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Genes within 1Mb (chr1:47855873:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -616335 sc-eQTL 1.00e-01 0.141 0.0853 0.517 B L1
ENSG00000162368 CMPK1 522076 sc-eQTL 5.22e-01 0.0382 0.0594 0.517 B L1
ENSG00000162373 BEND5 -921096 sc-eQTL 2.37e-02 -0.111 0.0489 0.517 B L1
ENSG00000132122 SPATA6 -616335 sc-eQTL 6.26e-01 0.041 0.0841 0.517 CD4T L1
ENSG00000162368 CMPK1 522076 sc-eQTL 6.11e-01 -0.0286 0.0561 0.517 CD4T L1
ENSG00000162373 BEND5 -921096 sc-eQTL 6.93e-01 0.0295 0.0746 0.517 CD4T L1
ENSG00000162368 CMPK1 522076 sc-eQTL 9.28e-01 0.00471 0.052 0.517 CD8T L1
ENSG00000162373 BEND5 -921096 sc-eQTL 5.86e-01 0.0265 0.0486 0.517 CD8T L1
ENSG00000123473 STIL 541726 sc-eQTL 2.74e-01 0.0865 0.0789 0.509 DC L1
ENSG00000132122 SPATA6 -616335 sc-eQTL 5.55e-01 0.0524 0.0885 0.509 DC L1
ENSG00000162366 PDZK1IP1 664829 sc-eQTL 7.11e-01 0.0278 0.075 0.509 DC L1
ENSG00000162368 CMPK1 522076 sc-eQTL 8.49e-01 -0.0142 0.0741 0.509 DC L1
ENSG00000162373 BEND5 -921096 sc-eQTL 1.06e-02 0.191 0.0739 0.509 DC L1
ENSG00000132122 SPATA6 -616335 sc-eQTL 5.68e-01 -0.0363 0.0635 0.517 Mono L1
ENSG00000162368 CMPK1 522076 sc-eQTL 9.01e-01 -0.00788 0.063 0.517 Mono L1
ENSG00000162368 CMPK1 522076 sc-eQTL 2.01e-01 0.0682 0.0532 0.519 NK L1
ENSG00000123473 STIL 541726 sc-eQTL 1.53e-01 0.0653 0.0455 0.517 Other_T L1
ENSG00000162368 CMPK1 522076 sc-eQTL 1.38e-01 -0.107 0.0721 0.517 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -616335 sc-eQTL 6.26e-01 -0.039 0.0799 0.518 B_Activated L2
ENSG00000162368 CMPK1 522076 sc-eQTL 9.30e-01 0.00837 0.0957 0.518 B_Activated L2
ENSG00000162373 BEND5 -921096 sc-eQTL 4.89e-01 -0.0665 0.0958 0.518 B_Activated L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 8.11e-02 0.151 0.0863 0.517 B_Intermediate L2
ENSG00000162368 CMPK1 522076 sc-eQTL 3.28e-01 0.0716 0.073 0.517 B_Intermediate L2
ENSG00000162373 BEND5 -921096 sc-eQTL 2.00e-01 -0.101 0.0787 0.517 B_Intermediate L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 5.48e-02 -0.153 0.0791 0.515 B_Memory L2
ENSG00000162368 CMPK1 522076 sc-eQTL 5.61e-02 -0.149 0.0775 0.515 B_Memory L2
ENSG00000162373 BEND5 -921096 sc-eQTL 5.76e-01 -0.0517 0.0923 0.515 B_Memory L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 8.84e-01 0.0129 0.0882 0.517 B_Naive1 L2
ENSG00000162368 CMPK1 522076 sc-eQTL 2.76e-01 0.0773 0.0708 0.517 B_Naive1 L2
ENSG00000162373 BEND5 -921096 sc-eQTL 9.18e-02 -0.0986 0.0582 0.517 B_Naive1 L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 4.76e-01 0.0649 0.0909 0.517 B_Naive2 L2
ENSG00000162368 CMPK1 522076 sc-eQTL 3.07e-01 0.0771 0.0752 0.517 B_Naive2 L2
ENSG00000162373 BEND5 -921096 sc-eQTL 5.51e-01 -0.0404 0.0676 0.517 B_Naive2 L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 8.22e-01 -0.0172 0.0763 0.511 CD4_CTL L2
ENSG00000162368 CMPK1 522076 sc-eQTL 6.43e-01 -0.04 0.0863 0.511 CD4_CTL L2
ENSG00000162373 BEND5 -921096 sc-eQTL 5.82e-01 -0.0324 0.0588 0.511 CD4_CTL L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 3.70e-01 -0.0783 0.0872 0.517 CD4_Naive L2
