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Genes within 1Mb (chr1:47701354:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -770854 sc-eQTL 6.02e-01 -0.045 0.0862 0.63 B L1
ENSG00000159658 EFCAB14 982240 sc-eQTL 8.56e-02 0.0861 0.0498 0.63 B L1
ENSG00000162368 CMPK1 367557 sc-eQTL 2.66e-01 0.0665 0.0596 0.63 B L1
ENSG00000132122 SPATA6 -770854 sc-eQTL 2.29e-01 0.102 0.0844 0.63 CD4T L1
ENSG00000159658 EFCAB14 982240 sc-eQTL 8.94e-01 -0.00586 0.0438 0.63 CD4T L1
ENSG00000162368 CMPK1 367557 sc-eQTL 5.82e-01 0.0312 0.0565 0.63 CD4T L1
ENSG00000159658 EFCAB14 982240 sc-eQTL 8.25e-01 0.0113 0.0513 0.63 CD8T L1
ENSG00000162368 CMPK1 367557 sc-eQTL 7.60e-01 -0.0162 0.0532 0.63 CD8T L1
ENSG00000123473 STIL 387207 sc-eQTL 3.50e-01 0.0751 0.0802 0.633 DC L1
ENSG00000132122 SPATA6 -770854 sc-eQTL 5.87e-02 0.17 0.0892 0.633 DC L1
ENSG00000159658 EFCAB14 982240 sc-eQTL 2.42e-02 -0.177 0.078 0.633 DC L1
ENSG00000162366 PDZK1IP1 510310 sc-eQTL 5.91e-01 0.041 0.0762 0.633 DC L1
ENSG00000162368 CMPK1 367557 sc-eQTL 9.53e-01 -0.00446 0.0752 0.633 DC L1
ENSG00000132122 SPATA6 -770854 sc-eQTL 6.51e-01 -0.029 0.0641 0.63 Mono L1
ENSG00000159658 EFCAB14 982240 sc-eQTL 6.07e-01 -0.0292 0.0568 0.63 Mono L1
ENSG00000162368 CMPK1 367557 sc-eQTL 9.49e-01 -0.00411 0.0636 0.63 Mono L1
ENSG00000159658 EFCAB14 982240 sc-eQTL 3.57e-01 -0.0512 0.0555 0.633 NK L1
ENSG00000162368 CMPK1 367557 sc-eQTL 6.21e-01 0.0264 0.0533 0.633 NK L1
ENSG00000123473 STIL 387207 sc-eQTL 9.32e-01 0.00394 0.0462 0.63 Other_T L1
ENSG00000159658 EFCAB14 982240 sc-eQTL 2.58e-01 -0.0638 0.0563 0.63 Other_T L1
ENSG00000162368 CMPK1 367557 sc-eQTL 5.36e-01 0.0453 0.0731 0.63 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -770854 sc-eQTL 7.59e-01 -0.0242 0.079 0.633 B_Activated L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 5.70e-01 0.0568 0.0998 0.633 B_Activated L2
ENSG00000162368 CMPK1 367557 sc-eQTL 7.21e-01 0.0338 0.0945 0.633 B_Activated L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 1.88e-01 -0.116 0.0878 0.631 B_Intermediate L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 1.61e-01 0.107 0.0763 0.631 B_Intermediate L2
ENSG00000162368 CMPK1 367557 sc-eQTL 5.36e-01 0.046 0.0741 0.631 B_Intermediate L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 6.69e-01 -0.0341 0.0795 0.631 B_Memory L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 3.02e-01 0.0821 0.0794 0.631 B_Memory L2
ENSG00000162368 CMPK1 367557 sc-eQTL 9.41e-01 0.00582 0.078 0.631 B_Memory L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 7.29e-01 0.0309 0.0892 0.63 B_Naive1 L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 5.74e-01 0.0352 0.0625 0.63 B_Naive1 L2
ENSG00000162368 CMPK1 367557 sc-eQTL 3.25e-01 0.0706 0.0716 0.63 B_Naive1 L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 6.40e-01 -0.0429 0.0916 0.633 B_Naive2 L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 8.74e-01 0.0111 0.0697 0.633 B_Naive2 L2
ENSG00000162368 CMPK1 367557 sc-eQTL 5.69e-01 0.0433 0.0758 0.633 B_Naive2 L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 2.13e-01 -0.0988 0.079 0.627 CD4_CTL L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 6.55e-01 -0.0389 0.0869 0.627 CD4_CTL L2
