logo

Genes within 1Mb (chr1:47802773:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -669435 sc-eQTL 4.90e-01 -0.0671 0.0971 0.224 B L1
ENSG00000162368 CMPK1 468976 sc-eQTL 7.52e-01 -0.0213 0.0674 0.224 B L1
ENSG00000162373 BEND5 -974196 sc-eQTL 6.68e-01 0.0241 0.0561 0.224 B L1
ENSG00000132122 SPATA6 -669435 sc-eQTL 2.51e-01 0.111 0.0961 0.224 CD4T L1
ENSG00000162368 CMPK1 468976 sc-eQTL 7.74e-01 -0.0185 0.0644 0.224 CD4T L1
ENSG00000162373 BEND5 -974196 sc-eQTL 2.89e-01 0.0908 0.0854 0.224 CD4T L1
ENSG00000162368 CMPK1 468976 sc-eQTL 5.79e-01 -0.033 0.0594 0.224 CD8T L1
ENSG00000162373 BEND5 -974196 sc-eQTL 6.41e-01 0.026 0.0556 0.224 CD8T L1
ENSG00000123473 STIL 488626 sc-eQTL 7.19e-01 -0.0325 0.0902 0.23 DC L1
ENSG00000132122 SPATA6 -669435 sc-eQTL 8.65e-01 -0.0173 0.101 0.23 DC L1
ENSG00000162366 PDZK1IP1 611729 sc-eQTL 1.66e-01 -0.118 0.0852 0.23 DC L1
ENSG00000162368 CMPK1 468976 sc-eQTL 9.89e-01 0.00121 0.0845 0.23 DC L1
ENSG00000162373 BEND5 -974196 sc-eQTL 6.09e-01 -0.0439 0.0857 0.23 DC L1
ENSG00000132122 SPATA6 -669435 sc-eQTL 9.16e-01 0.00761 0.0719 0.224 Mono L1
ENSG00000162368 CMPK1 468976 sc-eQTL 7.24e-01 0.0253 0.0713 0.224 Mono L1
ENSG00000162368 CMPK1 468976 sc-eQTL 2.12e-01 -0.0748 0.0597 0.223 NK L1
ENSG00000123473 STIL 488626 sc-eQTL 2.20e-01 0.0643 0.0522 0.224 Other_T L1
ENSG00000162368 CMPK1 468976 sc-eQTL 8.46e-01 0.0161 0.083 0.224 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -669435 sc-eQTL 6.14e-01 0.0459 0.091 0.222 B_Activated L2
ENSG00000162368 CMPK1 468976 sc-eQTL 9.87e-01 0.00179 0.109 0.222 B_Activated L2
ENSG00000162373 BEND5 -974196 sc-eQTL 5.32e-01 0.0683 0.109 0.222 B_Activated L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 3.18e-01 -0.0987 0.0987 0.223 B_Intermediate L2
ENSG00000162368 CMPK1 468976 sc-eQTL 1.06e-01 -0.135 0.0828 0.223 B_Intermediate L2
ENSG00000162373 BEND5 -974196 sc-eQTL 8.08e-01 0.0219 0.09 0.223 B_Intermediate L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 4.86e-01 0.0633 0.0906 0.226 B_Memory L2
ENSG00000162368 CMPK1 468976 sc-eQTL 9.53e-01 0.00519 0.0888 0.226 B_Memory L2
ENSG00000162373 BEND5 -974196 sc-eQTL 9.70e-01 0.00392 0.105 0.226 B_Memory L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 6.34e-01 -0.0477 0.1 0.224 B_Naive1 L2
ENSG00000162368 CMPK1 468976 sc-eQTL 5.01e-01 -0.0542 0.0804 0.224 B_Naive1 L2
ENSG00000162373 BEND5 -974196 sc-eQTL 7.75e-01 -0.019 0.0664 0.224 B_Naive1 L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 1.32e-01 0.155 0.103 0.225 B_Naive2 L2
ENSG00000162368 CMPK1 468976 sc-eQTL 9.68e-01 0.00341 0.0855 0.225 B_Naive2 L2
ENSG00000162373 BEND5 -974196 sc-eQTL 1.96e-01 0.099 0.0764 0.225 B_Naive2 L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 9.45e-01 0.00623 0.0903 0.227 CD4_CTL L2
ENSG00000162368 CMPK1 468976 sc-eQTL 9.39e-01 0.00778 0.102 0.227 CD4_CTL L2
ENSG00000162373 BEND5 -974196 sc-eQTL 1.14e-01 0.11 0.0692 0.227 CD4_CTL L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 5.86e-02 0.189 0.0995 0.224 CD4_Naive L2
