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Genes within 1Mb (chr1:47879660:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -592548 sc-eQTL 6.52e-01 -0.0423 0.0936 0.233 B L1
ENSG00000162368 CMPK1 545863 sc-eQTL 7.27e-01 -0.0227 0.0649 0.233 B L1
ENSG00000162373 BEND5 -897309 sc-eQTL 8.21e-01 0.0123 0.0541 0.233 B L1
ENSG00000132122 SPATA6 -592548 sc-eQTL 1.34e-01 0.139 0.0927 0.233 CD4T L1
ENSG00000162368 CMPK1 545863 sc-eQTL 6.24e-01 -0.0305 0.0622 0.233 CD4T L1
ENSG00000162373 BEND5 -897309 sc-eQTL 8.84e-01 -0.012 0.0827 0.233 CD4T L1
ENSG00000162368 CMPK1 545863 sc-eQTL 4.71e-01 -0.0413 0.0572 0.233 CD8T L1
ENSG00000162373 BEND5 -897309 sc-eQTL 4.60e-01 0.0396 0.0535 0.233 CD8T L1
ENSG00000123473 STIL 565513 sc-eQTL 8.53e-01 -0.0162 0.0872 0.239 DC L1
ENSG00000132122 SPATA6 -592548 sc-eQTL 6.12e-01 -0.0496 0.0976 0.239 DC L1
ENSG00000162366 PDZK1IP1 688616 sc-eQTL 6.49e-01 -0.0376 0.0827 0.239 DC L1
ENSG00000162368 CMPK1 545863 sc-eQTL 8.74e-01 -0.013 0.0816 0.239 DC L1
ENSG00000162373 BEND5 -897309 sc-eQTL 4.64e-01 -0.0606 0.0827 0.239 DC L1
ENSG00000132122 SPATA6 -592548 sc-eQTL 6.57e-01 0.0308 0.0692 0.233 Mono L1
ENSG00000162368 CMPK1 545863 sc-eQTL 7.15e-01 0.0251 0.0687 0.233 Mono L1
ENSG00000162368 CMPK1 545863 sc-eQTL 1.60e-01 -0.0818 0.058 0.232 NK L1
ENSG00000123473 STIL 565513 sc-eQTL 1.46e-01 0.0737 0.0505 0.233 Other_T L1
ENSG00000162368 CMPK1 545863 sc-eQTL 7.84e-01 0.0221 0.0804 0.233 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -592548 sc-eQTL 4.65e-01 0.0655 0.0896 0.232 B_Activated L2
ENSG00000162368 CMPK1 545863 sc-eQTL 9.13e-01 0.0117 0.107 0.232 B_Activated L2
ENSG00000162373 BEND5 -897309 sc-eQTL 5.07e-01 0.0714 0.108 0.232 B_Activated L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 3.20e-01 -0.0949 0.0952 0.234 B_Intermediate L2
ENSG00000162368 CMPK1 545863 sc-eQTL 2.29e-01 -0.0966 0.08 0.234 B_Intermediate L2
ENSG00000162373 BEND5 -897309 sc-eQTL 4.75e-01 0.0619 0.0866 0.234 B_Intermediate L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 6.72e-01 0.0371 0.0876 0.235 B_Memory L2
ENSG00000162368 CMPK1 545863 sc-eQTL 4.91e-01 0.0591 0.0858 0.235 B_Memory L2
ENSG00000162373 BEND5 -897309 sc-eQTL 8.28e-01 0.022 0.101 0.235 B_Memory L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 7.86e-01 -0.0261 0.0961 0.233 B_Naive1 L2
ENSG00000162368 CMPK1 545863 sc-eQTL 3.17e-01 -0.0773 0.0771 0.233 B_Naive1 L2
ENSG00000162373 BEND5 -897309 sc-eQTL 6.03e-01 -0.0333 0.0638 0.233 B_Naive1 L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 1.97e-01 0.128 0.0989 0.234 B_Naive2 L2
ENSG00000162368 CMPK1 545863 sc-eQTL 7.50e-01 0.0262 0.0823 0.234 B_Naive2 L2
ENSG00000162373 BEND5 -897309 sc-eQTL 6.86e-01 0.0299 0.0739 0.234 B_Naive2 L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 8.67e-01 0.0145 0.0865 0.234 CD4_CTL L2
ENSG00000162368 CMPK1 545863 sc-eQTL 3.84e-01 0.0853 0.0976 0.234 CD4_CTL L2