ENSG00000162368 CMPK1 367557 sc-eQTL 3.63e-01 -0.0816 0.0895 0.627 CD4_CTL L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 6.81e-01 0.0361 0.0877 0.63 CD4_Naive L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 3.77e-01 -0.0417 0.0472 0.63 CD4_Naive L2
ENSG00000162368 CMPK1 367557 sc-eQTL 5.38e-01 0.0333 0.0539 0.63 CD4_Naive L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 1.59e-01 0.124 0.0878 0.63 CD4_TCM L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 9.23e-01 -0.00575 0.0598 0.63 CD4_TCM L2
ENSG00000162368 CMPK1 367557 sc-eQTL 8.80e-01 -0.00926 0.0611 0.63 CD4_TCM L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 2.79e-02 0.203 0.0916 0.63 CD4_TEM L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 5.51e-01 0.0406 0.0681 0.63 CD4_TEM L2
ENSG00000162368 CMPK1 367557 sc-eQTL 7.74e-01 0.022 0.0765 0.63 CD4_TEM L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 3.95e-01 0.0599 0.0703 0.63 CD8_CTL L2
ENSG00000162368 CMPK1 367557 sc-eQTL 2.35e-01 0.0835 0.0701 0.63 CD8_CTL L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 9.51e-01 -0.00444 0.0727 0.63 CD8_Naive L2
ENSG00000162368 CMPK1 367557 sc-eQTL 9.22e-01 -0.00669 0.0681 0.63 CD8_Naive L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 4.10e-01 -0.069 0.0836 0.637 CD8_TCM L2
ENSG00000162368 CMPK1 367557 sc-eQTL 4.78e-01 0.0558 0.0785 0.637 CD8_TCM L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 3.93e-01 -0.0753 0.0879 0.619 CD8_TEM L2
ENSG00000162368 CMPK1 367557 sc-eQTL 7.45e-01 -0.0286 0.0877 0.619 CD8_TEM L2
ENSG00000123473 STIL 387207 sc-eQTL 5.41e-01 0.0449 0.0733 0.632 MAIT L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 5.77e-02 -0.137 0.0715 0.632 MAIT L2
ENSG00000162368 CMPK1 367557 sc-eQTL 9.88e-01 -0.00106 0.0734 0.632 MAIT L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 8.27e-01 0.019 0.0866 0.638 NK_CD56bright L2
ENSG00000162368 CMPK1 367557 sc-eQTL 5.84e-01 -0.0476 0.0868 0.638 NK_CD56bright L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 2.56e-01 -0.0724 0.0636 0.631 NK_CD56dim L2
ENSG00000162368 CMPK1 367557 sc-eQTL 6.61e-01 -0.0286 0.0651 0.631 NK_CD56dim L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 4.12e-01 -0.0632 0.0769 0.637 NK_HLA L2
ENSG00000162368 CMPK1 367557 sc-eQTL 2.62e-01 0.0956 0.0851 0.637 NK_HLA L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 3.86e-01 -0.0632 0.0728 0.631 NK_cytokine L2
ENSG00000162368 CMPK1 367557 sc-eQTL 5.58e-01 0.0467 0.0795 0.631 NK_cytokine L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 2.62e-02 0.173 0.0767 0.63 PB L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 7.37e-01 -0.034 0.101 0.63 PB L2
ENSG00000162368 CMPK1 367557 sc-eQTL 3.51e-02 -0.218 0.102 0.63 PB L2
ENSG00000123473 STIL 387207 sc-eQTL 6.07e-01 0.0295 0.0573 0.633 Pro_T L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 7.61e-01 -0.0231 0.0758 0.633 Pro_T L2
ENSG00000162368 CMPK1 367557 sc-eQTL 2.12e-01 -0.105 0.0837 0.633 Pro_T L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 4.75e-01 0.0543 0.076 0.63 Treg L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 5.72e-01 0.0426 0.0753 0.63 Treg L2
ENSG00000162368 CMPK1 367557 sc-eQTL 9.12e-01 -0.00763 0.0691 0.63 Treg L2
ENSG00000123473 STIL 387207 sc-eQTL 2.66e-01 0.0884 0.0793 0.624 cDC L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 2.27e-01 0.113 0.0935 0.624 cDC L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 5.04e-02 -0.179 0.0908 0.624 cDC L2