ENSG00000162368 CMPK1 468976 sc-eQTL 7.86e-01 -0.0168 0.0616 0.224 CD4_Naive L2
ENSG00000162373 BEND5 -974196 sc-eQTL 3.22e-01 0.0956 0.0962 0.224 CD4_Naive L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 7.24e-01 0.0349 0.0987 0.224 CD4_TCM L2
ENSG00000162368 CMPK1 468976 sc-eQTL 7.24e-01 0.0241 0.0684 0.224 CD4_TCM L2
ENSG00000162373 BEND5 -974196 sc-eQTL 8.87e-01 0.0145 0.101 0.224 CD4_TCM L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 1.21e-01 -0.16 0.103 0.224 CD4_TEM L2
ENSG00000162368 CMPK1 468976 sc-eQTL 9.90e-01 0.00113 0.0857 0.224 CD4_TEM L2
ENSG00000162373 BEND5 -974196 sc-eQTL 8.97e-01 -0.0111 0.086 0.224 CD4_TEM L2
ENSG00000162368 CMPK1 468976 sc-eQTL 2.83e-01 -0.086 0.0799 0.224 CD8_CTL L2
ENSG00000162373 BEND5 -974196 sc-eQTL 1.77e-01 -0.107 0.0792 0.224 CD8_CTL L2
ENSG00000162368 CMPK1 468976 sc-eQTL 9.04e-01 -0.00922 0.076 0.224 CD8_Naive L2
ENSG00000162373 BEND5 -974196 sc-eQTL 7.17e-01 0.034 0.0937 0.224 CD8_Naive L2
ENSG00000162368 CMPK1 468976 sc-eQTL 4.84e-01 -0.0611 0.0871 0.227 CD8_TCM L2
ENSG00000162373 BEND5 -974196 sc-eQTL 6.46e-01 -0.0462 0.101 0.227 CD8_TCM L2
ENSG00000162368 CMPK1 468976 sc-eQTL 9.07e-01 -0.012 0.102 0.219 CD8_TEM L2
ENSG00000162373 BEND5 -974196 sc-eQTL 7.27e-01 -0.03 0.0857 0.219 CD8_TEM L2
ENSG00000123473 STIL 488626 sc-eQTL 9.81e-01 0.00199 0.0835 0.227 MAIT L2
ENSG00000162368 CMPK1 468976 sc-eQTL 6.98e-01 0.0324 0.0834 0.227 MAIT L2
ENSG00000162368 CMPK1 468976 sc-eQTL 6.21e-01 0.0485 0.0981 0.222 NK_CD56bright L2
ENSG00000162368 CMPK1 468976 sc-eQTL 3.87e-02 -0.153 0.0734 0.224 NK_CD56dim L2
ENSG00000162368 CMPK1 468976 sc-eQTL 9.94e-01 -0.000813 0.1 0.215 NK_HLA L2
ENSG00000162368 CMPK1 468976 sc-eQTL 9.14e-02 -0.149 0.088 0.224 NK_cytokine L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 8.69e-01 -0.014 0.0844 0.222 PB L2
ENSG00000162368 CMPK1 468976 sc-eQTL 5.31e-01 0.0704 0.112 0.222 PB L2
ENSG00000162373 BEND5 -974196 sc-eQTL 6.84e-01 -0.0488 0.12 0.222 PB L2
ENSG00000123473 STIL 488626 sc-eQTL 1.63e-01 0.0922 0.0658 0.222 Pro_T L2
ENSG00000162368 CMPK1 468976 sc-eQTL 5.16e-05 0.385 0.0932 0.222 Pro_T L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 3.90e-01 0.0726 0.0843 0.224 Treg L2
ENSG00000162368 CMPK1 468976 sc-eQTL 5.90e-01 -0.0414 0.0767 0.224 Treg L2
ENSG00000162373 BEND5 -974196 sc-eQTL 2.04e-01 0.106 0.0829 0.224 Treg L2
ENSG00000123473 STIL 488626 sc-eQTL 9.82e-02 -0.145 0.0875 0.234 cDC L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 6.46e-01 -0.0478 0.104 0.234 cDC L2
ENSG00000162366 PDZK1IP1 611729 sc-eQTL 1.66e-01 -0.118 0.0848 0.234 cDC L2
ENSG00000162368 CMPK1 468976 sc-eQTL 5.66e-01 0.0552 0.0959 0.234 cDC L2
ENSG00000162373 BEND5 -974196 sc-eQTL 9.03e-01 0.0103 0.0844 0.234 cDC L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 5.73e-01 -0.0493 0.0873 0.224 cMono_IL1B L2
ENSG00000162368 CMPK1 468976 sc-eQTL 4.86e-01 0.0553 0.0791 0.224 cMono_IL1B L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 6.51e-01 0.043 0.0947 0.224 cMono_S100A L2
ENSG00000162368 CMPK1 468976 sc-eQTL 5.25e-01 0.0579 0.091 0.224 cMono_S100A L2