ENSG00000162373 BEND5 -897309 sc-eQTL 2.36e-01 0.0789 0.0664 0.234 CD4_CTL L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 2.89e-02 0.211 0.0961 0.233 CD4_Naive L2
ENSG00000162368 CMPK1 545863 sc-eQTL 6.18e-01 -0.0298 0.0597 0.233 CD4_Naive L2
ENSG00000162373 BEND5 -897309 sc-eQTL 7.87e-01 -0.0252 0.0934 0.233 CD4_Naive L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 6.34e-01 0.0454 0.0952 0.233 CD4_TCM L2
ENSG00000162368 CMPK1 545863 sc-eQTL 9.20e-01 -0.0066 0.066 0.233 CD4_TCM L2
ENSG00000162373 BEND5 -897309 sc-eQTL 7.80e-01 -0.0273 0.0977 0.233 CD4_TCM L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 1.41e-01 -0.148 0.0999 0.233 CD4_TEM L2
ENSG00000162368 CMPK1 545863 sc-eQTL 9.43e-01 0.00593 0.083 0.233 CD4_TEM L2
ENSG00000162373 BEND5 -897309 sc-eQTL 8.49e-01 -0.0159 0.0833 0.233 CD4_TEM L2
ENSG00000162368 CMPK1 545863 sc-eQTL 7.27e-01 -0.0269 0.0768 0.233 CD8_CTL L2
ENSG00000162373 BEND5 -897309 sc-eQTL 2.61e-01 -0.0857 0.0759 0.233 CD8_CTL L2
ENSG00000162368 CMPK1 545863 sc-eQTL 8.99e-01 0.00926 0.0731 0.233 CD8_Naive L2
ENSG00000162373 BEND5 -897309 sc-eQTL 5.71e-01 0.0511 0.09 0.233 CD8_Naive L2
ENSG00000162368 CMPK1 545863 sc-eQTL 2.03e-01 -0.107 0.0837 0.234 CD8_TCM L2
ENSG00000162373 BEND5 -897309 sc-eQTL 7.01e-01 0.0372 0.097 0.234 CD8_TCM L2
ENSG00000162368 CMPK1 545863 sc-eQTL 8.58e-01 -0.0175 0.0977 0.226 CD8_TEM L2
ENSG00000162373 BEND5 -897309 sc-eQTL 7.92e-01 -0.0217 0.0821 0.226 CD8_TEM L2
ENSG00000123473 STIL 565513 sc-eQTL 9.56e-01 0.00444 0.081 0.234 MAIT L2
ENSG00000162368 CMPK1 545863 sc-eQTL 4.07e-01 0.0672 0.0809 0.234 MAIT L2
ENSG00000162368 CMPK1 545863 sc-eQTL 2.66e-01 0.105 0.0943 0.233 NK_CD56bright L2
ENSG00000162368 CMPK1 545863 sc-eQTL 2.51e-02 -0.16 0.0708 0.233 NK_CD56dim L2
ENSG00000162368 CMPK1 545863 sc-eQTL 9.55e-01 0.00541 0.0957 0.228 NK_HLA L2
ENSG00000162368 CMPK1 545863 sc-eQTL 2.65e-01 -0.0963 0.0862 0.233 NK_cytokine L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 8.00e-01 -0.0212 0.0831 0.237 PB L2
ENSG00000162368 CMPK1 545863 sc-eQTL 5.94e-01 0.0591 0.111 0.237 PB L2
ENSG00000162373 BEND5 -897309 sc-eQTL 8.71e-01 -0.0192 0.118 0.237 PB L2
ENSG00000123473 STIL 565513 sc-eQTL 2.74e-02 0.141 0.0636 0.23 Pro_T L2
ENSG00000162368 CMPK1 545863 sc-eQTL 2.21e-03 0.286 0.0922 0.23 Pro_T L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 1.66e-01 0.112 0.0809 0.233 Treg L2
ENSG00000162368 CMPK1 545863 sc-eQTL 4.17e-01 -0.06 0.0737 0.233 Treg L2
ENSG00000162373 BEND5 -897309 sc-eQTL 4.31e-01 0.063 0.08 0.233 Treg L2
ENSG00000123473 STIL 565513 sc-eQTL 1.78e-01 -0.116 0.0861 0.244 cDC L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 6.29e-01 -0.0494 0.102 0.244 cDC L2
ENSG00000162366 PDZK1IP1 688616 sc-eQTL 6.80e-01 -0.0346 0.0836 0.244 cDC L2
ENSG00000162368 CMPK1 545863 sc-eQTL 5.66e-01 0.0541 0.0941 0.244 cDC L2
