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Genes within 1Mb (chr1:47838753:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -633455 sc-eQTL 4.36e-01 -0.0723 0.0927 0.246 B L1
ENSG00000162368 CMPK1 504956 sc-eQTL 8.57e-01 -0.0116 0.0643 0.246 B L1
ENSG00000162373 BEND5 -938216 sc-eQTL 6.23e-01 0.0263 0.0535 0.246 B L1
ENSG00000132122 SPATA6 -633455 sc-eQTL 2.75e-01 0.101 0.0921 0.246 CD4T L1
ENSG00000162368 CMPK1 504956 sc-eQTL 6.37e-01 -0.0291 0.0617 0.246 CD4T L1
ENSG00000162373 BEND5 -938216 sc-eQTL 9.65e-01 0.00357 0.082 0.246 CD4T L1
ENSG00000162368 CMPK1 504956 sc-eQTL 4.58e-01 -0.0421 0.0567 0.246 CD8T L1
ENSG00000162373 BEND5 -938216 sc-eQTL 4.32e-01 0.0418 0.053 0.246 CD8T L1
ENSG00000123473 STIL 524606 sc-eQTL 5.69e-01 -0.0498 0.0873 0.252 DC L1
ENSG00000132122 SPATA6 -633455 sc-eQTL 7.53e-01 -0.0308 0.0978 0.252 DC L1
ENSG00000162366 PDZK1IP1 647709 sc-eQTL 6.67e-01 -0.0357 0.0828 0.252 DC L1
ENSG00000162368 CMPK1 504956 sc-eQTL 9.36e-01 0.00654 0.0817 0.252 DC L1
ENSG00000162373 BEND5 -938216 sc-eQTL 6.09e-01 -0.0425 0.0829 0.252 DC L1
ENSG00000132122 SPATA6 -633455 sc-eQTL 7.42e-01 0.0227 0.0688 0.246 Mono L1
ENSG00000162368 CMPK1 504956 sc-eQTL 4.82e-01 0.048 0.0682 0.246 Mono L1
ENSG00000162368 CMPK1 504956 sc-eQTL 2.02e-01 -0.0739 0.0577 0.245 NK L1
ENSG00000123473 STIL 524606 sc-eQTL 1.69e-01 0.0692 0.0502 0.246 Other_T L1
ENSG00000162368 CMPK1 504956 sc-eQTL 9.43e-01 0.00575 0.0798 0.246 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -633455 sc-eQTL 5.39e-01 0.0549 0.0891 0.24 B_Activated L2
ENSG00000162368 CMPK1 504956 sc-eQTL 8.06e-01 0.0263 0.107 0.24 B_Activated L2
ENSG00000162373 BEND5 -938216 sc-eQTL 5.27e-01 0.0678 0.107 0.24 B_Activated L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 2.07e-01 -0.119 0.0945 0.245 B_Intermediate L2
ENSG00000162368 CMPK1 504956 sc-eQTL 2.04e-01 -0.101 0.0795 0.245 B_Intermediate L2
ENSG00000162373 BEND5 -938216 sc-eQTL 3.61e-01 0.0787 0.0861 0.245 B_Intermediate L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 6.74e-01 0.0367 0.0872 0.248 B_Memory L2
ENSG00000162368 CMPK1 504956 sc-eQTL 4.26e-01 0.0681 0.0853 0.248 B_Memory L2
ENSG00000162373 BEND5 -938216 sc-eQTL 9.12e-01 0.0111 0.101 0.248 B_Memory L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 7.47e-01 -0.031 0.0958 0.246 B_Naive1 L2
ENSG00000162368 CMPK1 504956 sc-eQTL 4.64e-01 -0.0565 0.077 0.246 B_Naive1 L2
ENSG00000162373 BEND5 -938216 sc-eQTL 5.65e-01 -0.0367 0.0636 0.246 B_Naive1 L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 3.19e-01 0.0985 0.0987 0.247 B_Naive2 L2
ENSG00000162368 CMPK1 504956 sc-eQTL 6.87e-01 0.0331 0.0819 0.247 B_Naive2 L2
ENSG00000162373 BEND5 -938216 sc-eQTL 4.95e-01 0.0502 0.0735 0.247 B_Naive2 L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 8.83e-01 -0.0126 0.0859 0.245 CD4_CTL L2
ENSG00000162368 CMPK1 504956 sc-eQTL 6.33e-01 0.0465 0.0971 0.245 CD4_CTL L2
ENSG00000162373 BEND5 -938216 sc-eQTL 1.94e-01 0.0859 0.0659 0.245 CD4_CTL L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 7.91e-02 0.169 0.0956 0.246 CD4_Naive L2