ENSG00000123473 STIL 488626 sc-eQTL 9.85e-02 0.159 0.0958 0.227 gdT L2
ENSG00000162368 CMPK1 468976 sc-eQTL 9.17e-01 -0.0117 0.113 0.227 gdT L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 4.99e-01 -0.0672 0.0993 0.229 intMono L2
ENSG00000162368 CMPK1 468976 sc-eQTL 7.50e-01 -0.0313 0.0981 0.229 intMono L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 5.48e-01 0.0489 0.0813 0.226 ncMono L2
ENSG00000162368 CMPK1 468976 sc-eQTL 1.13e-01 -0.15 0.0942 0.226 ncMono L2
ENSG00000123473 STIL 488626 sc-eQTL 3.30e-01 0.0946 0.0969 0.22 pDC L2
ENSG00000132122 SPATA6 -669435 sc-eQTL 8.36e-01 -0.0228 0.11 0.22 pDC L2
ENSG00000162366 PDZK1IP1 611729 sc-eQTL 3.29e-01 -0.0873 0.0891 0.22 pDC L2
ENSG00000162368 CMPK1 468976 sc-eQTL 5.15e-01 -0.0696 0.107 0.22 pDC L2
ENSG00000162373 BEND5 -974196 sc-eQTL 4.10e-01 -0.0863 0.105 0.22 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -669435 sc-eQTL 6.45e-01 -0.0458 0.0992 0.224 B_Memory LOneK1K
ENSG00000162368 CMPK1 468976 sc-eQTL 1.25e-01 -0.122 0.079 0.224 B_Memory LOneK1K
ENSG00000162373 BEND5 -974196 sc-eQTL 7.44e-01 0.0272 0.0833 0.224 B_Memory LOneK1K
ENSG00000132122 SPATA6 -669435 sc-eQTL 8.12e-01 0.0241 0.101 0.224 B_Naive LOneK1K
ENSG00000162368 CMPK1 468976 sc-eQTL 7.60e-01 -0.0241 0.079 0.224 B_Naive LOneK1K
ENSG00000162373 BEND5 -974196 sc-eQTL 5.22e-01 0.0373 0.0583 0.224 B_Naive LOneK1K
ENSG00000132122 SPATA6 -669435 sc-eQTL 8.80e-01 -0.0127 0.0836 0.224 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 468976 sc-eQTL 5.17e-01 0.047 0.0723 0.224 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -669435 sc-eQTL 4.24e-01 0.0584 0.073 0.224 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 468976 sc-eQTL 2.45e-01 -0.0991 0.085 0.224 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 468976 sc-eQTL 4.31e-02 -0.124 0.061 0.224 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000186564 FOXD2 366756 eQTL 2.08e-02 0.0677 0.0292 0.0012 0.0 0.224
ENSG00000235105 AL356968.2 -633194 eQTL 0.00772 0.125 0.0468 0.0 0.00111 0.224

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000186564 FOXD2 366756 6.09e-07 6.04e-07 7.87e-08 4.31e-07 1.06e-07 1.57e-07 4.25e-07 1.03e-07 3.82e-07 1.89e-07 6.28e-07 3.21e-07 7.71e-07 1.41e-07 1.9e-07 1.84e-07 2.48e-07 3.39e-07 1.55e-07 1.51e-07 1.59e-07 2.99e-07 3.02e-07 1.29e-07 7.42e-07 2.32e-07 1.85e-07 2.24e-07 2.57e-07 3.8e-07 3.43e-07 7.03e-08 5.07e-08 1.57e-07 2.7e-07 8.75e-08 1.43e-07 5.25e-08 4.37e-08 3.01e-08 4.84e-08 4.55e-07 3.18e-08 1.77e-08 4.06e-08 1.37e-08 9.07e-08 0.0 4.61e-08
ENSG00000235105 AL356968.2 -633194 2.74e-07 1.33e-07 4.08e-08 2.09e-07 1.01e-07 9.76e-08 1.53e-07 5.53e-08 1.45e-07 5.42e-08 1.63e-07 9.19e-08 1.69e-07 7.64e-08 6.25e-08 7.49e-08 4.01e-08 1.33e-07 5.97e-08 4.89e-08 1.08e-07 1.24e-07 1.45e-07 2.64e-08 1.65e-07 1.21e-07 1.07e-07 9.74e-08 1.12e-07 1.07e-07 1.07e-07 2.96e-08 3.35e-08 8.89e-08 5.99e-08 3.28e-08 4.49e-08 9.22e-08 6.86e-08 4.47e-08 3.59e-08 1.46e-07 4.19e-08 1.58e-08 5.75e-08 1.84e-08 1.22e-07 3.81e-09 4.79e-08