ENSG00000162366 PDZK1IP1 510310 sc-eQTL 9.53e-01 -0.00454 0.0769 0.624 cDC L2
ENSG00000162368 CMPK1 367557 sc-eQTL 5.90e-01 -0.0466 0.0865 0.624 cDC L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 3.32e-01 -0.0755 0.0777 0.63 cMono_IL1B L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 2.27e-01 -0.0782 0.0646 0.63 cMono_IL1B L2
ENSG00000162368 CMPK1 367557 sc-eQTL 7.48e-01 -0.0227 0.0706 0.63 cMono_IL1B L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 4.34e-01 -0.0659 0.0841 0.63 cMono_S100A L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 7.51e-01 -0.0222 0.0699 0.63 cMono_S100A L2
ENSG00000162368 CMPK1 367557 sc-eQTL 3.01e-01 -0.0836 0.0807 0.63 cMono_S100A L2
ENSG00000123473 STIL 387207 sc-eQTL 4.56e-01 0.0677 0.0904 0.624 gdT L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 9.31e-01 0.00858 0.099 0.624 gdT L2
ENSG00000162368 CMPK1 367557 sc-eQTL 5.76e-01 0.059 0.105 0.624 gdT L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 5.69e-01 0.0504 0.0883 0.629 intMono L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 5.15e-01 -0.0493 0.0757 0.629 intMono L2
ENSG00000162368 CMPK1 367557 sc-eQTL 7.84e-01 0.0239 0.0872 0.629 intMono L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 7.34e-01 0.0246 0.0724 0.629 ncMono L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 2.17e-01 0.106 0.0859 0.629 ncMono L2
ENSG00000162368 CMPK1 367557 sc-eQTL 6.48e-01 0.0385 0.0843 0.629 ncMono L2
ENSG00000123473 STIL 387207 sc-eQTL 8.95e-01 0.0112 0.085 0.621 pDC L2
ENSG00000132122 SPATA6 -770854 sc-eQTL 1.35e-01 0.144 0.0957 0.621 pDC L2
ENSG00000159658 EFCAB14 982240 sc-eQTL 6.21e-01 -0.0433 0.0875 0.621 pDC L2
ENSG00000162366 PDZK1IP1 510310 sc-eQTL 5.35e-02 0.15 0.0773 0.621 pDC L2
ENSG00000162368 CMPK1 367557 sc-eQTL 1.97e-01 -0.12 0.0929 0.621 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -770854 sc-eQTL 2.47e-01 -0.102 0.0879 0.63 B_Memory LOneK1K
ENSG00000159658 EFCAB14 982240 sc-eQTL 1.99e-01 0.0891 0.0691 0.63 B_Memory LOneK1K
ENSG00000162368 CMPK1 367557 sc-eQTL 8.90e-01 -0.0098 0.0706 0.63 B_Memory LOneK1K
ENSG00000132122 SPATA6 -770854 sc-eQTL 8.36e-01 0.0186 0.0901 0.63 B_Naive LOneK1K
ENSG00000159658 EFCAB14 982240 sc-eQTL 3.66e-01 0.052 0.0575 0.63 B_Naive LOneK1K
ENSG00000162368 CMPK1 367557 sc-eQTL 2.46e-01 0.0816 0.0701 0.63 B_Naive LOneK1K
ENSG00000132122 SPATA6 -770854 sc-eQTL 2.93e-01 -0.0785 0.0745 0.63 CD14_Mono LOneK1K
ENSG00000159658 EFCAB14 982240 sc-eQTL 3.20e-01 -0.0593 0.0595 0.63 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 367557 sc-eQTL 7.54e-01 -0.0203 0.0647 0.63 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -770854 sc-eQTL 2.37e-01 0.0772 0.0651 0.634 CD16_Mono LOneK1K
ENSG00000159658 EFCAB14 982240 sc-eQTL 4.91e-01 0.0525 0.076 0.634 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 367557 sc-eQTL 7.68e-01 0.0225 0.0762 0.634 CD16_Mono LOneK1K
ENSG00000159658 EFCAB14 982240 sc-eQTL 2.78e-01 -0.0635 0.0584 0.631 NK_CD56dim LOneK1K
ENSG00000162368 CMPK1 367557 sc-eQTL 7.02e-01 0.0211 0.0552 0.631 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162367 TAL1 469134 eQTL 0.0432 0.0273 0.0135 0.0 0.0 0.426

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina