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Genes within 1Mb (chr1:47789110:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -683098 sc-eQTL 4.79e-02 0.165 0.0827 0.506 B L1
ENSG00000162368 CMPK1 455313 sc-eQTL 9.32e-01 0.00498 0.0579 0.506 B L1
ENSG00000162373 BEND5 -987859 sc-eQTL 9.18e-02 -0.0811 0.0479 0.506 B L1
ENSG00000132122 SPATA6 -683098 sc-eQTL 8.26e-01 0.018 0.0818 0.506 CD4T L1
ENSG00000162368 CMPK1 455313 sc-eQTL 1.55e-01 -0.0775 0.0544 0.506 CD4T L1
ENSG00000162373 BEND5 -987859 sc-eQTL 8.59e-01 0.013 0.0726 0.506 CD4T L1
ENSG00000162368 CMPK1 455313 sc-eQTL 2.81e-01 -0.0544 0.0504 0.506 CD8T L1
ENSG00000162373 BEND5 -987859 sc-eQTL 3.78e-01 0.0416 0.0472 0.506 CD8T L1
ENSG00000123473 STIL 474963 sc-eQTL 2.14e-01 0.094 0.0754 0.495 DC L1
ENSG00000132122 SPATA6 -683098 sc-eQTL 7.03e-01 0.0324 0.0847 0.495 DC L1
ENSG00000162366 PDZK1IP1 598066 sc-eQTL 5.08e-01 0.0475 0.0717 0.495 DC L1
ENSG00000162368 CMPK1 455313 sc-eQTL 5.38e-01 -0.0436 0.0708 0.495 DC L1
ENSG00000162373 BEND5 -987859 sc-eQTL 2.44e-02 0.161 0.0709 0.495 DC L1
ENSG00000132122 SPATA6 -683098 sc-eQTL 7.88e-01 -0.0166 0.0614 0.506 Mono L1
ENSG00000162368 CMPK1 455313 sc-eQTL 2.65e-01 -0.0678 0.0608 0.506 Mono L1
ENSG00000162368 CMPK1 455313 sc-eQTL 6.65e-01 0.0222 0.0512 0.509 NK L1
ENSG00000123473 STIL 474963 sc-eQTL 2.81e-01 0.0477 0.0441 0.506 Other_T L1
ENSG00000162368 CMPK1 455313 sc-eQTL 3.20e-02 -0.15 0.0693 0.506 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -683098 sc-eQTL 6.45e-01 -0.0363 0.0786 0.513 B_Activated L2
ENSG00000162368 CMPK1 455313 sc-eQTL 9.44e-01 -0.00664 0.0941 0.513 B_Activated L2
ENSG00000162373 BEND5 -987859 sc-eQTL 5.09e-01 -0.0624 0.0943 0.513 B_Activated L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 2.00e-01 0.109 0.0847 0.509 B_Intermediate L2
ENSG00000162368 CMPK1 455313 sc-eQTL 7.84e-01 0.0196 0.0716 0.509 B_Intermediate L2
ENSG00000162373 BEND5 -987859 sc-eQTL 4.51e-01 -0.0583 0.0772 0.509 B_Intermediate L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 7.87e-02 -0.136 0.077 0.504 B_Memory L2
ENSG00000162368 CMPK1 455313 sc-eQTL 1.01e-01 -0.124 0.0755 0.504 B_Memory L2
ENSG00000162373 BEND5 -987859 sc-eQTL 3.36e-01 -0.0862 0.0895 0.504 B_Memory L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 5.96e-01 0.0454 0.0856 0.506 B_Naive1 L2
ENSG00000162368 CMPK1 455313 sc-eQTL 5.89e-01 0.0373 0.0688 0.506 B_Naive1 L2
ENSG00000162373 BEND5 -987859 sc-eQTL 1.28e-01 -0.0865 0.0566 0.506 B_Naive1 L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 5.37e-01 0.054 0.0874 0.506 B_Naive2 L2
ENSG00000162368 CMPK1 455313 sc-eQTL 3.69e-01 0.0651 0.0723 0.506 B_Naive2 L2
ENSG00000162373 BEND5 -987859 sc-eQTL 6.87e-01 -0.0263 0.065 0.506 B_Naive2 L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 9.54e-01 0.00433 0.0745 0.5 CD4_CTL L2