ENSG00000162368 CMPK1 504956 sc-eQTL 7.07e-01 -0.0223 0.0592 0.246 CD4_Naive L2
ENSG00000162373 BEND5 -938216 sc-eQTL 9.44e-01 -0.00652 0.0926 0.246 CD4_Naive L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 7.17e-01 0.0343 0.0946 0.246 CD4_TCM L2
ENSG00000162368 CMPK1 504956 sc-eQTL 9.06e-01 -0.00777 0.0655 0.246 CD4_TCM L2
ENSG00000162373 BEND5 -938216 sc-eQTL 8.43e-01 -0.0193 0.0971 0.246 CD4_TCM L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 1.11e-01 -0.159 0.0994 0.246 CD4_TEM L2
ENSG00000162368 CMPK1 504956 sc-eQTL 9.87e-01 0.0013 0.0826 0.246 CD4_TEM L2
ENSG00000162373 BEND5 -938216 sc-eQTL 9.63e-01 0.00383 0.083 0.246 CD4_TEM L2
ENSG00000162368 CMPK1 504956 sc-eQTL 6.24e-01 -0.0375 0.0762 0.246 CD8_CTL L2
ENSG00000162373 BEND5 -938216 sc-eQTL 1.38e-01 -0.112 0.0753 0.246 CD8_CTL L2
ENSG00000162368 CMPK1 504956 sc-eQTL 9.30e-01 0.00642 0.0726 0.246 CD8_Naive L2
ENSG00000162373 BEND5 -938216 sc-eQTL 5.10e-01 0.059 0.0895 0.246 CD8_Naive L2
ENSG00000162368 CMPK1 504956 sc-eQTL 1.70e-01 -0.114 0.0828 0.248 CD8_TCM L2
ENSG00000162373 BEND5 -938216 sc-eQTL 7.54e-01 0.0301 0.096 0.248 CD8_TCM L2
ENSG00000162368 CMPK1 504956 sc-eQTL 7.82e-01 -0.0268 0.0968 0.237 CD8_TEM L2
ENSG00000162373 BEND5 -938216 sc-eQTL 9.19e-01 -0.00827 0.0813 0.237 CD8_TEM L2
ENSG00000123473 STIL 524606 sc-eQTL 9.95e-01 0.000481 0.0804 0.247 MAIT L2
ENSG00000162368 CMPK1 504956 sc-eQTL 6.18e-01 0.0401 0.0803 0.247 MAIT L2
ENSG00000162368 CMPK1 504956 sc-eQTL 3.88e-01 0.0815 0.0941 0.242 NK_CD56bright L2
ENSG00000162368 CMPK1 504956 sc-eQTL 4.12e-02 -0.145 0.0707 0.244 NK_CD56dim L2
ENSG00000162368 CMPK1 504956 sc-eQTL 9.94e-01 -0.000772 0.0955 0.235 NK_HLA L2
ENSG00000162368 CMPK1 504956 sc-eQTL 1.75e-01 -0.117 0.0856 0.244 NK_cytokine L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 6.54e-01 -0.0374 0.0832 0.252 PB L2
ENSG00000162368 CMPK1 504956 sc-eQTL 3.98e-01 0.0938 0.111 0.252 PB L2
ENSG00000162373 BEND5 -938216 sc-eQTL 7.76e-01 -0.0336 0.118 0.252 PB L2
ENSG00000123473 STIL 524606 sc-eQTL 7.30e-02 0.114 0.0634 0.243 Pro_T L2
ENSG00000162368 CMPK1 504956 sc-eQTL 2.19e-04 0.341 0.0907 0.243 Pro_T L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 1.59e-01 0.114 0.0805 0.246 Treg L2
ENSG00000162368 CMPK1 504956 sc-eQTL 4.85e-01 -0.0514 0.0735 0.246 Treg L2
ENSG00000162373 BEND5 -938216 sc-eQTL 3.32e-01 0.0774 0.0796 0.246 Treg L2
ENSG00000123473 STIL 524606 sc-eQTL 1.26e-01 -0.131 0.0854 0.254 cDC L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 6.33e-01 -0.0485 0.101 0.254 cDC L2
ENSG00000162366 PDZK1IP1 647709 sc-eQTL 8.93e-01 -0.0112 0.0831 0.254 cDC L2
ENSG00000162368 CMPK1 504956 sc-eQTL 6.77e-01 0.0391 0.0935 0.254 cDC L2
ENSG00000162373 BEND5 -938216 sc-eQTL 7.86e-01 0.0223 0.0823 0.254 cDC L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 7.04e-01 -0.0319 0.0838 0.246 cMono_IL1B L2
ENSG00000162368 CMPK1 504956 sc-eQTL 7.62e-01 0.023 0.076 0.246 cMono_IL1B L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 5.67e-01 0.052 0.0906 0.246 cMono_S100A L2