ENSG00000162373 BEND5 -897309 sc-eQTL 8.95e-01 0.011 0.0828 0.244 cDC L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 8.22e-01 -0.019 0.0842 0.233 cMono_IL1B L2
ENSG00000162368 CMPK1 545863 sc-eQTL 8.56e-01 0.0139 0.0764 0.233 cMono_IL1B L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 4.92e-01 0.0626 0.0909 0.233 cMono_S100A L2
ENSG00000162368 CMPK1 545863 sc-eQTL 3.03e-01 0.0901 0.0872 0.233 cMono_S100A L2
ENSG00000123473 STIL 565513 sc-eQTL 2.34e-01 0.113 0.0945 0.23 gdT L2
ENSG00000162368 CMPK1 545863 sc-eQTL 5.56e-01 0.065 0.11 0.23 gdT L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 4.80e-01 -0.0679 0.0961 0.238 intMono L2
ENSG00000162368 CMPK1 545863 sc-eQTL 6.44e-01 -0.0439 0.0949 0.238 intMono L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 5.18e-01 0.0502 0.0775 0.235 ncMono L2
ENSG00000162368 CMPK1 545863 sc-eQTL 1.05e-01 -0.146 0.0898 0.235 ncMono L2
ENSG00000123473 STIL 565513 sc-eQTL 4.18e-01 0.0771 0.095 0.229 pDC L2
ENSG00000132122 SPATA6 -592548 sc-eQTL 9.04e-01 0.0131 0.108 0.229 pDC L2
ENSG00000162366 PDZK1IP1 688616 sc-eQTL 8.59e-01 -0.0156 0.0875 0.229 pDC L2
ENSG00000162368 CMPK1 545863 sc-eQTL 4.19e-01 -0.0845 0.104 0.229 pDC L2
ENSG00000162373 BEND5 -897309 sc-eQTL 2.34e-01 -0.122 0.102 0.229 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -592548 sc-eQTL 5.36e-01 -0.0593 0.0958 0.233 B_Memory LOneK1K
ENSG00000162368 CMPK1 545863 sc-eQTL 5.12e-01 -0.0504 0.0767 0.233 B_Memory LOneK1K
ENSG00000162373 BEND5 -897309 sc-eQTL 3.49e-01 0.0753 0.0803 0.233 B_Memory LOneK1K
ENSG00000132122 SPATA6 -592548 sc-eQTL 8.03e-01 0.0243 0.0974 0.233 B_Naive LOneK1K
ENSG00000162368 CMPK1 545863 sc-eQTL 6.29e-01 -0.0368 0.0761 0.233 B_Naive LOneK1K
ENSG00000162373 BEND5 -897309 sc-eQTL 9.84e-01 0.00115 0.0562 0.233 B_Naive LOneK1K
ENSG00000132122 SPATA6 -592548 sc-eQTL 8.56e-01 0.0146 0.0806 0.233 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 545863 sc-eQTL 5.32e-01 0.0436 0.0697 0.233 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -592548 sc-eQTL 4.77e-01 0.05 0.0702 0.233 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 545863 sc-eQTL 2.00e-01 -0.105 0.0817 0.233 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 545863 sc-eQTL 2.47e-02 -0.134 0.059 0.233 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000186564 FOXD2 443643 eQTL 3.12e-03 0.0839 0.0283 0.00264 0.00146 0.234
ENSG00000235105 AL356968.2 -556307 eQTL 0.0499 0.0893 0.0455 0.0 0.0 0.234

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000186564 FOXD2 443643 3.92e-07 3.12e-07 8.55e-08 2.79e-07 1.06e-07 1.25e-07 3.94e-07 6.75e-08 2.04e-07 1.46e-07 2.84e-07 1.91e-07 4.11e-07 9.18e-08 8.45e-08 1.14e-07 9.3e-08 2.66e-07 1.55e-07 7.26e-08 1.6e-07 2.3e-07 2.56e-07 7.22e-08 4.11e-07 1.82e-07 1.57e-07 1.69e-07 2.03e-07 2.89e-07 1.59e-07 5.46e-08 5.58e-08 1.01e-07 1.56e-07 5.51e-08 9.77e-08 6.31e-08 5.98e-08 7.65e-08 3.46e-08 3.55e-07 3.37e-08 1.77e-08 8.01e-08 9.31e-09 9.25e-08 3.09e-09 5.56e-08