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Genes within 1Mb (chr1:47847401:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -624807 sc-eQTL 7.54e-01 -0.0274 0.0872 0.673 B L1
ENSG00000162368 CMPK1 513604 sc-eQTL 6.09e-01 -0.031 0.0604 0.673 B L1
ENSG00000162373 BEND5 -929568 sc-eQTL 5.04e-01 -0.0336 0.0503 0.673 B L1
ENSG00000132122 SPATA6 -624807 sc-eQTL 1.95e-01 -0.113 0.0868 0.673 CD4T L1
ENSG00000162368 CMPK1 513604 sc-eQTL 5.32e-01 0.0364 0.0582 0.673 CD4T L1
ENSG00000162373 BEND5 -929568 sc-eQTL 4.35e-01 0.0605 0.0773 0.673 CD4T L1
ENSG00000162368 CMPK1 513604 sc-eQTL 6.86e-01 0.0215 0.0531 0.673 CD8T L1
ENSG00000162373 BEND5 -929568 sc-eQTL 4.73e-01 -0.0357 0.0496 0.673 CD8T L1
ENSG00000123473 STIL 533254 sc-eQTL 9.61e-01 -0.004 0.0818 0.671 DC L1
ENSG00000132122 SPATA6 -624807 sc-eQTL 2.09e-01 0.115 0.0913 0.671 DC L1
ENSG00000162366 PDZK1IP1 656357 sc-eQTL 8.63e-01 0.0134 0.0776 0.671 DC L1
ENSG00000162368 CMPK1 513604 sc-eQTL 9.31e-01 -0.00667 0.0766 0.671 DC L1
ENSG00000162373 BEND5 -929568 sc-eQTL 7.93e-01 0.0204 0.0777 0.671 DC L1
ENSG00000132122 SPATA6 -624807 sc-eQTL 8.02e-01 -0.0163 0.0648 0.673 Mono L1
ENSG00000162368 CMPK1 513604 sc-eQTL 4.36e-01 -0.0501 0.0642 0.673 Mono L1
ENSG00000162368 CMPK1 513604 sc-eQTL 3.21e-01 0.0535 0.0537 0.674 NK L1
ENSG00000123473 STIL 533254 sc-eQTL 9.72e-02 -0.0773 0.0464 0.673 Other_T L1
ENSG00000162368 CMPK1 513604 sc-eQTL 4.52e-01 0.0557 0.0738 0.673 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -624807 sc-eQTL 4.20e-01 -0.0676 0.0837 0.676 B_Activated L2
ENSG00000162368 CMPK1 513604 sc-eQTL 4.99e-01 -0.0679 0.1 0.676 B_Activated L2
ENSG00000162373 BEND5 -929568 sc-eQTL 6.54e-01 -0.0452 0.101 0.676 B_Activated L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 4.98e-01 0.0606 0.0894 0.674 B_Intermediate L2
ENSG00000162368 CMPK1 513604 sc-eQTL 5.61e-01 0.0438 0.0753 0.674 B_Intermediate L2
ENSG00000162373 BEND5 -929568 sc-eQTL 3.58e-01 -0.0747 0.0812 0.674 B_Intermediate L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 9.47e-01 0.00542 0.0816 0.67 B_Memory L2
ENSG00000162368 CMPK1 513604 sc-eQTL 4.72e-01 -0.0575 0.0799 0.67 B_Memory L2
ENSG00000162373 BEND5 -929568 sc-eQTL 8.28e-01 0.0206 0.0944 0.67 B_Memory L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 6.18e-01 -0.0449 0.0898 0.673 B_Naive1 L2
ENSG00000162368 CMPK1 513604 sc-eQTL 9.57e-01 0.00389 0.0723 0.673 B_Naive1 L2
ENSG00000162373 BEND5 -929568 sc-eQTL 9.47e-01 0.00399 0.0597 0.673 B_Naive1 L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 3.42e-02 -0.195 0.0916 0.672 B_Naive2 L2
ENSG00000162368 CMPK1 513604 sc-eQTL 6.64e-01 -0.0333 0.0767 0.672 B_Naive2 L2
ENSG00000162373 BEND5 -929568 sc-eQTL 4.21e-01 -0.0554 0.0688 0.672 B_Naive2 L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 4.34e-01 0.0632 0.0806 0.668 CD4_CTL L2