ENSG00000162368 CMPK1 504956 sc-eQTL 1.61e-01 0.122 0.0867 0.246 cMono_S100A L2
ENSG00000123473 STIL 524606 sc-eQTL 3.10e-01 0.0958 0.0941 0.236 gdT L2
ENSG00000162368 CMPK1 504956 sc-eQTL 8.40e-01 0.0222 0.11 0.236 gdT L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 3.63e-01 -0.0873 0.0957 0.251 intMono L2
ENSG00000162368 CMPK1 504956 sc-eQTL 8.58e-01 -0.017 0.0946 0.251 intMono L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 4.51e-01 0.0585 0.0774 0.249 ncMono L2
ENSG00000162368 CMPK1 504956 sc-eQTL 8.82e-02 -0.154 0.0897 0.249 ncMono L2
ENSG00000123473 STIL 524606 sc-eQTL 5.56e-01 0.056 0.0948 0.237 pDC L2
ENSG00000132122 SPATA6 -633455 sc-eQTL 7.95e-01 -0.028 0.108 0.237 pDC L2
ENSG00000162366 PDZK1IP1 647709 sc-eQTL 9.82e-01 -0.00195 0.0873 0.237 pDC L2
ENSG00000162368 CMPK1 504956 sc-eQTL 7.66e-01 -0.0311 0.104 0.237 pDC L2
ENSG00000162373 BEND5 -938216 sc-eQTL 2.30e-01 -0.123 0.102 0.237 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -633455 sc-eQTL 4.26e-01 -0.0757 0.095 0.246 B_Memory LOneK1K
ENSG00000162368 CMPK1 504956 sc-eQTL 4.65e-01 -0.0557 0.0761 0.246 B_Memory LOneK1K
ENSG00000162373 BEND5 -938216 sc-eQTL 3.78e-01 0.0704 0.0797 0.246 B_Memory LOneK1K
ENSG00000132122 SPATA6 -633455 sc-eQTL 9.07e-01 0.0114 0.097 0.246 B_Naive LOneK1K
ENSG00000162368 CMPK1 504956 sc-eQTL 8.04e-01 -0.0188 0.0757 0.246 B_Naive LOneK1K
ENSG00000162373 BEND5 -938216 sc-eQTL 9.06e-01 0.00659 0.0559 0.246 B_Naive LOneK1K
ENSG00000132122 SPATA6 -633455 sc-eQTL 9.74e-01 0.00264 0.0801 0.246 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 504956 sc-eQTL 3.33e-01 0.0672 0.0693 0.246 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -633455 sc-eQTL 4.56e-01 0.0522 0.0699 0.246 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 504956 sc-eQTL 2.45e-01 -0.0949 0.0814 0.246 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 504956 sc-eQTL 3.84e-02 -0.123 0.0589 0.244 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000186564 FOXD2 402736 eQTL 2.80e-03 0.0857 0.0286 0.00289 0.00167 0.241
ENSG00000235105 AL356968.2 -597214 eQTL 0.0416 0.0937 0.0459 0.0 0.0 0.241

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000123473 \N 524606 5.59e-07 2.56e-07 7.45e-08 2.44e-07 1.11e-07 1.26e-07 3.57e-07 8.37e-08 2.6e-07 1.6e-07 3.25e-07 2.11e-07 4.27e-07 8.55e-08 8.45e-08 1.39e-07 1.01e-07 2.93e-07 8.68e-08 8.87e-08 1.48e-07 2.3e-07 2.33e-07 6.52e-08 3.98e-07 2.07e-07 1.74e-07 1.61e-07 1.98e-07 2.01e-07 1.78e-07 5.54e-08 4.87e-08 1.24e-07 1.16e-07 5.05e-08 6.77e-08 5.92e-08 4.74e-08 8.2e-08 5.39e-08 2.65e-07 3.37e-08 7.28e-09 5.4e-08 8.42e-09 9.19e-08 0.0 4.52e-08
ENSG00000186564 FOXD2 402736 1.01e-06 6.26e-07 1.12e-07 3.96e-07 1.1e-07 2.42e-07 6.06e-07 1.91e-07 5.88e-07 2.81e-07 8.58e-07 4.31e-07 9.37e-07 1.48e-07 2.35e-07 2.84e-07 4.54e-07 4.16e-07 2.13e-07 1.65e-07 2.35e-07 4.38e-07 4.2e-07 2.17e-07 9.26e-07 2.57e-07 3.37e-07 2.59e-07 4.39e-07 6.19e-07 3.49e-07 6.31e-08 4.42e-08 1.71e-07 3.3e-07 1.44e-07 1.1e-07 8.04e-08 6.33e-08 2.59e-08 8.29e-08 5.96e-07 4.41e-08 1.97e-08 1.34e-07 1.39e-08 1.3e-07 1.77e-08 5.86e-08