ENSG00000162368 CMPK1 522076 sc-eQTL 6.21e-01 -0.0266 0.0537 0.517 CD4_Naive L2
ENSG00000162373 BEND5 -921096 sc-eQTL 4.77e-01 0.0598 0.0839 0.517 CD4_Naive L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 3.16e-01 0.0862 0.0857 0.517 CD4_TCM L2
ENSG00000162368 CMPK1 522076 sc-eQTL 7.17e-01 -0.0216 0.0595 0.517 CD4_TCM L2
ENSG00000162373 BEND5 -921096 sc-eQTL 8.04e-01 -0.0219 0.0882 0.517 CD4_TCM L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 2.32e-02 0.205 0.0898 0.517 CD4_TEM L2
ENSG00000162368 CMPK1 522076 sc-eQTL 3.55e-01 -0.0695 0.075 0.517 CD4_TEM L2
ENSG00000162373 BEND5 -921096 sc-eQTL 3.10e-01 -0.0765 0.0753 0.517 CD4_TEM L2
ENSG00000162368 CMPK1 522076 sc-eQTL 9.32e-01 0.00591 0.0687 0.517 CD8_CTL L2
ENSG00000162373 BEND5 -921096 sc-eQTL 9.21e-01 0.00676 0.0681 0.517 CD8_CTL L2
ENSG00000162368 CMPK1 522076 sc-eQTL 7.32e-01 -0.023 0.067 0.517 CD8_Naive L2
ENSG00000162373 BEND5 -921096 sc-eQTL 3.81e-01 0.0724 0.0825 0.517 CD8_Naive L2
ENSG00000162368 CMPK1 522076 sc-eQTL 8.69e-01 0.0126 0.0763 0.521 CD8_TCM L2
ENSG00000162373 BEND5 -921096 sc-eQTL 9.13e-01 0.00962 0.0881 0.521 CD8_TCM L2
ENSG00000162368 CMPK1 522076 sc-eQTL 8.47e-01 -0.0165 0.0854 0.521 CD8_TEM L2
ENSG00000162373 BEND5 -921096 sc-eQTL 6.55e-01 -0.032 0.0717 0.521 CD8_TEM L2
ENSG00000123473 STIL 541726 sc-eQTL 7.01e-01 -0.0282 0.0734 0.517 MAIT L2
ENSG00000162368 CMPK1 522076 sc-eQTL 7.22e-02 -0.132 0.0729 0.517 MAIT L2
ENSG00000162368 CMPK1 522076 sc-eQTL 2.23e-01 -0.105 0.0861 0.518 NK_CD56bright L2
ENSG00000162368 CMPK1 522076 sc-eQTL 2.89e-01 0.0689 0.0648 0.517 NK_CD56dim L2
ENSG00000162368 CMPK1 522076 sc-eQTL 9.61e-01 -0.0042 0.0851 0.523 NK_HLA L2
ENSG00000162368 CMPK1 522076 sc-eQTL 4.35e-01 0.0623 0.0796 0.517 NK_cytokine L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 8.13e-01 -0.0177 0.0745 0.544 PB L2
ENSG00000162368 CMPK1 522076 sc-eQTL 1.92e-02 -0.23 0.0968 0.544 PB L2
ENSG00000162373 BEND5 -921096 sc-eQTL 7.97e-01 0.0273 0.106 0.544 PB L2
ENSG00000123473 STIL 541726 sc-eQTL 6.37e-01 -0.0272 0.0575 0.52 Pro_T L2
ENSG00000162368 CMPK1 522076 sc-eQTL 5.53e-02 -0.161 0.0836 0.52 Pro_T L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 8.93e-01 -0.01 0.0742 0.517 Treg L2
ENSG00000162368 CMPK1 522076 sc-eQTL 5.44e-01 -0.041 0.0674 0.517 Treg L2
ENSG00000162373 BEND5 -921096 sc-eQTL 7.20e-01 0.0262 0.0732 0.517 Treg L2
ENSG00000123473 STIL 541726 sc-eQTL 3.36e-01 0.0754 0.0781 0.502 cDC L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 2.09e-01 -0.116 0.0921 0.502 cDC L2
ENSG00000162366 PDZK1IP1 664829 sc-eQTL 4.96e-01 0.0516 0.0756 0.502 cDC L2
ENSG00000162368 CMPK1 522076 sc-eQTL 8.88e-01 -0.0121 0.0853 0.502 cDC L2
ENSG00000162373 BEND5 -921096 sc-eQTL 9.10e-01 -0.00849 0.075 0.502 cDC L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 4.37e-01 -0.0606 0.0779 0.517 cMono_IL1B L2
ENSG00000162368 CMPK1 522076 sc-eQTL 4.92e-01 -0.0487 0.0707 0.517 cMono_IL1B L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 3.05e-01 -0.086 0.0836 0.517 cMono_S100A L2
ENSG00000162368 CMPK1 522076 sc-eQTL 4.55e-01 -0.0603 0.0804 0.517 cMono_S100A L2
ENSG00000123473 STIL 541726 sc-eQTL 9.56e-01 0.00473 0.0865 0.533 gdT L2
ENSG00000162368 CMPK1 522076 sc-eQTL 7.57e-01 -0.0312 0.101 0.533 gdT L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 7.11e-01 0.033 0.0889 0.513 intMono L2
ENSG00000162368 CMPK1 522076 sc-eQTL 4.58e-01 -0.0652 0.0876 0.513 intMono L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 2.09e-01 0.0896 0.0712 0.514 ncMono L2
ENSG00000162368 CMPK1 522076 sc-eQTL 1.53e-01 0.119 0.0828 0.514 ncMono L2
ENSG00000123473 STIL 541726 sc-eQTL 4.10e-01 0.0694 0.084 0.52 pDC L2
ENSG00000132122 SPATA6 -616335 sc-eQTL 4.10e-01 0.0786 0.0952 0.52 pDC L2
ENSG00000162366 PDZK1IP1 664829 sc-eQTL 9.39e-01 0.00597 0.0774 0.52 pDC L2
ENSG00000162368 CMPK1 522076 sc-eQTL 9.55e-01 0.00519 0.0924 0.52 pDC L2
ENSG00000162373 BEND5 -921096 sc-eQTL 2.15e-02 0.207 0.0892 0.52 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -616335 sc-eQTL 3.69e-01 0.0791 0.088 0.517 B_Memory LOneK1K
ENSG00000162368 CMPK1 522076 sc-eQTL 6.30e-01 -0.0341 0.0705 0.517 B_Memory LOneK1K
ENSG00000162373 BEND5 -921096 sc-eQTL 1.76e-01 -0.0999 0.0736 0.517 B_Memory LOneK1K
ENSG00000132122 SPATA6 -616335 sc-eQTL 6.06e-01 0.0463 0.0897 0.517 B_Naive LOneK1K
ENSG00000162368 CMPK1 522076 sc-eQTL 2.52e-01 0.0802 0.0699 0.517 B_Naive LOneK1K
ENSG00000162373 BEND5 -921096 sc-eQTL 3.09e-02 -0.111 0.0511 0.517 B_Naive LOneK1K
ENSG00000132122 SPATA6 -616335 sc-eQTL 5.04e-01 -0.0497 0.0742 0.517 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 522076 sc-eQTL 3.76e-01 -0.057 0.0642 0.517 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -616335 sc-eQTL 2.51e-01 0.0746 0.0649 0.517 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 522076 sc-eQTL 4.14e-01 0.0621 0.0759 0.517 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 522076 sc-eQTL 9.08e-02 0.0925 0.0545 0.517 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000272491 AL109659.2 -373688 eQTL 0.0137 -0.076 0.0308 0.0 0.0 0.489

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000123473 \N 541726 4.68e-07 2.3e-07 6.42e-08 2.54e-07 1.1e-07 1.13e-07 3.33e-07 6.75e-08 2.04e-07 1.15e-07 2.47e-07 1.86e-07 4.05e-07 8.54e-08 6.53e-08 1.13e-07 6.63e-08 2.43e-07 7.27e-08 8.52e-08 1.27e-07 2.09e-07 1.89e-07 4.81e-08 3.27e-07 1.71e-07 1.33e-07 1.46e-07 1.47e-07 2e-07 1.52e-07 4.85e-08 4.16e-08 9.09e-08 9.25e-08 3.36e-08 6.14e-08 6.98e-08 4.83e-08 7.17e-08 3.24e-08 2.5e-07 3.55e-08 1.43e-08 4e-08 9.65e-09 7.13e-08 2.07e-09 4.69e-08
ENSG00000224805 \N 676623 3.07e-07 1.5e-07 5.49e-08 2.15e-07 9.87e-08 8.21e-08 1.99e-07 5.75e-08 1.54e-07 6.75e-08 1.63e-07 1.22e-07 2.24e-07 7.95e-08 5.72e-08 7.89e-08 4.31e-08 1.56e-07 6.75e-08 5.2e-08 1.25e-07 1.39e-07 1.58e-07 3.4e-08 2.02e-07 1.23e-07 1.17e-07 1.06e-07 1.31e-07 1.05e-07 1.09e-07 3.03e-08 3.51e-08 9.76e-08 3.07e-08 3.05e-08 5.74e-08 9.03e-08 6.41e-08 3.6e-08 6.07e-08 1.52e-07 5.21e-08 1.3e-08 3.41e-08 1.8e-08 1.15e-07 1.88e-09 5.04e-08