ENSG00000162368 CMPK1 513604 sc-eQTL 8.41e-01 -0.0183 0.0914 0.668 CD4_CTL L2
ENSG00000162373 BEND5 -929568 sc-eQTL 3.47e-01 -0.0585 0.0621 0.668 CD4_CTL L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 1.36e-01 -0.135 0.0903 0.673 CD4_Naive L2
ENSG00000162368 CMPK1 513604 sc-eQTL 5.23e-01 0.0356 0.0558 0.673 CD4_Naive L2
ENSG00000162373 BEND5 -929568 sc-eQTL 4.06e-01 0.0726 0.0872 0.673 CD4_Naive L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 2.46e-01 -0.104 0.0891 0.673 CD4_TCM L2
ENSG00000162368 CMPK1 513604 sc-eQTL 8.13e-01 0.0147 0.0619 0.673 CD4_TCM L2
ENSG00000162373 BEND5 -929568 sc-eQTL 9.80e-01 0.0023 0.0917 0.673 CD4_TCM L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 1.73e-01 0.128 0.0935 0.673 CD4_TEM L2
ENSG00000162368 CMPK1 513604 sc-eQTL 6.54e-01 0.0348 0.0776 0.673 CD4_TEM L2
ENSG00000162373 BEND5 -929568 sc-eQTL 8.09e-01 0.0188 0.0779 0.673 CD4_TEM L2
ENSG00000162368 CMPK1 513604 sc-eQTL 1.81e-01 0.0956 0.0713 0.673 CD8_CTL L2
ENSG00000162373 BEND5 -929568 sc-eQTL 2.14e-02 0.163 0.0701 0.673 CD8_CTL L2
ENSG00000162368 CMPK1 513604 sc-eQTL 3.08e-01 -0.07 0.0685 0.673 CD8_Naive L2
ENSG00000162373 BEND5 -929568 sc-eQTL 4.47e-01 -0.0645 0.0846 0.673 CD8_Naive L2
ENSG00000162368 CMPK1 513604 sc-eQTL 2.33e-01 0.0938 0.0784 0.676 CD8_TCM L2
ENSG00000162373 BEND5 -929568 sc-eQTL 9.07e-01 0.0106 0.0908 0.676 CD8_TCM L2
ENSG00000162368 CMPK1 513604 sc-eQTL 2.67e-01 0.0992 0.089 0.678 CD8_TEM L2
ENSG00000162373 BEND5 -929568 sc-eQTL 9.80e-01 -0.00191 0.075 0.678 CD8_TEM L2
ENSG00000123473 STIL 533254 sc-eQTL 4.93e-01 0.0518 0.0754 0.671 MAIT L2
ENSG00000162368 CMPK1 513604 sc-eQTL 9.92e-01 -0.000795 0.0755 0.671 MAIT L2
ENSG00000162368 CMPK1 513604 sc-eQTL 7.54e-01 -0.0277 0.0881 0.676 NK_CD56bright L2
ENSG00000162368 CMPK1 513604 sc-eQTL 1.03e-01 0.107 0.0655 0.672 NK_CD56dim L2
ENSG00000162368 CMPK1 513604 sc-eQTL 7.24e-01 -0.0308 0.0871 0.68 NK_HLA L2
ENSG00000162368 CMPK1 513604 sc-eQTL 1.81e-01 0.107 0.0794 0.672 NK_cytokine L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 6.56e-01 0.0349 0.0782 0.656 PB L2
ENSG00000162368 CMPK1 513604 sc-eQTL 5.12e-01 -0.0685 0.104 0.656 PB L2
ENSG00000162373 BEND5 -929568 sc-eQTL 5.85e-01 0.0608 0.111 0.656 PB L2
ENSG00000123473 STIL 533254 sc-eQTL 1.46e-02 -0.144 0.0584 0.676 Pro_T L2
ENSG00000162368 CMPK1 513604 sc-eQTL 1.63e-02 -0.208 0.0858 0.676 Pro_T L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 4.36e-01 -0.0596 0.0763 0.673 Treg L2
ENSG00000162368 CMPK1 513604 sc-eQTL 4.78e-01 0.0493 0.0693 0.673 Treg L2
ENSG00000162373 BEND5 -929568 sc-eQTL 4.11e-01 -0.0619 0.0752 0.673 Treg L2