ENSG00000162368 CMPK1 455313 sc-eQTL 6.81e-01 -0.0346 0.0842 0.5 CD4_CTL L2
ENSG00000162373 BEND5 -987859 sc-eQTL 1.01e-01 -0.0939 0.057 0.5 CD4_CTL L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 1.95e-01 -0.11 0.0844 0.506 CD4_Naive L2
ENSG00000162368 CMPK1 455313 sc-eQTL 2.42e-01 -0.0609 0.0519 0.506 CD4_Naive L2
ENSG00000162373 BEND5 -987859 sc-eQTL 4.95e-01 0.0556 0.0814 0.506 CD4_Naive L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 1.13e-01 0.132 0.0832 0.506 CD4_TCM L2
ENSG00000162368 CMPK1 455313 sc-eQTL 1.26e-01 -0.0885 0.0576 0.506 CD4_TCM L2
ENSG00000162373 BEND5 -987859 sc-eQTL 6.44e-01 -0.0397 0.0858 0.506 CD4_TCM L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 6.27e-02 0.163 0.087 0.506 CD4_TEM L2
ENSG00000162368 CMPK1 455313 sc-eQTL 7.58e-02 -0.128 0.0719 0.506 CD4_TEM L2
ENSG00000162373 BEND5 -987859 sc-eQTL 2.68e-01 -0.0806 0.0725 0.506 CD4_TEM L2
ENSG00000162368 CMPK1 455313 sc-eQTL 7.53e-01 0.021 0.0667 0.506 CD8_CTL L2
ENSG00000162373 BEND5 -987859 sc-eQTL 6.05e-01 0.0343 0.0662 0.506 CD8_CTL L2
ENSG00000162368 CMPK1 455313 sc-eQTL 2.26e-01 -0.0785 0.0646 0.506 CD8_Naive L2
ENSG00000162373 BEND5 -987859 sc-eQTL 4.43e-01 0.0613 0.0798 0.506 CD8_Naive L2
ENSG00000162368 CMPK1 455313 sc-eQTL 6.19e-01 -0.0371 0.0744 0.514 CD8_TCM L2
ENSG00000162373 BEND5 -987859 sc-eQTL 4.19e-01 0.0695 0.0857 0.514 CD8_TCM L2
ENSG00000162368 CMPK1 455313 sc-eQTL 4.58e-01 -0.0627 0.0844 0.507 CD8_TEM L2
ENSG00000162373 BEND5 -987859 sc-eQTL 6.54e-01 -0.0319 0.071 0.507 CD8_TEM L2
ENSG00000123473 STIL 474963 sc-eQTL 6.09e-01 -0.0362 0.0708 0.506 MAIT L2
ENSG00000162368 CMPK1 455313 sc-eQTL 1.52e-02 -0.171 0.0698 0.506 MAIT L2
ENSG00000162368 CMPK1 455313 sc-eQTL 8.22e-02 -0.143 0.0821 0.509 NK_CD56bright L2
ENSG00000162368 CMPK1 455313 sc-eQTL 2.70e-01 0.0691 0.0626 0.506 NK_CD56dim L2
ENSG00000162368 CMPK1 455313 sc-eQTL 3.07e-01 -0.0836 0.0816 0.511 NK_HLA L2
ENSG00000162368 CMPK1 455313 sc-eQTL 6.89e-01 0.0308 0.0768 0.506 NK_cytokine L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 6.34e-01 0.0336 0.0704 0.526 PB L2
ENSG00000162368 CMPK1 455313 sc-eQTL 8.04e-03 -0.245 0.0909 0.526 PB L2
ENSG00000162373 BEND5 -987859 sc-eQTL 7.42e-01 0.0329 0.1 0.526 PB L2
ENSG00000123473 STIL 474963 sc-eQTL 9.83e-01 -0.00118 0.0553 0.511 Pro_T L2
ENSG00000162368 CMPK1 455313 sc-eQTL 1.62e-02 -0.194 0.08 0.511 Pro_T L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 7.35e-01 -0.0243 0.0717 0.506 Treg L2
ENSG00000162368 CMPK1 455313 sc-eQTL 1.47e-01 -0.0945 0.0649 0.506 Treg L2
ENSG00000162373 BEND5 -987859 sc-eQTL 9.70e-01 0.0027 0.0708 0.506 Treg L2
ENSG00000123473 STIL 474963 sc-eQTL 4.47e-01 0.0584 0.0766 0.488 cDC L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 1.08e-01 -0.145 0.0899 0.488 cDC L2
ENSG00000162366 PDZK1IP1 598066 sc-eQTL 3.10e-01 0.0753 0.074 0.488 cDC L2
ENSG00000162368 CMPK1 455313 sc-eQTL 9.67e-01 -0.00345 0.0835 0.488 cDC L2
ENSG00000162373 BEND5 -987859 sc-eQTL 8.12e-01 -0.0175 0.0735 0.488 cDC L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 6.94e-01 -0.0294 0.0746 0.506 cMono_IL1B L2
ENSG00000162368 CMPK1 455313 sc-eQTL 3.02e-01 -0.0699 0.0675 0.506 cMono_IL1B L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 3.72e-01 -0.0722 0.0807 0.506 cMono_S100A L2
ENSG00000162368 CMPK1 455313 sc-eQTL 2.02e-01 -0.099 0.0774 0.506 cMono_S100A L2
ENSG00000123473 STIL 474963 sc-eQTL 7.90e-01 0.0226 0.0849 0.524 gdT L2
ENSG00000162368 CMPK1 455313 sc-eQTL 8.48e-01 -0.0189 0.0987 0.524 gdT L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 7.24e-01 0.0301 0.0852 0.5 intMono L2
ENSG00000162368 CMPK1 455313 sc-eQTL 3.39e-01 -0.0804 0.084 0.5 intMono L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 2.96e-01 0.0715 0.0682 0.502 ncMono L2
ENSG00000162368 CMPK1 455313 sc-eQTL 2.77e-01 0.0865 0.0794 0.502 ncMono L2
ENSG00000123473 STIL 474963 sc-eQTL 3.38e-01 0.0762 0.0793 0.508 pDC L2
ENSG00000132122 SPATA6 -683098 sc-eQTL 2.46e-01 0.104 0.0898 0.508 pDC L2
ENSG00000162366 PDZK1IP1 598066 sc-eQTL 5.96e-01 0.0389 0.0731 0.508 pDC L2
ENSG00000162368 CMPK1 455313 sc-eQTL 8.59e-01 0.0155 0.0873 0.508 pDC L2
ENSG00000162373 BEND5 -987859 sc-eQTL 4.10e-02 0.174 0.0846 0.508 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -683098 sc-eQTL 5.62e-01 0.0502 0.0864 0.506 B_Memory LOneK1K
ENSG00000162368 CMPK1 455313 sc-eQTL 5.34e-01 -0.0431 0.0692 0.506 B_Memory LOneK1K
ENSG00000162373 BEND5 -987859 sc-eQTL 2.90e-01 -0.0767 0.0724 0.506 B_Memory LOneK1K
ENSG00000132122 SPATA6 -683098 sc-eQTL 4.59e-01 0.0645 0.0868 0.506 B_Naive LOneK1K
ENSG00000162368 CMPK1 455313 sc-eQTL 4.48e-01 0.0516 0.0678 0.506 B_Naive LOneK1K
ENSG00000162373 BEND5 -987859 sc-eQTL 5.31e-02 -0.0966 0.0496 0.506 B_Naive LOneK1K
ENSG00000132122 SPATA6 -683098 sc-eQTL 6.34e-01 -0.0341 0.0716 0.506 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 455313 sc-eQTL 7.21e-02 -0.111 0.0616 0.506 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -683098 sc-eQTL 3.44e-01 0.0595 0.0627 0.506 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 455313 sc-eQTL 7.90e-01 0.0195 0.0733 0.506 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 455313 sc-eQTL 2.95e-01 0.055 0.0524 0.506 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000123473 \N 474963 1.11e-06 7.56e-07 2.01e-07 4.32e-07 9.9e-08 3.32e-07 6.23e-07 2.65e-07 7.85e-07 3.05e-07 1.03e-06 5.4e-07 1.02e-06 1.76e-07 3.35e-07 4.12e-07 6.15e-07 4.4e-07 3.51e-07 2.68e-07 2.62e-07 5.76e-07 4.74e-07 3.01e-07 1.16e-06 2.55e-07 4.9e-07 3.95e-07 5.9e-07 7.09e-07 3.79e-07 4.47e-08 5.95e-08 2.77e-07 3.37e-07 2.96e-07 2.79e-07 1.17e-07 7.63e-08 1.79e-08 1.14e-07 7.04e-07 6.37e-08 1.94e-08 1.94e-07 4.48e-08 1.43e-07 7.28e-08 5.18e-08