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Genes within 1Mb (chr1:47714347:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -757861 sc-eQTL 3.49e-01 -0.0825 0.088 0.66 B L1
ENSG00000159658 EFCAB14 995233 sc-eQTL 3.25e-01 0.0504 0.0512 0.66 B L1
ENSG00000162368 CMPK1 380550 sc-eQTL 4.73e-01 0.0439 0.061 0.66 B L1
ENSG00000132122 SPATA6 -757861 sc-eQTL 2.54e-01 0.1 0.0875 0.66 CD4T L1
ENSG00000159658 EFCAB14 995233 sc-eQTL 6.24e-01 -0.0223 0.0454 0.66 CD4T L1
ENSG00000162368 CMPK1 380550 sc-eQTL 8.15e-01 -0.0137 0.0586 0.66 CD4T L1
ENSG00000159658 EFCAB14 995233 sc-eQTL 8.16e-01 -0.0122 0.0525 0.66 CD8T L1
ENSG00000162368 CMPK1 380550 sc-eQTL 6.54e-01 -0.0245 0.0545 0.66 CD8T L1
ENSG00000123473 STIL 400200 sc-eQTL 2.01e-01 0.107 0.0831 0.664 DC L1
ENSG00000132122 SPATA6 -757861 sc-eQTL 2.97e-01 0.0975 0.0932 0.664 DC L1
ENSG00000159658 EFCAB14 995233 sc-eQTL 5.90e-02 -0.154 0.0813 0.664 DC L1
ENSG00000162366 PDZK1IP1 523303 sc-eQTL 4.63e-01 0.0582 0.0791 0.664 DC L1
ENSG00000162368 CMPK1 380550 sc-eQTL 3.96e-01 -0.0663 0.078 0.664 DC L1
ENSG00000132122 SPATA6 -757861 sc-eQTL 7.00e-01 0.0254 0.066 0.66 Mono L1
ENSG00000159658 EFCAB14 995233 sc-eQTL 4.15e-01 -0.0477 0.0584 0.66 Mono L1
ENSG00000162368 CMPK1 380550 sc-eQTL 9.20e-01 -0.00661 0.0655 0.66 Mono L1
ENSG00000159658 EFCAB14 995233 sc-eQTL 1.29e-01 -0.0867 0.0568 0.663 NK L1
ENSG00000162368 CMPK1 380550 sc-eQTL 8.83e-01 0.00809 0.0549 0.663 NK L1
ENSG00000123473 STIL 400200 sc-eQTL 7.32e-01 0.0163 0.0474 0.66 Other_T L1
ENSG00000159658 EFCAB14 995233 sc-eQTL 8.45e-01 -0.0113 0.0578 0.66 Other_T L1
ENSG00000162368 CMPK1 380550 sc-eQTL 6.76e-01 0.0313 0.075 0.66 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -757861 sc-eQTL 3.84e-01 -0.0718 0.0822 0.663 B_Activated L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 9.73e-01 0.00355 0.104 0.663 B_Activated L2
ENSG00000162368 CMPK1 380550 sc-eQTL 9.09e-01 -0.0113 0.0986 0.663 B_Activated L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 7.78e-02 -0.16 0.0903 0.663 B_Intermediate L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 3.76e-01 0.07 0.079 0.663 B_Intermediate L2
ENSG00000162368 CMPK1 380550 sc-eQTL 5.76e-01 0.0428 0.0765 0.663 B_Intermediate L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 5.22e-01 -0.0522 0.0813 0.662 B_Memory L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 3.30e-01 0.0793 0.0813 0.662 B_Memory L2
ENSG00000162368 CMPK1 380550 sc-eQTL 9.55e-01 0.00451 0.0798 0.662 B_Memory L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 8.64e-01 0.0158 0.092 0.66 B_Naive1 L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 8.23e-01 0.0144 0.0645 0.66 B_Naive1 L2
ENSG00000162368 CMPK1 380550 sc-eQTL 6.15e-01 0.0373 0.074 0.66 B_Naive1 L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 7.67e-01 -0.0283 0.0951 0.663 B_Naive2 L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 8.71e-01 -0.0118 0.0724 0.663 B_Naive2 L2
ENSG00000162368 CMPK1 380550 sc-eQTL 4.34e-01 0.0617 0.0787 0.663 B_Naive2 L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 3.89e-01 -0.0702 0.0813 0.657 CD4_CTL L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 4.88e-01 -0.0619 0.0892 0.657 CD4_CTL L2