ENSG00000123473 STIL 533254 sc-eQTL 1.72e-01 0.111 0.0809 0.668 cDC L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 6.35e-02 0.177 0.0951 0.668 cDC L2
ENSG00000162366 PDZK1IP1 656357 sc-eQTL 9.51e-01 0.00482 0.0786 0.668 cDC L2
ENSG00000162368 CMPK1 513604 sc-eQTL 7.99e-01 -0.0225 0.0885 0.668 cDC L2
ENSG00000162373 BEND5 -929568 sc-eQTL 8.51e-01 0.0147 0.0778 0.668 cDC L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 8.26e-01 0.0173 0.0789 0.673 cMono_IL1B L2
ENSG00000162368 CMPK1 513604 sc-eQTL 6.47e-01 0.0328 0.0715 0.673 cMono_IL1B L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 6.32e-01 -0.0408 0.085 0.673 cMono_S100A L2
ENSG00000162368 CMPK1 513604 sc-eQTL 1.30e-01 -0.123 0.0813 0.673 cMono_S100A L2
ENSG00000123473 STIL 533254 sc-eQTL 6.44e-01 -0.0414 0.0894 0.682 gdT L2
ENSG00000162368 CMPK1 513604 sc-eQTL 7.54e-01 -0.0327 0.104 0.682 gdT L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 2.71e-01 0.0983 0.0891 0.671 intMono L2
ENSG00000162368 CMPK1 513604 sc-eQTL 6.82e-01 0.0362 0.0882 0.671 intMono L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 1.21e-01 -0.112 0.0717 0.674 ncMono L2
ENSG00000162368 CMPK1 513604 sc-eQTL 4.27e-01 0.0668 0.0839 0.674 ncMono L2
ENSG00000123473 STIL 533254 sc-eQTL 2.55e-01 -0.1 0.0877 0.678 pDC L2
ENSG00000132122 SPATA6 -624807 sc-eQTL 7.20e-01 0.0358 0.0998 0.678 pDC L2
ENSG00000162366 PDZK1IP1 656357 sc-eQTL 5.07e-01 0.0537 0.0809 0.678 pDC L2
ENSG00000162368 CMPK1 513604 sc-eQTL 9.37e-01 -0.00768 0.0967 0.678 pDC L2
ENSG00000162373 BEND5 -929568 sc-eQTL 8.81e-01 0.0142 0.0949 0.678 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -624807 sc-eQTL 3.97e-01 0.0756 0.089 0.673 B_Memory LOneK1K
ENSG00000162368 CMPK1 513604 sc-eQTL 8.19e-01 0.0164 0.0714 0.673 B_Memory LOneK1K
ENSG00000162373 BEND5 -929568 sc-eQTL 3.35e-01 -0.0721 0.0747 0.673 B_Memory LOneK1K
ENSG00000132122 SPATA6 -624807 sc-eQTL 1.88e-01 -0.12 0.0905 0.673 B_Naive LOneK1K
ENSG00000162368 CMPK1 513604 sc-eQTL 7.16e-01 -0.0258 0.071 0.673 B_Naive LOneK1K
ENSG00000162373 BEND5 -929568 sc-eQTL 4.35e-01 -0.0409 0.0523 0.673 B_Naive LOneK1K
ENSG00000132122 SPATA6 -624807 sc-eQTL 9.30e-01 -0.00659 0.0753 0.673 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 513604 sc-eQTL 5.76e-01 -0.0365 0.0652 0.673 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -624807 sc-eQTL 1.57e-01 -0.0928 0.0652 0.675 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 513604 sc-eQTL 6.61e-01 0.0336 0.0765 0.675 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 513604 sc-eQTL 1.37e-01 0.082 0.0549 0.672 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000186564 FOXD2 411384 eQTL 4.89e-02 -0.0517 0.0262 0.0 0.0 0.321
ENSG00000235105 AL356968.2 -588566 eQTL 0.0258 -0.0937 0.0419 0.0 0.0 0.321

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina