG00000162368 CMPK1 609745 sc-eQTL 8.49e-01 0.0115 0.0602 0.607 B L1
ENSG00000162373 BEND5 -833427 sc-eQTL 8.53e-01 0.00932 0.0501 0.607 B L1
ENSG00000132122 SPATA6 -528666 sc-eQTL 4.46e-01 0.0657 0.086 0.607 CD4T L1
ENSG00000162368 CMPK1 609745 sc-eQTL 7.39e-01 0.0192 0.0575 0.607 CD4T L1
ENSG00000162373 BEND5 -833427 sc-eQTL 9.55e-01 -0.00436 0.0765 0.607 CD4T L1
ENSG00000162368 CMPK1 609745 sc-eQTL 9.17e-01 -0.00554 0.0531 0.607 CD8T L1
ENSG00000162373 BEND5 -833427 sc-eQTL 7.79e-01 0.014 0.0497 0.607 CD8T L1
ENSG00000123473 STIL 629395 sc-eQTL 3.63e-01 -0.0729 0.0799 0.601 DC L1
ENSG00000132122 SPATA6 -528666 sc-eQTL 9.40e-01 0.00671 0.0896 0.601 DC L1
ENSG00000162366 PDZK1IP1 752498 sc-eQTL 2.71e-01 -0.0836 0.0757 0.601 DC L1
ENSG00000162368 CMPK1 609745 sc-eQTL 7.45e-01 -0.0243 0.0749 0.601 DC L1
ENSG00000162373 BEND5 -833427 sc-eQTL 1.77e-01 -0.102 0.0756 0.601 DC L1
ENSG00000132122 SPATA6 -528666 sc-eQTL 7.33e-01 0.0221 0.0649 0.607 Mono L1
ENSG00000162368 CMPK1 609745 sc-eQTL 3.34e-01 0.0622 0.0642 0.607 Mono L1
ENSG00000162368 CMPK1 609745 sc-eQTL 4.29e-01 -0.0427 0.0539 0.605 NK L1
ENSG00000123473 STIL 629395 sc-eQTL 1.81e-01 0.0625 0.0466 0.607 Other_T L1
ENSG00000162368 CMPK1 609745 sc-eQTL 5.72e-01 -0.0419 0.074 0.607 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -528666 sc-eQTL 5.45e-01 -0.0486 0.08 0.617 B_Activated L2
ENSG00000162368 CMPK1 609745 sc-eQTL 8.41e-01 0.0193 0.0959 0.617 B_Activated L2
ENSG00000162373 BEND5 -833427 sc-eQTL 2.24e-01 0.117 0.0958 0.617 B_Activated L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 8.42e-01 -0.0176 0.0882 0.605 B_Intermediate L2
ENSG00000162368 CMPK1 609745 sc-eQTL 6.71e-01 0.0316 0.0742 0.605 B_Intermediate L2
ENSG00000162373 BEND5 -833427 sc-eQTL 7.44e-01 0.0262 0.0801 0.605 B_Intermediate L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 2.54e-01 -0.0908 0.0793 0.606 B_Memory L2
ENSG00000162368 CMPK1 609745 sc-eQTL 4.78e-01 0.0554 0.0779 0.606 B_Memory L2
ENSG00000162373 BEND5 -833427 sc-eQTL 5.68e-01 -0.0525 0.092 0.606 B_Memory L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 2.50e-01 0.103 0.0896 0.607 B_Naive1 L2
ENSG00000162368 CMPK1 609745 sc-eQTL 6.18e-01 -0.0361 0.0723 0.607 B_Naive1 L2
ENSG00000162373 BEND5 -833427 sc-eQTL 9.62e-01 -0.00283 0.0597 0.607 B_Naive1 L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 3.83e-01 0.0801 0.0917 0.607 B_Naive2 L2
ENSG00000162368 CMPK1 609745 sc-eQTL 7.09e-01 -0.0284 0.0761 0.607 B_Naive2 L2
ENSG00000162373 BEND5 -833427 sc-eQTL 3.53e-01 -0.0634 0.0682 0.607 B_Naive2 L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 5.39e-01 -0.0481 0.0782 0.609 CD4_CTL L2
ENSG00000162368 CMPK1 609745 sc-eQTL 4.84e-01 0.0621 0.0884 0.609 CD4_CTL L2
ENSG00000162373 BEND5 -833427 sc-eQTL 6.19e-01 -0.03 0.0602 0.609 CD4_CTL L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 5.65e-01 0.0515 0.0894 0.607 CD4_Naive L2
ENSG00000162368 CMPK1 609745 sc-eQTL 6.49e-01 0.0251 0.055 0.607 CD4_Naive L2
ENSG00000162373 BEND5 -833427 sc-eQTL 8.08e-01 -0.021 0.086 0.607 CD4_Naive L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 3.46e-01 0.0829 0.0877 0.607 CD4_TCM L2
ENSG00000162368 CMPK1 609745 sc-eQTL 5.89e-01 -0.033 0.0608 0.607 CD4_TCM L2
ENSG00000162373 BEND5 -833427 sc-eQTL 3.20e-01 0.0897 0.09 0.607 CD4_TCM L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 8.83e-01 -0.0138 0.0932 0.607 CD4_TEM L2
ENSG00000162368 CMPK1 609745 sc-eQTL 9.06e-01 -0.00907 0.077 0.607 CD4_TEM L2
ENSG00000162373 BEND5 -833427 sc-eQTL 3.84e-01 0.0674 0.0772 0.607 CD4_TEM L2
ENSG00000162368 CMPK1 609745 sc-eQTL 4.84e-01 -0.0495 0.0706 0.607 CD8_CTL L2
ENSG00000162373 BEND5 -833427 sc-eQTL 2.39e-01 -0.0824 0.0699 0.607 CD8_CTL L2
ENSG00000162368 CMPK1 609745 sc-eQTL 6.60e-01 0.0297 0.0673 0.607 CD8_Naive L2
ENSG00000162373 BEND5 -833427 sc-eQTL 2.43e-01 0.097 0.0828 0.607 CD8_Naive L2
ENSG00000162368 CMPK1 609745 sc-eQTL 2.10e-01 -0.0984 0.0783 0.606 CD8_TCM L2
ENSG00000162373 BEND5 -833427 sc-eQTL 5.74e-01 0.0511 0.0906 0.606 CD8_TCM L2
ENSG00000162368 CMPK1 609745 sc-eQTL 9.51e-01 -0.00538 0.0878 0.6 CD8_TEM L2
ENSG00000162373 BEND5 -833427 sc-eQTL 6.63e-01 -0.0321 0.0737 0.6 CD8_TEM L2
ENSG00000123473 STIL 629395 sc-eQTL 6.24e-01 0.0363 0.0738 0.606 MAIT L2
ENSG00000162368 CMPK1 609745 sc-eQTL 8.62e-01 -0.0128 0.0739 0.606 MAIT L2
ENSG00000162368 CMPK1 609745 sc-eQTL 8.49e-01 0.0172 0.0906 0.609 NK_CD56bright L2
ENSG00000162368 CMPK1 609745 sc-eQTL 1.25e-01 -0.101 0.0659 0.608 NK_CD56dim L2
ENSG00000162368 CMPK1 609745 sc-eQTL 8.69e-01 0.0144 0.0873 0.612 NK_HLA L2
ENSG00000162368 CMPK1 609745 sc-eQTL 5.34e-01 -0.05 0.0802 0.608 NK_cytokine L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 9.80e-01 0.00196 0.0764 0.637 PB L2
ENSG00000162368 CMPK1 609745 sc-eQTL 7.25e-01 -0.0359 0.102 0.637 PB L2
ENSG00000162373 BEND5 -833427 sc-eQTL 7.37e-01 -0.0365 0.108 0.637 PB L2
ENSG00000123473 STIL 629395 sc-eQTL 1.06e-02 0.153 0.0593 0.602 Pro_T L2
ENSG00000162368 CMPK1 609745 sc-eQTL 6.61e-02 0.162 0.0877 0.602 Pro_T L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 4.93e-01 0.0519 0.0756 0.607 Treg L2
ENSG00000162368 CMPK1 609745 sc-eQTL 1.91e-01 -0.0899 0.0685 0.607 Treg L2
ENSG00000162373 BEND5 -833427 sc-eQTL 7.42e-01 0.0246 0.0746 0.607 Treg L2
ENSG00000123473 STIL 629395 sc-eQTL 2.28e-01 -0.0965 0.0797 0.6 cDC L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 6.38e-01 -0.0444 0.0944 0.6 cDC L2
ENSG00000162366 PDZK1IP1 752498 sc-eQTL 4.12e-01 -0.0635 0.0772 0.6 cDC L2
ENSG00000162368 CMPK1 609745 sc-eQTL 7.36e-01 -0.0294 0.0871 0.6 cDC L2
ENSG00000162373 BEND5 -833427 sc-eQTL 5.16e-01 -0.0498 0.0765 0.6 cDC L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 4.99e-01 -0.053 0.0783 0.607 cMono_IL1B L2
ENSG00000162368 CMPK1 609745 sc-eQTL 7.13e-01 -0.0262 0.0711 0.607 cMono_IL1B L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 7.12e-02 0.152 0.084 0.607 cMono_S100A L2
ENSG00000162368 CMPK1 609745 sc-eQTL 7.37e-01 0.0274 0.0813 0.607 cMono_S100A L2
ENSG00000123473 STIL 629395 sc-eQTL 1.85e-01 0.116 0.0873 0.597 gdT L2
ENSG00000162368 CMPK1 609745 sc-eQTL 9.03e-01 0.0125 0.102 0.597 gdT L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 6.82e-01 -0.0366 0.0892 0.602 intMono L2
ENSG00000162368 CMPK1 609745 sc-eQTL 7.43e-01 0.0289 0.0881 0.602 intMono L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 4.46e-01 0.0546 0.0715 0.606 ncMono L2
ENSG00000162368 CMPK1 609745 sc-eQTL 9.40e-01 0.0063 0.0834 0.606 ncMono L2
ENSG00000123473 STIL 629395 sc-eQTL 7.23e-01 0.0306 0.0861 0.602 pDC L2
ENSG00000132122 SPATA6 -528666 sc-eQTL 4.00e-01 0.0822 0.0974 0.602 pDC L2
ENSG00000162366 PDZK1IP1 752498 sc-eQTL 1.38e-01 -0.117 0.0786 0.602 pDC L2
ENSG00000162368 CMPK1 609745 sc-eQTL 7.36e-02 -0.169 0.0936 0.602 pDC L2
ENSG00000162373 BEND5 -833427 sc-eQTL 6.23e-01 0.0457 0.0928 0.602 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -528666 sc-eQTL 3.04e-01 -0.0909 0.0883 0.607 B_Memory LOneK1K
ENSG00000162368 CMPK1 609745 sc-eQTL 3.59e-01 0.065 0.0707 0.607 B_Memory LOneK1K
ENSG00000162373 BEND5 -833427 sc-eQTL 7.38e-01 0.0249 0.0743 0.607 B_Memory LOneK1K
ENSG00000132122 SPATA6 -528666 sc-eQTL 2.56e-01 0.103 0.0907 0.607 B_Naive LOneK1K
ENSG00000162368 CMPK1 609745 sc-eQTL 8.50e-01 -0.0135 0.071 0.607 B_Naive LOneK1K
ENSG00000162373 BEND5 -833427 sc-eQTL 9.76e-01 -0.0016 0.0524 0.607 B_Naive LOneK1K
ENSG00000132122 SPATA6 -528666 sc-eQTL 6.47e-01 0.0345 0.0752 0.607 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 609745 sc-eQTL 7.87e-01 0.0177 0.0652 0.607 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -528666 sc-eQTL 2.26e-01 0.0794 0.0654 0.603 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 609745 sc-eQTL 5.55e-01 0.0453 0.0765 0.603 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 609745 sc-eQTL 2.75e-01 -0.0603 0.0551 0.608 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162373 \N -833427 2.67e-07 1.3e-07 4.98e-08 1.82e-07 9.79e-08 9.48e-08 1.67e-07 5.53e-08 1.45e-07 5.42e-08 1.52e-07 9.19e-08 1.45e-07 7.13e-08 6.12e-08 7.53e-08 4.09e-08 1.27e-07 5.97e-08 4.78e-08 1.19e-07 1.24e-07 1.45e-07 3.03e-08 1.63e-07 1.14e-07 1.13e-07 9.61e-08 1.16e-07 1.05e-07 9.92e-08 3.55e-08 3.96e-08 8.25e-08 4.84e-08 3.6e-08 5.59e-08 8.61e-08 6.55e-08 3.86e-08 4.94e-08 1.33e-07 5.24e-08 7.35e-09 3.84e-08 1.84e-08 1.21e-07 1.89e-09 4.94e-08
ENSG00000186564 \N 507525 6.09e-07 3.11e-07 8.51e-08 2.92e-07 1.07e-07 1.57e-07 4.42e-07 8.86e-08 2.38e-07 1.6e-07 4.13e-07 2.49e-07 4.11e-07 9.48e-08 1.18e-07 1.33e-07 1.17e-07 2.9e-07 1.27e-07 8.25e-08 1.52e-07 2.51e-07 2.56e-07 6.52e-08 5.53e-07 1.94e-07 2.23e-07 1.69e-07 2.11e-07 3.15e-07 1.78e-07 7.41e-08 4.93e-08 1.02e-07 2.43e-07 4.68e-08 7.52e-08 6.46e-08 4.82e-08 7.65e-08 3.68e-08 2.9e-07 1.7e-08 5.96e-09 7.89e-08 8.76e-09 1.03e-07 2.99e-09 4.61e-08