ENSG00000162368 CMPK1 380550 sc-eQTL 4.57e-01 -0.0685 0.092 0.657 CD4_CTL L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 5.94e-01 0.0485 0.0909 0.66 CD4_Naive L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 3.13e-01 -0.0495 0.0489 0.66 CD4_Naive L2
ENSG00000162368 CMPK1 380550 sc-eQTL 9.30e-01 0.00495 0.0559 0.66 CD4_Naive L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 2.78e-01 0.099 0.0911 0.66 CD4_TCM L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 5.29e-01 -0.039 0.0618 0.66 CD4_TCM L2
ENSG00000162368 CMPK1 380550 sc-eQTL 3.09e-01 -0.0644 0.0631 0.66 CD4_TCM L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 5.67e-02 0.181 0.0943 0.66 CD4_TEM L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 9.62e-01 0.00334 0.0699 0.66 CD4_TEM L2
ENSG00000162368 CMPK1 380550 sc-eQTL 6.99e-01 -0.0304 0.0785 0.66 CD4_TEM L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 7.77e-01 0.0205 0.0725 0.66 CD8_CTL L2
ENSG00000162368 CMPK1 380550 sc-eQTL 3.04e-01 0.0744 0.0722 0.66 CD8_CTL L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 7.48e-01 -0.024 0.0746 0.66 CD8_Naive L2
ENSG00000162368 CMPK1 380550 sc-eQTL 8.62e-01 0.0121 0.0699 0.66 CD8_Naive L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 4.18e-01 -0.0695 0.0856 0.669 CD8_TCM L2
ENSG00000162368 CMPK1 380550 sc-eQTL 7.10e-01 0.03 0.0804 0.669 CD8_TCM L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 3.21e-01 -0.091 0.0914 0.653 CD8_TEM L2
ENSG00000162368 CMPK1 380550 sc-eQTL 4.82e-01 -0.0642 0.0912 0.653 CD8_TEM L2
ENSG00000123473 STIL 400200 sc-eQTL 4.43e-01 0.0579 0.0753 0.662 MAIT L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 2.76e-01 -0.0808 0.074 0.662 MAIT L2
ENSG00000162368 CMPK1 380550 sc-eQTL 9.79e-01 0.00197 0.0754 0.662 MAIT L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 4.52e-01 -0.0666 0.0884 0.667 NK_CD56bright L2
ENSG00000162368 CMPK1 380550 sc-eQTL 5.82e-01 -0.0489 0.0887 0.667 NK_CD56bright L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 1.40e-01 -0.0968 0.0654 0.662 NK_CD56dim L2
ENSG00000162368 CMPK1 380550 sc-eQTL 6.82e-01 -0.0275 0.067 0.662 NK_CD56dim L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 3.22e-01 -0.0783 0.079 0.667 NK_HLA L2
ENSG00000162368 CMPK1 380550 sc-eQTL 3.67e-01 0.0791 0.0875 0.667 NK_HLA L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 1.19e-01 -0.117 0.0748 0.662 NK_cytokine L2
ENSG00000162368 CMPK1 380550 sc-eQTL 6.10e-01 0.0419 0.0821 0.662 NK_cytokine L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 3.18e-02 0.168 0.0772 0.656 PB L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 9.05e-01 0.0122 0.102 0.656 PB L2
ENSG00000162368 CMPK1 380550 sc-eQTL 3.00e-02 -0.226 0.103 0.656 PB L2
ENSG00000123473 STIL 400200 sc-eQTL 2.22e-01 0.0721 0.0588 0.663 Pro_T L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 5.43e-01 -0.0476 0.078 0.663 Pro_T L2
ENSG00000162368 CMPK1 380550 sc-eQTL 4.93e-01 -0.0594 0.0865 0.663 Pro_T L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 9.32e-01 0.00667 0.0783 0.66 Treg L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 8.73e-01 0.0124 0.0777 0.66 Treg L2
ENSG00000162368 CMPK1 380550 sc-eQTL 3.10e-01 -0.0723 0.0711 0.66 Treg L2
ENSG00000123473 STIL 400200 sc-eQTL 1.91e-01 0.108 0.0825 0.659 cDC L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 4.64e-01 0.0718 0.0978 0.659 cDC L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 8.78e-02 -0.163 0.0949 0.659 cDC L2
ENSG00000162366 PDZK1IP1 523303 sc-eQTL 6.77e-01 0.0335 0.0801 0.659 cDC L2
ENSG00000162368 CMPK1 380550 sc-eQTL 4.19e-01 -0.073 0.0901 0.659 cDC L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 7.74e-01 -0.023 0.08 0.66 cMono_IL1B L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 2.37e-01 -0.0787 0.0664 0.66 cMono_IL1B L2
ENSG00000162368 CMPK1 380550 sc-eQTL 8.63e-01 -0.0126 0.0725 0.66 cMono_IL1B L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 9.17e-01 -0.00902 0.0868 0.66 cMono_S100A L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 2.92e-01 -0.076 0.0718 0.66 cMono_S100A L2
ENSG00000162368 CMPK1 380550 sc-eQTL 2.72e-01 -0.0917 0.0832 0.66 cMono_S100A L2
ENSG00000123473 STIL 400200 sc-eQTL 3.05e-01 0.0947 0.092 0.661 gdT L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 5.59e-01 0.059 0.101 0.661 gdT L2
ENSG00000162368 CMPK1 380550 sc-eQTL 4.85e-01 0.075 0.107 0.661 gdT L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 5.41e-01 0.0569 0.0928 0.66 intMono L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 4.88e-01 -0.0552 0.0796 0.66 intMono L2
ENSG00000162368 CMPK1 380550 sc-eQTL 7.56e-01 -0.0286 0.0917 0.66 intMono L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 2.91e-01 0.0802 0.0757 0.661 ncMono L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 1.51e-01 0.13 0.09 0.661 ncMono L2
ENSG00000162368 CMPK1 380550 sc-eQTL 2.23e-01 0.108 0.0882 0.661 ncMono L2
ENSG00000123473 STIL 400200 sc-eQTL 4.18e-01 0.0724 0.0891 0.658 pDC L2
ENSG00000132122 SPATA6 -757861 sc-eQTL 3.61e-01 0.0924 0.101 0.658 pDC L2
ENSG00000159658 EFCAB14 995233 sc-eQTL 7.14e-01 -0.0338 0.0919 0.658 pDC L2
ENSG00000162366 PDZK1IP1 523303 sc-eQTL 7.86e-02 0.144 0.0813 0.658 pDC L2
ENSG00000162368 CMPK1 380550 sc-eQTL 4.26e-02 -0.198 0.0967 0.658 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -757861 sc-eQTL 4.65e-02 -0.18 0.0899 0.66 B_Memory LOneK1K
ENSG00000159658 EFCAB14 995233 sc-eQTL 3.07e-01 0.073 0.0712 0.66 B_Memory LOneK1K
ENSG00000162368 CMPK1 380550 sc-eQTL 8.72e-01 -0.0118 0.0727 0.66 B_Memory LOneK1K
ENSG00000132122 SPATA6 -757861 sc-eQTL 8.00e-01 0.0236 0.093 0.66 B_Naive LOneK1K
ENSG00000159658 EFCAB14 995233 sc-eQTL 6.91e-01 0.0236 0.0595 0.66 B_Naive LOneK1K
ENSG00000162368 CMPK1 380550 sc-eQTL 3.96e-01 0.0617 0.0725 0.66 B_Naive LOneK1K
ENSG00000132122 SPATA6 -757861 sc-eQTL 7.89e-01 -0.0205 0.0768 0.66 CD14_Mono LOneK1K
ENSG00000159658 EFCAB14 995233 sc-eQTL 1.60e-01 -0.086 0.061 0.66 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 380550 sc-eQTL 7.96e-01 -0.0172 0.0665 0.66 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -757861 sc-eQTL 9.23e-02 0.114 0.0675 0.664 CD16_Mono LOneK1K
ENSG00000159658 EFCAB14 995233 sc-eQTL 4.66e-01 0.0578 0.0792 0.664 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 380550 sc-eQTL 7.53e-01 0.025 0.0794 0.664 CD16_Mono LOneK1K
ENSG00000159658 EFCAB14 995233 sc-eQTL 1.04e-01 -0.0977 0.0599 0.662 NK_CD56dim LOneK1K
ENSG00000162368 CMPK1 380550 sc-eQTL 9.04e-01 0.00686 0.0568 0.662 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162367 TAL1 482127 eQTL 0.0486 0.0262 0.0133 0.0 0.0 0.411

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina